Octopus bimaculoides (California two-spot octopus): 106876186
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Entry
106876186 CDS
T04127
Name
(RefSeq) SKI3 subunit of superkiller complex protein
KO
K12600
superkiller protein 3
Organism
obi
Octopus bimaculoides (California two-spot octopus)
Pathway
obi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106876186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obi03019
]
106876186
Messenger RNA biogenesis [BR:
obi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
106876186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_19
TPR_16
TPR_8
TPR_14
TPR_1
TPR_CcmH_CycH
TPR_17
TPR_11
TPR_12
TPR_9
TPR_6
TPR-S
ARM_TT21_N
ANAPC3
TPR_15
FAT
ChAPs
T7SS_EccA1_N
SRP_TPR_like
COG4_N
ARM_TT21_4th
NRDE-2
Sel1
DUF627
DUF4810
Motif
Other DBs
NCBI-GeneID:
106876186
NCBI-ProteinID:
XP_014780112
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All DBs
Position
8:complement(57893371..57926567)
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AA seq
642 aa
AA seq
DB search
MDNKEIKSKLKAAREALKNKNYEEAENICKVILDFDEKNYNALVFRAVANVETKHAEEAI
SYYKQAIEINPDQVLAWQGLCSFYEKNSSSNNKTELIPIYEKLQVLYESEKDKQLEVLKK
YVALCSEFGFVEKAIPVYQKLLCLSGESSTESVKLLQDMSQLLNKHKDISEQYGNVLISN
YRKALDNKDLPADDKKWLAANYIFSLLKNDDQEFLLSEISQLKDSHPDNSTVIEYCLLIE
LDSKIGYLVPSFDDSFKKLMEKLATIDESSAVLSICRGVYSILSKDYKVATEHFREGLER
DPLLFCAHYYLSLSLYYLHDKNLVDKASNIGIKASQKKTGRLTVSVNQLTTGLYLLQAKM
SLENTSLGVLNNMVKLLIDTESSNIEIQITLAYLYIKLEKYQQAEECVEKLAESESAEVV
ALKGWLLFHQGNYEVALQKLLAAVSEYPESSKFLLMLGRIYWQLKDSHTDNQESSNYSEK
SFKSFLQAAKLDPYNCEIFLYLGHFYLHVQQDKEKARKCYQKAFNLDPENSDVGAAFCDI
MMDTGDVGDESVLEYLKSVTTKAGPGGAKWAWLRLGLKYLKNEDPNNAVISFQAALRPDP
LDFHIWECLGEAYINRGSYTAALKAFTKVTELDADSVYSQYM
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggacaataaggaaatcaaaagtaagctaaaggcagcacgtgaagccttgaagaataaa
aattatgaagaagctgaaaacatctgtaaagtcatccttgattttgatgagaagaactac
aatgccttggttttcagagctgtggctaatgttgaaacaaaacacgcagaggaagccata
tcatattataaacaagccattgaaattaatccagatcaagtcctagcttggcagggtctg
tgtagtttctatgagaagaactcttcatccaacaacaagactgaactgattcctatttat
gaaaaacttcaggtcttgtatgaaagtgagaaagacaaacagttggaagtcctgaagaaa
tatgttgctctctgttctgagtttggttttgttgagaaggccattcctgtctatcagaaa
cttctgtgtttatctggtgagtcttctaccgagagtgtcaaactactccaagacatgtca
caacttctcaacaaacataaagatatatctgaacaatatggaaatgttcttatttccaac
tatcgcaaagcactggataacaaggacttacctgctgacgacaagaaatggctggcagct
aattatatattcagtttattaaagaatgacgatcaagaattcctcttgtcagaaatttct
caactgaaagactctcatccagataacagcaccgttatagaatattgtttgttaatagaa
ctggactcaaaaattggttatttggttccaagctttgatgattcttttaaaaaacttatg
gaaaaactggccactattgatgagtcttcagctgtgttaagcatatgtcgtggagtgtat
agtattctcagtaaggactacaaggttgcaactgagcatttcagagaaggtctggaacga
gatcctctgttgttctgtgctcattactacttgtcattgtccctatattacctccacgat
aaaaacctcgttgacaaagccagcaatattggaatcaaagcttcccagaagaaaactgga
cgattaactgtgtctgttaaccagttgacaactggtctgtacctattgcaggcaaagatg
tccttggaaaacacatcccttggtgtgttaaacaatatggtgaaacttctgattgacacg
gaaagcagcaacattgagattcagataactcttgcctatctttacatcaagctagaaaaa
taccaacaggctgaggagtgtgtggagaaacttgctgaatcagaatctgctgaggttgtt
gccctcaaaggttggctgctctttcatcaggggaattacgaagttgccttgcagaaactt
ttggctgctgtgtcagaatatcccgaaagcagcaagtttcttttgatgcttggccgtatc
tattggcaactgaaagactcccacactgacaaccaagagagcagcaactattctgagaag
agttttaaatctttccttcaggctgccaagttggatccttacaattgtgagatatttctt
tatctcggacatttctatcttcatgtacaacaagacaaagaaaaagctagaaaatgttat
caaaaggcttttaatcttgatcctgaaaattccgatgttggtgctgcattctgtgatatt
atgatggatactggagatgttggagatgagagtgttttagaatatttgaagtctgtgact
actaaagctggccctggtggtgctaaatgggcttggttacggttaggattgaaatatttg
aagaacgaggaccccaataatgctgttatttctttccaagctgctctgcgtcccgatcct
cttgattttcatatatgggaatgtctcggtgaggcatacattaatcgaggcagttacacg
gcagctttaaaggcatttactaaggtcactgagcttgacgcagactccgtctacagccag
tacatgtaa
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