Octopus bimaculoides (California two-spot octopus): 106872123
Help
Entry
106872123 CDS
T04127
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106872123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106872123
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106872123
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106872123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
CNOT1_CAF1_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
106872123
NCBI-ProteinID:
XP_052823330
LinkDB
All DBs
Position
4:114685774..114748195
Genome browser
AA seq
2340 aa
AA seq
DB search
MNLDSLSLALAEISNSVATLTKKNYKTIVPQINHLTSVHCADADRYLFRCLFSHVDFSGD
GKSGGKDFHQTQYLIQEFTTLFSKPNFVSTLCYVIDNPLQHQKSLKASPQLFPQLSKVLK
LTRVQEVVFGLALLNSSNPDTQNYAANFVKQKLPDLLRSYVDADTNVRQEGGLQDIAIEG
LHLLLTHLVRGKDQLGIGADQKEAFLNTLRKDFPRACVPVVLSPLLYPETEDISLDTFSD
TLTMPVSMNEASLADMVLEAGCACTSSVEECRNTLLQFGPKELTPSSVAKVMGMMAKNPC
GQIDQNSNWNSDKEKDTPGVTTWNVDIFVQIVQELAPKLQWTEVVAELDYANFSIQNKKG
MKLLIQGLIKALTNETFPVKHIYKSWKNSEGQLSFLTHALKNPDIFCLADYPYEPVITDV
LKAAPDEDNKEILTWKSKDLVQALLRLSDLGHYPFVTDLFKFPVQNCPDMLTLGLLQIDL
TWNILKQELLSSLIPIFLNNHPNSAIVLNYAWHYTNLSTNIRTLIMHSMADWYMRSDCQD
QIRLARILDVAQDLKALSMLLNATPFPFVIDLACLASRREYLKLDKWLSDKIREHREPFV
QACVNFLKRRFPAVTSGAVKEEHQTKNRLPTETVQTMLSCLQNYANQVTSHELSEAILTI
AANANQILNKQRQIPPGAVGAKLNQSAINPAQPSPVIVNMAPLPNMNALDMGTPAVSGTF
PQSLATLSSAAAAAVATGAPGSPAKGFPGINQVPAGYGSIQNLTTQLQNLNLQAPLMTSR
NAVYSLGSLGAQATLKQQPPSNIDNKMGELNIFPESSQQFSKDVEDEANSYFQKIYNQPP
HQALSIDEVLEMLKRFRESQNKREREVCQCMLRNLFEEYCFFPQYPERELHITAVLFGGI
IEQGLVTYMSLGIALRYVLEALRKPHASKMYFFGIAALDKFKTRLKDYPQYCQHVAAIPH
FSQFPQHLIDFVEYGATSQEPPSHSQTTQNLTGAGMAIVPAQVPVTTVPSVPKSLQPLSI
PSTTAPSVSNAINSNAISKPGTIPKPSIANATNIDTLIAGQQKEEIAIPPETFQDKVFFI
FNNLSMSNMVQKXXXXXXXXXSKYVPWIAMYIVMKRAILLIQKKFXNEISSXMRTIANIV
FYFYGINFXLXVLLRSDKGVANFSDRSLLKNLGHWLGMLTLAKNKPILQIDIDLKALLYE
AYNKGAQELLYVVPFTAKVLQSCAKSKVFKPPNPWTMAGMNVLAELHQEQELKLNLKFEI
EVLCKNLQLDVSELKATSYLKDLSRLSTIENQLSAPVKPPPSGTPQQDDMSVAVVSASTP
TVISTPTTTIANAIPIPQQPQFRYQDITNLASGISHQIVINEQILLFHNHQSLKQCVRPA
IERAIHELLPPVVDRSIKIALTTCEQITKKDFALDPDENRMRTAAQNMICSMTAGLTLIT
CREPVFMALNNHLKQAFLNVLRNASITQKELVDQAVTQLAQDNTELASAIIQKSAVEKAL
PEMDRRLSTEFELRRHARGEGRRYCDPVVLTYQAERMPEQIRLRVGGVTPVQVAVYDEFA
RNIPGFLPINETRVPSGIITKALPPSYPDGMSQVFDKVIRDIEQNCQQLLNSVTSTHLGL
QLQGVIDAILVARTNRDVPSSSALVQKVVEALVEHYSSSMADQDMMRFCECCLHVLKGLS
DIRVFGPQWTMKQVTRSVFDCREEIKYNLDAFEQLLKNHFLNIQQFDMYLAQQIDNGINY
IVMVFAIALVQKFVIDDKASGLVTEADLHNTIEVLLRIHSRSRPSPDGLAHLVECLRNNG
DCVLLDRAPGGPTSMMQSGISQAREYDDPPWLHEKTENLLREWVNMFHSAAAGRDSTKAF
TAFVQQMHVQGILKTDDLITRFFRLCTEMCVDLCYRALGEQLLNPTSIRTKCFQTLDAFV
RLIALLVKHSGDAANTVTKINLLNKVLGIVAGVLLQDHEIRHTEFQQMPYHRIFIMLFIE
LNAPEPILEAINFQVLTAFCNTFHILRPARAPGFAFAWLELISHRVFIGRMLALTPQQRG
WGMYAQLLIDLFRYLAPFLRNADLTKPTQLLYKGMLRALLVLLHDFPEFLCDYHYAFCDA
IPPNCIQMRNLILSAFPRNMRMPDPFTPNLKVDVLPDIGRPPRILTNFANMIQPETFKKD
LDSYLKSRSPVTFLSDLRSNLQSTDPGSKYNISLINALVLYVGTQAIDYIHNTGYKPSMR
TIAHSSHMDIFQNLAVDLDTEGRYLFLTAITNQLRYPNSHTHYFSCTLLYLFVEANAEAI
QEQITRVLLERLIVNRPHPWGLLITFIELIKNPQFKFWSHEFVRCAPEIEKQVSYSHDLF
NT seq
7023 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcgattcgctgtcgcttgctttggctgaaataagtaattcagtggctacttta
acaaagaaaaattataagactattgtgccgcaaattaatcatctaaccagtgtacactgt
gctgatgcagatcggtaccttttccgctgcctcttttctcacgttgatttcagtggcgat
ggtaagagtggcggaaaagatttccatcaaacccagtatttgatacaagagttcacaact
ctcttcagtaaacctaattttgtctcaactctttgttacgttattgacaatccattacaa
catcaaaagtctttgaaagcaagtcctcagttattcccacaactgagtaaagttttaaag
ttgaccagagtgcaagaggtggtatttggcttggctttgttgaattcgtccaatcctgat
actcagaattacgcggccaactttgttaaacagaaattacctgatttattgcgatcttac
gtagatgcagatactaatgtgaggcaagaaggtggattacaagacattgctattgaggga
ctacaccttcttttaactcatcttgttcgtgggaaagatcaacttggaattggagctgat
cagaaagaggcatttctaaatactttacgcaaagattttcctagggcgtgtgttcctgtt
gttttaagtccattactgtatccagaaacagaagatattagtttagatacattttcagat
actctcaccatgcctgtatcaatgaatgaagcctccttagcagacatggtcctagaagct
ggctgtgcttgtacaagcagtgtggaagaatgtcgaaatacacttttacagtttggtcca
aaagagttaacgccatcatctgtagctaaagtaatggggatgatggccaaaaatccatgt
ggtcaaattgaccagaattcaaattggaacagtgataaagaaaaagacacacctggagtg
acaacttggaatgtggatatatttgttcaaattgttcaggagttggctccaaaattacaa
tggaccgaagttgttgcagaactggattatgcaaatttttctatacaaaataaaaaaggc
atgaaactacttattcaaggcctcataaaagccttaacaaatgaaacctttccagtgaag
catatttacaaatcctggaaaaattccgaaggacagttgtcttttctaactcatgcgttg
aaaaatccagatatcttctgcttagctgattatccatatgagccagtgataacagatgtt
cttaaagccgctcctgatgaagataacaaagaaattctcacatggaaatccaaagacctt
gtccaagctttgcttagactttcagatcttggtcattacccatttgtaacagatctattc
aaatttcctgtccaaaattgtccagatatgttgactttaggattgctccaaattgatctc
acatggaatatcttgaaacaagaacttctatccagtctgattccaattttcctaaataac
cacccaaattcagctattgttttaaattatgcatggcattatactaatctttccactaat
attcgcacattaataatgcactctatggctgattggtacatgaggagcgattgtcaagat
cagattagacttgctagaatattagatgttgctcaagatcttaaggctctgtctatgctg
ttgaatgcaacaccatttccatttgtaattgacctagcatgtcttgcttctcgtcgggaa
tatctaaagcttgataaatggctctcggacaaaataagagaacatagagagccatttgtt
caagcttgtgtaaactttctgaaacgccgtttcccagctgtgacaagtggtgcagttaaa
gaagaacatcaaacaaagaacagactgccaacagagactgtgcaaactatgttatcttgt
ttacaaaactatgcaaaccaagtcacatcacatgaattatctgaagccatcttaactata
gctgctaatgctaatcaaatattgaataaacaacggcaaataccgcctggagctgttgga
gccaaacttaatcaatctgctattaatcctgctcaaccaagtccagttattgtgaatatg
gctccccttcctaacatgaatgctttggatatgggtaccccggcagtgagtggaacgttc
ccacaaagtttggctaccctgagttctgctgctgcagctgctgtagctactggtgcacct
ggttcacctgcaaaaggatttcctggaataaaccaagtcccagctggttatgggtctatt
cagaatttaactacacaattacaaaatttaaacttacaagctccattgatgactagccga
aatgctgtctattctcttggatcactgggtgcacaagcgactctaaaacaacaaccacca
tcaaatatagataataaaatgggcgaactcaacatatttcctgagagtagtcaacaattc
agtaaagatgttgaagatgaagcgaattcctattttcagaagatttacaatcaaccaccc
catcaagccttgtctatcgacgaagtgcttgagatgttaaaaagattcagggagtcccaa
aataaaagagagcgggaagtatgtcaatgtatgctgcgaaatctatttgaagaatattgc
tttttccctcaatatccagaaagggagcttcacatcacagccgtcctctttggtgggatc
attgaacagggattagtcacctatatgtcccttggaatagcattacgatatgtattagaa
gcacttcggaaaccacatgcaagtaagatgtatttttttgggattgcagctttagacaag
ttcaaaactcgattaaaagattatcctcaatattgtcagcatgtagccgctatacctcat
ttctctcagttcccgcagcatctaattgattttgtggagtatggagctacatctcaagaa
ccaccatcacattctcagaccactcaaaatcttacgggagcaggtatggctattgttcct
gcacaagtgcctgttaccactgtacctagcgttccaaagagcttgcagccgttatctatt
ccttccacaactgcaccatcagtttcaaatgctatcaattcaaatgcgatcagtaaacct
gggaccataccaaaaccttccattgctaacgccaccaacatcgacacactgattgctgga
caacagaaagaagaaattgctattccacctgagacgtttcaagataaagtatttttcata
ttcaataatctttccatgtcgaatatggtccaaaaggnnnnnnnnnnnnnnnnnnnnnnn
nagagcaagtatgtaccttggattgctatgtatatagttatgaagagagccattctttta
attcaaaaaaaattttgaaatgaaatctcaagctgaatgagaactattgcaaatattgta
ttttatttttatggaataaacttctaattgtaggtactattgcgaagtgataaaggagtg
gcaaacttttctgatagatctctcttgaagaatttgggacattggctaggaatgcttact
ttggcaaaaaacaagcccattttacagattgatattgatttgaaagctctactttatgaa
gcttataataagggagcgcaagagctactctatgttgtcccatttactgccaaagtcctg
cagtcttgtgccaaaagcaaggttttcaaaccaccaaacccttggacaatggcaggtatg
aatgttttggctgaattgcatcaggaacaagaactgaaattaaacctaaagtttgagatt
gaggttttatgcaagaatttacagttagatgtttcagaactaaaagctacgagttacttg
aaagatttaagtcgattaagtaccattgaaaatcagctgtctgctccagttaaaccacct
ccatcaggaactcctcagcaggatgatatgtctgtagctgttgtaagtgctagtactcca
actgtaatatcaacaccaactacaactattgctaatgctataccaataccacagcaacct
caatttaggtaccaagatattaccaacctagcgtctggaattagtcaccagattgttatc
aatgaacagattttgttgttccataatcatcagagtctaaagcagtgtgtccgtcctgcc
attgaaagagctattcatgaacttcttccacctgttgttgataggtcaataaaaattgct
cttacaacatgtgaacaaataaccaaaaaggattttgcattggatcctgatgaaaacaga
atgcgtactgcagctcagaatatgatttgtagtatgacagcaggattaactctcatcact
tgtcgagaaccagttttcatggccctcaataaccatttgaaacaagccttcttgaacgtc
ttgcgtaatgctagtataactcaaaaagaacttgttgaccaagcagtaactcagttggct
caggacaatacagaacttgcatcagctattatacagaaaagtgcagttgaaaaagctctt
ccagaaatggaccgacgtctttctactgaatttgaactccgacgccatgcacgtggtgaa
ggtcgtcgttattgtgatccagtagtccttacttaccaagctgaaaggatgcctgagcaa
atacgattacgtgttggtggtgtcactccagtacaagtagcagtctatgatgaatttgca
cgcaacatacctggcttcttaccaataaatgaaaccagagtaccatctggcataataaca
aaggcacttccccctagctatccagatggtatgagccaagtatttgacaaagtcattcgt
gacattgagcagaattgccagcaactgttaaacagtgtgacctctacccacctaggttta
cagttgcaaggagtcattgatgctattcttgttgccagaactaatagagatgtaccatca
tcatctgctctcgtccaaaaggttgtcgaggcacttgttgaacattacagcagcagcatg
gccgatcaagacatgatgagattctgtgaatgttgcttgcatgtcctcaaaggacttagt
gacatcagagtttttggtccccaatggacaatgaaacaagttactagatctgtttttgac
tgcagggaagaaataaaatataatttagatgcctttgagcagctgctgaaaaaccatttc
ctcaatattcagcagtttgatatgtaccttgcccaacaaattgataatggaataaattac
attgtaatggtctttgctattgccttggtacaaaaatttgtcattgatgataaagcaagt
ggtcttgtcactgaggctgaccttcataacactattgaagtgttattgaggatacattct
cgttcgagaccttctcctgatggattggcacatttggtggaatgcttgcggaacaatggt
gactgtgtcttgctggatagagcccctggaggtcctacttcaatgatgcaatcagggatt
agtcaggcaagagaatatgatgatcccccttggctacatgaaaaaacagagaatttactg
agagaatgggtgaatatgtttcattctgcggctgcaggaagagacagtacaaaagccttc
actgcatttgttcaacagatgcatgttcaaggtatactgaaaactgatgatttgataaca
agattcttccgattgtgtacagaaatgtgtgttgatttgtgttatcgagctcttggagaa
caactgctcaacccaacatcaattcgaacgaaatgtttccaaacactagatgcttttgtt
cggctcattgccctccttgttaaacattctggagatgctgcaaatactgtgactaaaatt
aacttacttaataaggttcttggaatagtggctggagtgttgttacaggatcatgaaatt
aggcacacagagtttcagcaaatgccgtatcatcgtattttcataatgctgtttatagaa
ttaaatgctcctgaacctattcttgaggctatcaactttcaggtccttacagcattttgc
aatacattccacattcttagacctgcacgagcacctggttttgcattcgcttggctggaa
ttgatctctcatcgtgtattcattggaagaatgcttgccctaacaccacaacagcgaggc
tgggggatgtatgcccaattgttgattgatctattccgctatcttgctccgttccttcgc
aatgcagacctaactaaaccaacacaattactttacaagggaatgttgagggctttgctg
gtgctcttacatgacttcccagagttcctctgtgattaccattatgcattctgtgatgct
attccacccaactgcatacagatgagaaatctcattctgagtgccttccctcgtaatatg
cgaatgccggatcctttcacaccaaatttaaaggttgatgtactcccagatattggcaga
ccaccaagaatcctcaccaacttcgctaatatgatccaaccagagacatttaaaaaggat
cttgattcttacttaaaatcaagatctcctgttacctttttgtcagaccttcggagcaac
ttacaatcaactgaccctggttccaagtacaacatatctctaattaacgctctagtgctt
tatgttggcacacaagctatagattacatccataacactggttacaaaccaagcatgcga
acaattgctcattcctcacacatggacatctttcagaacttggctgttgatctcgatacc
gaaggccggtacttgttcctcactgccataactaatcaactgcgctatccaaacagtcat
acacactatttcagttgtactttattgtatctatttgttgaagccaatgcagaagctatt
caagaacaaataactagggtcctacttgaaagactaatagtgaatcgccctcatccatgg
ggtctgcttataacattcattgaactcatcaaaaacccccagttcaagttctggtctcat
gaattcgtgcgttgtgctcctgaaattgaaaagcaagtatcttatagtcatgacttattt
tga
DBGET
integrated database retrieval system
