Oreochromis aureus (blue tilapia): 116332185
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Entry
116332185 CDS
T07295
Symbol
col6a4a
Name
(RefSeq) collagen alpha-6(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
oau
Oreochromis aureus (blue tilapia)
Pathway
oau04510
Focal adhesion
oau04512
ECM-receptor interaction
oau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116332185 (col6a4a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116332185 (col6a4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116332185 (col6a4a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oau04147
]
116332185 (col6a4a)
00536 Glycosaminoglycan binding proteins [BR:
oau00536
]
116332185 (col6a4a)
Exosome [BR:
oau04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
116332185 (col6a4a)
Glycosaminoglycan binding proteins [BR:
oau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116332185 (col6a4a)
Hyaluronan
Extracellular matrix or blood plasma proteins
116332185 (col6a4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_3
VWA_CoxE
C19orf12
Motif
Other DBs
NCBI-GeneID:
116332185
NCBI-ProteinID:
XP_031610901
LinkDB
All DBs
Position
LG11:complement(37831494..37904320)
Genome browser
AA seq
2763 aa
AA seq
DB search
MEGRRAALVGLIMAACFYSSGAQTTVCTAEAVADIVFLVDGSWSIGAENFEQIRQFLFTL
VNSFDVSPDHVRIGLVQYSDNPLTEFLLNTFDNKEDILNNIIKLPYRGGGTLTGKGLEFM
LNEHFVGKAGSRAVQKVPQIAVVITDGKSQDDVESHAKNLRRRGIVLYAIGIKDADASQL
REIANDDQHVYSVSDFAALQGISQNIIQTLCTTVEEAKRQLLQLSQECARATVADIVFLV
DSSSSIGVDNFEEIRQFLRSFILGLDIGPDKIRIGLAQYSNETYQEFLLKDHMDKDSLLA
EVDQFPYRTGGRETGKAIDFLQSVYFTKEAGSRASQRVPQFAVVITDGDSTDDVVEPAKR
LRDQGVIIFGIGVGEVNQQELESIVNLPAHHFLYTIDSYQALQRLTDSLLQTVCISVESL
SQALAEKFADIFFLVDSGISQADFQQIRSILVRLVNQLNIGASGYRLGLAQYGTVTKVEF
LLNTFQTKEETLAGVRSFRQSRLQPNQPRYLGSALEYASSNFFTNESGSRASQGFRQFLV
VLSGKDSDDQVFKQTRLIKSLGVTIVGVSLGASMDEIRVIATAPYVYESTINAVPTLKNV
FEAEEVKITLTRDCKAAKLADLVFIVDESGSIGSENFDLVRSFLQSVVSGLDVGDKRVRV
GIVTYSDRATALVYLNSFNQKDSLLNFIKILPYRGGGTNTGAALDFTRENIFTEDAGSRK
DKGVQQVAVVITDGESQDNVTEAAAALRRAGVTVYAVGVQNANEAELNQIASHPPNKHVF
IVDTFDKLKGLKKNLQKTLCYNIIHQAVSVSTRRAGIKEGCVQTDEADMFFLIDHSGSIH
PTDFYDMKKFIIEFINTFRIGPQHVRMGVAKYADSPNLEFDLTDYTDATTLEKAVEEIIQ
VGGGTQTGRALEFMSPHFERAVATRGHKVPEFLVVITDGKSQDKVKVPAERLRKQGVIVY
AIGVKDADVAELEEISGNPKRTFFVNNFDALKPIKDDIITDICSPDVCKDIPGDLVFLID
SSGSIYPEDYTKMKEFMKSVIRKSIIGKNEVHVGVMQFSTVQRLEFPLNVHYTKEEMSTA
IDNMEQMGGGTYTGKAIREVSQYFDAARGGRPSLRQRLVVITDGEAQDAVNRPAAALRAK
GVVVYAIGVVDANTTQLLEISGSPDRMYAERDFDALRDLESQVALELCDPERECKKTERA
DIIFLVDGSTSITLKKFQSMLKFMQSMVNQTTVGKDLTRFGVILYSNEPKSIFTLNQFSS
KQEVSKAIMALKSPYGDTYTGKALNYALQFFDAKYGGRAELQVPQILMVITDGDATDPYS
LNEPSVALRNKGVTVFSIGVEGANKTQLEVMAGHDKSRVFYVDNFDALEKLYKNITQVLC
NSTKPVCEKQSADLVFLVDQSGSISQADYAVMKNFTIDLINSFKVSEDFIRAGFAQFSDI
FQHEFYLNQFYTEKEISDHILKMSQRGGGTNIGLALTSIKEYFEASRGSRKSEGISQNLV
LITDGESQDDVEDPAIELRALGIEVFAIGIGDVHILELLQITGTPESLFTVQNFGSLENI
KQKVVDTICKSKLIPDRPACSIDIAIGFDISRRRNPNEVLVSGHNKLRTFLPEIANYVSS
VQGLCCLGPEPIKPNVAYRIVSRDGNTVEDFSFSEYSNDVVTKVMDFNLAEPTYFNTALL
RSFGEKFKLQSNAGVKVLVIFSDGFDEDVMMLENESESLRQSGVSALLVVALEGARYPTQ
LQMVEFGRGFGYKLPLSIGMPSIGSTILKQIDAVSNRECCDVMCKCSGHEGIRGSRGPPG
SKGTVGQKGHPGFPGEEGLAGGRGLPGPSGPQGVQGCSGVRGQKGFRGLRGERGEDGEDG
LSGVDGEQGLTGQDGARGERGHPGNPGIPGIRGETGVKGQQGLRGDPGQPGADNTSPGAK
GDPGNAGLPGAPGQDGRSGESGIVGNPGLNGRRGRLGDKGAAGPPGDLGLEGSPGASGPQ
GPRGVRGQPGPRGIPGLPGPQGEPGPAGDPGLPGRIGGNGQKGQPGDPGDKGALGPDGPR
GMPGQDGRDGYGPAGPRGAKGDPGFPGYPGLRGEEGLQGPKGYPGPKGNRGRGGNAGLPG
ESGVPGEPGYPGHRGPRGSPGGKAMTDCQLITYIRDNCACSADRSACPAYPTELVFGLDM
SDDVTPGDFGRQRSALLSLLNDISIAESNCPHGARVAVVGYNTYTKYLIRFQDYRRKAQL
LEAVRNIAQERTSNKRQLGAAMRFVGQNIFKRVRAGIMMRKVAVFFSSGPTEGANDIVTA
TMEYRALNIVPAVVSLRNTPDIEQAMQVDDSRNFVFTVLGERATGLRKVRNCAICYDPCR
RAQECAFIQEPVTPQQVDLDLVMVLDSSREIQADEYTGAQQLLSSVVEQLAVSPQPRRAG
RQARVALVQQSTKVEFGLQTYQNVDDMKTYMMQNMQQQGGSLALGQMLDYTLREVLLKAG
QPRSKRAVLTVVGTKTAYRDQAKLHYISQKAKCEGVALFVVAVGDRYNRTEVEELASVPT
QQHLIRLDRLKADEQGYAQRFIRVFFSALNKGVTSYPPPSLRRACDQLGGQEGGQILITG
QGVAQVEDVFGEEVEEDFQEQTGGQIQTGQLDVIDTLIRGNGQKVVSDTHVKARCQLPAD
IGDQCKKYATAWFFDTNVGACSRFWYGGCGGNANRFRTEYECFRTCGNQHPNIVEKTLPT
SFVSKDACFLPQDPGSCDNYTMMWFFDTAQKECARFWYGGCGGNKNRFLTQEECQSLCVM
KIR
NT seq
8292 nt
NT seq
+upstream
nt +downstream
nt
atggaggggaggcgggctgctctggtcggcctcatcatggcggcgtgtttctacagcagc
ggcgctcagacgacagtctgtactgcagaggccgtggcagacatcgtcttcctggtcgat
ggctcgtggagcatcggcgccgagaacttcgagcagatccgtcagtttctgttcacactg
gtcaatagctttgatgtcagccctgatcatgtccgcatcggccttgtccagtacagtgac
aatccactcacagagtttctgctcaacacctttgacaacaaggaggacatcctcaataac
atcatcaaactgccttacagggggggcggaaccctgaccggtaaaggcttggaattcatg
ttgaacgaacactttgtggggaaagctggaagccgagctgtgcagaaagtgccgcaaatt
gctgtggtgatcactgatggcaaatcccaagacgatgtagagtctcatgctaagaacctg
aggagaagagggattgttttgtatgcaattggtatcaaagatgcagatgcaagccagctg
agggagattgcaaatgacgatcagcatgtttacagtgtatcagattttgcagcgctgcag
ggaatttctcagaacatcatccagacgttatgcacgactgtagaagaagccaaacgacaa
ctcctgcaactgtcccaagaatgtgccagagccaccgtggcagacatagtcttcctggtt
gacagctcatctagcattggcgttgataactttgaggaaattaggcagtttctccgaagt
ttcattttagggcttgacatcggccctgacaaaattcggattggcttggctcagtatagc
aatgagacctaccaggagtttctgctgaaagatcacatggacaaggattctctgctggcc
gaagtcgatcaatttccatatcgaacaggaggcagagaaacgggaaaggctattgacttc
ctccagtcagtgtatttcaccaaggaggcagggagccgggcgagccagcgagttcctcag
tttgctgtagtcatcacagacggggactccacggacgatgtagtcgagcccgccaagcgc
ctgcgcgatcaaggagttatcatatttggcattggggtgggagaggttaaccagcaggag
ctcgagtctatcgtaaacctacctgcacaccactttctttacactatcgatagctaccag
gctctacagcggctaacagacagtctgctgcaaactgtatgcatctccgtggagagtctg
agtcaagccttggcagaaaagtttgcagacattttcttcctggtggacagtggcatcagt
caagcagatttccagcagatcagatccatcctggtccgactggtcaatcaactcaacatt
ggagcttctggctaccgtcttggattggcccagtatggtacggttaccaaagtggagttt
cttctcaatactttccaaaccaaagaggagacgctcgctggtgtaaggtccttccgccag
agccgacttcagcccaatcagccacgctacctgggcagcgcactggagtacgccagctct
aacttcttcacgaatgaatcaggaagtcgggcatcccaaggcttccgacagtttctggtt
gttctaagtggaaaagactcggatgatcaggtttttaagcagacacgtctgatcaaatct
ctaggcgtaactatcgttggagtgagcctcggtgcatcaatggatgaaattcgtgtaata
gccacagcaccgtacgtgtacgagtctaccatcaatgcagtgcctacgctgaagaacgtt
tttgaagcggaggaagtgaagatcactctcactcgagactgcaaagcagccaaactggca
gacctcgtcttcatcgtggatgagtcgggaagcatcggctctgaaaacttcgacctggtg
cgctctttcctgcagtcagttgtcagcggcttggacgtcggtgacaagagagttcgggtg
ggtatcgttacgtacagcgaccgagccacagcgctggtctacctcaacagctttaatcaa
aaggacagtttgctgaatttcatcaaaatcctgccttatcgcggaggtggtacaaacacc
ggcgctgccctcgacttcacccgcgaaaatattttcacagaggacgctggaagcaggaaa
gataagggtgttcagcaggtggcggtcgtgatcacagatggtgaatcgcaggataacgtg
accgaggcagcagctgctctccgccgtgctggtgtcaccgtttacgctgtaggagtccaa
aacgccaacgaggctgaactgaaccagatagcgtcccacccccccaacaagcacgtgttc
atagtggacacttttgacaagctgaaaggtctgaagaagaacctgcagaagactctttgc
tataacatcattcaccaggcggtctcagtcagcacaagaagagctggcatcaaagaaggc
tgcgtgcagaccgatgaagcagacatgttcttcctgattgaccactcgggaagcattcac
cccactgacttctatgacatgaagaagttcatcattgagtttattaataccttccgtatc
gggcctcagcatgtccgaatgggcgttgccaaatacgcagattcgccaaacctggaattt
gatctgaccgattacacagatgcaaccacgttggagaaagctgtggaggaaattatacaa
gtaggtggcggcacacagacggggcgggccctggaattcatgagtccacactttgagaga
gctgtggccactcgtggtcacaaagtcccagagttcctggtggtcatcacggatggaaaa
tctcaggataaggtcaaggttccagcagagcgactgaggaagcagggtgtcattgtctat
gccattggggtgaaagacgccgatgtggctgagctggaagagatttccggcaaccccaag
aggactttctttgtcaataattttgatgccttaaagccgatcaaagatgacatcatcaca
gatatctgttctccagacgtttgtaaagatataccaggcgacctcgtcttcttgattgac
agctctggaagcatctatcccgaagactacacaaaaatgaaagagttcatgaaatcggtc
attaggaagtccatcattgggaagaatgaggtgcacgtaggtgtcatgcagttcagcact
gtccaaagactcgagttcccactcaacgtccactacaccaaagaagaaatgtcgacagcc
atcgataacatggagcagatgggtggaggcacgtacacgggcaaagccataagagaagtg
tctcagtattttgatgcagccagaggaggacggcccagcctgaggcagaggctagtggtc
ataacagacggcgaggcccaagatgcagtcaatcgccccgctgcagctctgagggccaaa
ggagtggtggtctatgccattggagtggtggatgccaacaccacccagctgcttgagatc
agtggatccccagataggatgtatgctgagagggactttgatgctttgagggacttggag
agtcaagtggctttggagctctgtgatccggagagagaatgcaagaagacagaaagagct
gacatcattttcttggtggacggttccacaagcataaccctgaaaaagtttcaaagcatg
ctgaagtttatgcagtcgatggtgaaccaaaccacagttggcaaagacctgactcgcttc
ggtgtcatcctctactcgaatgaacccaagtctattttcactctcaatcagttcagctcc
aagcaggaggtttccaaggccataatggctctcaaatccccgtatggagacacgtacact
ggcaaagctttgaactatgctctacagttctttgatgcaaaatatggtggacgggcagag
ttgcaggtgcctcagatcctcatggtaattaccgatggcgatgctactgacccatacagt
ctgaatgaaccatctgtggctctgagaaacaaaggggtcactgtcttcagtattggagtg
gaaggagccaacaagacacagctggaggtcatggctggtcatgataaatccagagttttt
tacgtggataactttgatgccctggaaaaactctacaaaaacatcacacaagtcctgtgc
aactccaccaaaccagtttgtgaaaaacaaagtgctgacctggtcttcctagttgatcag
tcgggtagcattagccaagctgactacgcagtcatgaagaacttcaccatagatctcatc
aacagcttcaaagtcagtgaagacttcattcgtgctgggtttgcccagttcagcgacatt
tttcaacacgagttttacctcaaccagttctacactgagaaggaaatatcggatcacatc
ttgaaaatgagtcagcgtgggggaggaaccaacatcggactggccctgacttccattaag
gagtattttgaggcatcgcggggcagtcgtaaatctgaaggcatctcccagaatttggtg
ttgatcacagatggagaatcgcaagatgatgttgaagaccctgccatcgaactaagggct
ctgggaatcgaggtgtttgccatcggcattggagatgtccacattctggagctgctgcag
atcaccggcacaccggagagcctcttcactgtgcagaactttggcagcttggaaaatatc
aagcaaaaggtggtcgacaccatctgcaaatccaaacttatcccagatcgaccagcctgc
agcattgacatcgccataggattcgatatttctagaagaagaaatccaaatgaggtgctg
gtcagcggccacaacaagctcaggaccttcctgccagagatcgctaattacgtttcctca
gtacaaggcctgtgctgcctcggccccgagcccatcaaacccaacgtagcctatcgaatc
gtgagccgcgacggaaacacagtggaagactttagcttttcggagtacagtaacgacgtg
gtgacaaaagtcatggactttaatttagcagagcctacgtacttcaacactgctctgctc
agatcctttggggagaagttcaagcttcagtccaatgctggtgtgaaggtgctggtgatc
ttctcagatggatttgatgaagatgtgatgatgctggagaacgaatcagagtcactgaga
cagtctggcgtcagcgctctgctggttgtggctctcgagggagcgcgttaccccacccag
ctgcagatggtggagtttggtcgaggtttcggctacaaacttcctctgagcatcggcatg
ccgagcatcggcagcaccatcctcaaacagattgacgccgtgtcaaacagggagtgctgc
gacgtcatgtgcaaatgttcaggacatgaaggcatccgtggctctcggggccccccgggg
tcaaagggcacggttggacagaagggtcaccccggcttccccggagaggagggcctcgct
ggcgggcgaggtttacctggaccgagcggacctcagggagtccagggctgctcgggagtc
agaggacagaagggcttcagagggctgcgaggagaaaggggcgaagacggagaggacggg
ctgagcggagtggacggagaacagggactgacaggacaggatggagcccgaggagagaga
ggacaccccggcaacccgggtatcccaggaattaggggggagacgggggtgaaaggacag
caaggactgagaggagatccgggacaaccgggggccgataacacctccccaggagccaaa
ggagacccaggaaacgccgggctaccgggagcacctgggcaggacggccggtccggagag
tccgggatcgtcggaaacccgggactgaacggaagacggggacgactgggtgacaagggt
gcagctggaccacctggagatctgggactagaaggcagcccaggtgcttctggtccacag
ggtcccagaggggtcagaggtcagcctggcccgagaggaatccccggccttcctggacct
cagggtgaaccaggtcctgctggagacccgggattacctggacggatcggtggtaacgga
cagaagggccaaccaggagatcccggtgataagggcgcactgggaccggacggaccccga
ggaatgccgggtcaggacggccgggatggttacggacccgcaggacctcgaggtgcaaag
ggtgatcccggtttccctggttatcccggtcttcggggcgaggaggggctgcagggaccc
aaaggatatccagggcccaaagggaaccgtggccgagggggtaacgctggtttgccggga
gagtcgggagttcccggagaaccaggatatccgggacacagggggccccgaggttctcct
ggaggcaaagccatgactgactgtcagctgatcacctacatcagggacaactgtgcttgc
tctgctgatcggtcagcgtgcccggcctaccccaccgagctggtgttcggtctcgacatg
tctgatgacgtcaccccgggggactttggtaggcagcgctccgccctcctctccctgctg
aatgacatcagcatcgcagagagtaactgcccgcacggcgcgcgtgtcgctgtggtggga
tacaacacctacaccaagtacctgatccgcttccaggactaccggcgcaaggcgcagctg
ctagaggccgtgaggaacatcgcccaggagaggacgtccaacaaacggcagctgggcgcc
gccatgcgcttcgtgggtcagaacatcttcaaacgagtccgagcaggaataatgatgagg
aaggtggccgtcttcttttctagcgggcctacagagggggctaacgacattgtaacggcc
acgatggagtaccgggccctcaacattgttccagccgtcgtctctctgaggaacactcct
gatattgaacaagcgatgcaggttgatgactcgagaaactttgtgttcacggtgctggga
gaacgggccaccgggctcaggaaggtcaggaactgcgccatctgctacgacccctgcagg
cgtgcacaggagtgcgccttcatccaggaaccagtgacacctcagcaggtggatctggac
ctggtcatggtgctggacagctccagggagatccaggccgatgaatacaccggtgcccag
cagctgctgagctctgtggtggagcagctggccgtgagtccacagccccgccgagccggc
cgtcaggcccgagtagctctggtccaacagagcaccaaggtggagttcggcctgcagacc
taccagaacgttgacgacatgaagacgtacatgatgcagaacatgcagcagcagggcggc
tctttggcactgggacagatgctggactacaccctgagggaggtgctgctgaaggccggc
cagccgcgcagcaagagggccgtcctgactgtggtgggcaccaagacggcctacagggac
caggccaagctgcactacatctcccagaaggccaagtgtgagggggtggcgctgtttgtg
gtggcagtgggtgatcgttacaaccggacggaggtggaggagctggccagcgtgccgaca
cagcagcacctgatcagacttgacaggctgaaggccgacgagcagggctacgcccaacgc
ttcatcagggtcttcttctccgccctcaacaagggagtcacctcatatcctcctccctct
ctgaggcgagcatgtgaccagctgggtggccaggagggaggacagatattgataacgggt
cagggcgtggcacaggtggaggacgtgtttggagaggaggtggaggaggacttccaggag
cagaccggaggacagattcagaccgggcagctggacgtcatcgacactctgatcagagga
aacggccagaaagtcgtctctgacacgcacgtcaaagcccggtgtcagctgcccgctgat
atcggcgaccagtgtaagaaatacgccacagcgtggttctttgacacaaacgtcggtgca
tgctctcggttctggtatggcggctgcggcggcaatgccaaccgctttagaacggaatat
gaatgtttccggacatgtgggaaccagcatcccaacatcgtggagaagactctgcctacc
agctttgtctctaaagatgcctgtttcctccctcaggacccgggcagctgcgacaactac
acgatgatgtggttctttgacaccgcacagaaggagtgtgctcgcttctggtacggcggc
tgcggcggcaacaagaaccgcttcctgacgcaggaggagtgtcagagcctgtgtgtgatg
aagatcagatga
DBGET
integrated database retrieval system
