Oryza brachyantha (malo sina): 102707524
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Entry
102707524 CDS
T02995
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102707524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102707524
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102707524
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
102707524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Glyco_hydro_84_hel
Motif
Other DBs
NCBI-GeneID:
102707524
NCBI-ProteinID:
XP_006662050
UniProt:
J3N4T4
LinkDB
All DBs
Position
10:complement(15224531..15244033)
Genome browser
AA seq
2417 aa
AA seq
DB search
MIPFNSAVAEEVRALVQGVDDSTFDSTHRELCQLADCSPDGCSLLLRVCLDEVLLNAEAA
KYSRLKNDLLSIVFKYCLDKPYFSTSFCDALKTAHVNDLFLVTLSNELNLSAGERVGIGL
ALSDSENLSLILQGQKFSIAEIEEICSNPAHVLSNDQIHDIVVFLHQTDGLSKHMDSFTN
IISLLNVKERPFYVPVPTKEGNARSTISSRHMELCTGSFDDDFDSLLSEIGKEISMSDII
TELGYGCTSDVAHCKEILSLFEPLDDMGISKLLGAVVCTRVGLADPHNTYSTFMLAVGNS
QPSDPSQFTAWNIDVLVDSINEIAPRTNWITVVENLDHEGFCIPDEAAFCLLMSIYYQAC
KDPFPLHVVCGSMWKNTEGQLSFLKHAVAAPTDIFTFKHCSRKMVFPELANRMQGNQAWY
CLDLLEVLCRLAELGYATTVRSMLDYPLIHCPDVLLLGVSHINTAYNLLQYEVLSCVFPM
ILKDTTYSSLINSLWHVNPCLTLRGFVDSHSDINCLLRTVEICQDLTILSAVLDSTPFTF
SIKLATVAFRQNHNNLEKWLVEKLTAKGETFLEECVKFLKEIMINTTYEAVEGAVQQPQA
MISDICRESCPLIIKVLQSHSGQLLSNQFVEELRRVEAVHESRNHGVVGRDVPTSEGGAD
DIEAQANIYFHQMFSGQISVDAMVQMLARFKESTNKRELSIFNCMVSNLFEEYKFFPKYP
DTQLKLAAVLMGSLIKHQLVAHLGLGIALRSVLDALRKSIDSKMFMFGTTALEQFMDRLI
EWPQYCNHILQISHLRATHAELVAAIERALAKISSSQNEPNVGSMLSADQHGSSSIGNME
ASEASWQLINPTPTQLERSHQQRHQGFLGERSKGSATIIQAKNILSSGQTPLASAPGDLA
VNLKAATPPSSQASPHHSTTVSAPQPTGFLRSRSSAPSGIRQPSFTTGFGAALNIETLVA
AAERRDTPIEAPPSEVQDKIFFMINNISTSNMEAKAREFNEVLQEQYYPWFAQYMVMKRA
SIEPNFHDLYLKFFDKVNSKSLNKEMVKATYENCKVLLQSDLIKSSSEERSLLKNLGSWL
GKFTIGRNQTLRAKEIDPKILIVEAYERGLMIAVIPFTSKILEPCQSSIAYRPPNPWTMG
ILSLLVEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPSSLLKDRIRQIEGNPDFSNKDV
GASQAPVVAEVSSSIMPTINHAEPQPEINSASRATSLPNMLSQYAAPLRLPLNNMVEDDK
AALIMPEQVTSHSLSQVSPSQTPSLSSSSFSLSQLMAAIPRADIYFRINEKLSSFGSLQY
SKIMDMALDKAIKEIIGPVIQRSVTIASRTTKELILKDYAMEADDSAVSRSAHLMVGTLA
GSLAHVTSKEPLRVALSSHLRSLIQGITNNSDTTDQIMLILVNDNLDLGCALIETVATRK
AVEMIDGEIKQPFSQLRRQKELLGSAYYDAFPYTQGLKRVPDALRPKPTGHLSAAQRRVY
EDFITVWHSQSSQNAGASATATAMAVAPSNPSVPRVYSPNSALTDSSSFSNLHTAPFISA
NQTTELAQEESDRGATHLSSLSAKIGTSDAPSQVIGTTNVASVFPPTVPNDLPVGELATA
NKDLVTSAPLSPTTAVDRMGSVFAEPLNTGDALERYQQVSKKLDAFVANDGKDAEIQSVI
AEVPDILLRCVNRDEAALAIAQKVFRSLYDNASNSTYVAWLLAALVAIRDVCKLVVKELT
SWVIYSDEDKKFNIDIIVGLIRSELLNLGDYNVHLAKIIDGGRNKAATEFAISLVQTLIT
QESISISEVYNVVDALSKLAIRPSSPESVQQLIEIARSFSAMKDENIRQSRDKKVLSGRP
LMNKEENNANDVAFTDAVGFQEKVAVSFSEWCNICDHPTMGDSAYTHYIVQLQQDGLLKG
DDLTDRFFHILAELAVAHSVVSEQVVAPGGISQQPTQQLQISYFSIDSYSKLVALVVKYS
SVDIGPSKGSLFNKILSIIVRIVQRDAEEKKVSFNPRPYFRLFINFLSELTTNDLHHDSS
NFQVLTAFANAFHVLQPLRVPVWSFAWLELVSHRSFMPKLLLCNAQKGWPFFQRLLVDLF
KFMEPHLRNAELGQPIHLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVI
LSAFPRNMRLPDPSTPNLKIDLLAEISIPPRIMSDVDGALKSKQLKTQVEEYLKRPEGSF
LTDLKQKLLLSPNEAIIAGTRYNVPLVNSLVLSVGMQAVHQLQLTKVNASASGQQMNQSP
LDIQIETATDVFRNLVMNSDTEGRYLLLNAIANQLRYPNNHTHYFSFIILYLFSEATQEI
VQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYSFWARSFTRCAPEIEKLFESVARS
CGGKAGDDGVGLPDGGH
NT seq
7254 nt
NT seq
+upstream
nt +downstream
nt
atgatccctttcaattccgccgtggccgaggaggtccgcgccctggtgcagggcgtcgac
gactccaccttcgactccacccaccgcgagctctgccagctagcagactgtagtcctgat
ggatgcagtttgctgcttcgagtttgtttggatgaagtgctgttgaatgccgaggcggca
aagtactctcgcttgaaaaatgatctcttatcaattgttttcaagtattgtctggataaa
ccatactttagcaccagtttttgtgatgcactgaagacagcacatgtcaatgatttgttc
cttgtgacattgtcaaatgaacttaatctatctgctggagagagggttggcattgggctg
gcactgtcagattctgaaaatctaagcttgattcttcaagggcaaaagttttcaattgct
gaaatcgaggagatctgctcaaatccggcccatgttttatcgaatgatcaaattcatgac
attgttgtgtttcttcaccagactgatggcctctcaaagcatatggattctttcactaac
atcatctccctattaaatgtcaaagagaggccattctatgttcctgtcccaaccaaagaa
ggcaatgctcgatcgacaatttcttcaaggcatatggaactgtgcactggtagctttgat
gatgattttgattcccttctatctgaaattgggaaagaaataagcatgtctgacattatt
actgaattgggctatggttgtacttctgatgttgctcattgtaaagaaatactgtcactt
tttgagcctcttgatgatatgggaatctctaagttgcttggagcagtcgtttgcactcgg
gttggtcttgctgatcctcacaatacatattcaacgttcatgttggctgttggcaacagc
caaccaagtgacccatctcaatttactgcatggaatattgatgttcttgtggattcaatt
aatgaaattgccccaaggactaattggattactgtagtggaaaatcttgatcatgagggt
ttctgtatccctgacgaagcagcattttgtttgttgatgtctatatattatcaggcctgc
aaggatccgtttcctcttcatgtggtctgtgggtcaatgtggaagaatacagaagggcag
ttatcattcttgaaacatgcagtggctgcaccaactgatatatttacattcaaacattgt
tccaggaagatggtatttccagaattggctaaccgcatgcaaggcaatcaggcttggtac
tgcctagatcttctagaggtcttatgccgacttgctgaacttggttatgcaacaacagtt
cggtcaatgcttgactaccctctgattcattgccctgatgtcttacttcttggcgttagc
cacatcaatactgcatataatctcctccagtatgaagtattatcctgtgttttccctatg
atcctgaaggacactacatacagtagtcttataaactctctctggcatgtcaacccttgc
ctcacacttcgtggatttgttgattcacattctgacataaattgccttctgagaactgtt
gagatatgccaagacctaacgatcctatctgcagtccttgattccaccccatttacattt
agcatcaaacttgccacagttgcctttaggcaaaaccataacaatcttgagaaatggttg
gtcgaaaagttgactgctaaaggagagacttttcttgaggaatgtgttaaattcttgaag
gaaattatgatcaacacaacttatgaggcagtggaaggtgctgtccaacaacctcaagcc
atgatttcggatatttgccgagaatcttgccctctaattataaaggttctgcaatctcac
tcgggccagctgttgtccaaccaatttgtggaggaactaaggagagtggaagcagtgcat
gaatcaaggaatcatggtgttgtaggaagggatgtccctacttctgaggggggtgctgat
gacattgaagcacaggcaaatatatattttcaccagatgttttctggacagataagcgtt
gatgctatggtacagatgcttgcacgtttcaaagaatccacaaacaagagggagctttcg
attttcaattgcatggtctcaaatctgttcgaggagtacaaattcttcccaaaatatcca
gatacacaacttaagttagctgctgtgctgatgggatccctcattaagcatcaacttgtg
gctcaccttgggctaggaattgctctacgtagtgttcttgatgccttgcgtaaatctatc
gattcaaagatgttcatgtttggaacaacagcgctagagcagtttatggatcgtttaata
gagtggccacagtactgtaaccatatattgcagatatcacatcttcgtgcaacacatgcc
gaattagttgctgcaattgagcgagcacttgccaagatatcatcaagtcaaaacgagcca
aatgtaggcagcatgctttctgcagatcaacacggttcatcatctattggaaatatggag
gcttctgaagcatcatggcagctcatcaatccaactccaacacaacttgaacggtcacac
caacagaggcaccagggtttccttggggagagatccaagggctctgcaaccatcattcaa
gccaagaatattctttctagtgggcaaacaccacttgcttcagcacccggtgatttggct
gtcaatctaaaggctgccacaccaccatcctcacaagcttctcctcatcattcaaccact
gtatcagctccacaacccactggttttctgcggtctagaagttcagctccttcaggcatt
cgacaaccttccttcaccacaggatttggagctgcgttgaatattgaaactctagttgcc
gctgcagaacgaagagatacgcctattgaggcccctccttctgaagttcaagacaagata
ttctttatgataaataacatttccacttctaatatggaggctaaggcaagagaatttaac
gaggttttgcaagaacagtattatccctggtttgcgcaatatatggtcatgaaaagagca
agtattgaaccaaattttcatgacttgtatttgaaattttttgacaaagttaactcaaag
tcattgaataaggaaatggttaaagctacatatgagaactgcaaggttttattacagtct
gatctcataaaatctagttcagaagaacgttcattgctaaaaaatcttggtagttggcta
ggaaagttcactataggaaggaatcaaacattacgagcaaaggaaattgatcccaaaatt
cttatagtagaggcatatgaaaggggattgatgattgctgttatcccatttacatcaaag
attctggaaccttgccagtctagtatagcataccgtcctccaaatccttggacaatgggt
attcttagccttctcgttgagatctataacttacctaatctcaagatgaacctgaagttt
gacatcgaggtcttgtttaagaatcttagtgttgatatgaaagatgtgaaaccatcttct
ctactgaaagatcgtattcggcaaattgagggaaatccagacttttcaaataaagatgtt
ggtgcatctcaagcaccagtagttgcagaggtttcctctagcatcatgcctacaataaat
catgcggaaccacaaccagagataaatagcgcttcccgtgctacaagccttccaaatatg
ttaagtcagtatgcagcacctctgcgtcttcctctaaacaacatggtagaagatgacaaa
gctgctttaatcatgcctgaacaggttacctcacacagtttgagccaggtttcaccatca
caaacaccatcattatcatcgtcttcattttctcttagccagctcatggcggcaatccca
cgtgcagatatatatttcagaatcaatgaaaagcttagctcttttggctcgttgcaatac
agcaaaatcatggatatggctttggataaggccatcaaagagattataggtcctgtcatt
cagagaagtgttacaatagccagccgaacaactaaggaacttattctaaaggattatgca
atggaagctgatgatagtgctgtatctcgctctgcacatttgatggtcggcacactagct
ggaagtctagcccacgttacatccaaggagcctcttcgtgttgctttatcatctcatctc
cgcagtcttattcagggtataactaataacagtgataccacagatcaaattatgcttatt
ctagtcaatgataatctggatcttggatgtgccctaatagagactgttgcaacacgcaag
gctgttgagatgatcgatggggaaatcaagcagcccttttcacaactaaggagacaaaaa
gagctacttggatctgcatattatgatgcttttccttacactcaaggtcttaagcgtgtt
ccagatgctcttcgccctaagcctactggccatttatctgctgcccaacgacgagtgtat
gaggacttcattactgtatggcacagtcaaagtagtcaaaatgctggtgcttcagctact
gctacagcgatggcagttgctccaagtaatcccagtgtacctcgagtttacagtccaaat
tctgcactgacagactccagtagcttttccaatctccatactgctccattcatatccgca
aatcagacaacagagctggcacaggaagaatcagatcgtggcgctacacatctttcaagc
ctttctgcaaaaattggtacgagtgacgcaccttcccaagttattggaaccacaaatgtt
gcatctgtttttccacctacggttcccaatgaccttccagtgggtgaactggcaactgca
aataaagatcttgtcacttcagcaccactttcacctacaactgctgttgatcgtatggga
tctgtttttgcggaacctttgaatactggcgatgcgctggagagataccaacaagtttca
aaaaagctggatgcttttgttgccaacgatggcaaagatgcagaaattcagtctgtcatt
gcggaagttcctgacatcttacttagatgtgtcaatcgagatgaagctgccttggctatt
gcacagaaggttttcagaagtttgtatgacaatgcatcaaacagtacatatgttgcatgg
ctcctagcagctttggttgcaatacgtgatgtttgcaaacttgtcgtcaaagagttaacg
agctgggtaatatattctgacgaagataagaagtttaatatcgacataattgttggacta
attcgttctgaactgcttaaccttggggattacaatgttcatttagcaaagatcattgat
ggcggaagaaacaaggctgcaacagagtttgctatatcacttgtccagacattgattacc
caagaatcaattagcatctccgaggtttataatgttgttgatgccttatcaaagcttgca
atcaggcccagttctcctgaatcagtgcagcagttgattgaaattgccaggagtttttct
gccatgaaggatgaaaatattcggcagtcaagggataaaaaggttttatccggtcgtcct
ttgatgaataaagaagaaaataatgctaatgatgttgcgttcactgatgctgttggtttt
caggaaaaggtcgcagtatcattctctgaatggtgtaatatatgcgatcatcccactatg
ggtgattcagcatacactcattacattgtacagctacaacaggatggcttgctaaaggga
gatgatttgaccgaccgctttttccatattctcgcggaacttgctgttgcacactctgtg
gtctctgagcaagtagttgctcctggagggatttctcagcagccaacccagcaactccag
atctcatacttctcgattgattcatattcaaagcttgtggctttggtagtaaagtactcg
tctgtggacattggaccgagtaaaggaagcctttttaataagattctttctatcatagtt
aggattgttcagagagatgctgaagaaaagaaagtttctttcaaccctcgaccgtatttt
cggttgtttataaatttccttagtgaacttactactaatgatcttcaccatgatagttct
aattttcaggttttgacagcatttgccaatgctttccatgtgcttcaacccttgagagtt
cctgtatggagttttgcttggcttgagttggtaagccatagaagcttcatgccaaagcta
ttactgtgcaatgcacagaagggctggccattcttccagaggttgcttgtcgatttgttc
aaattcatggaaccacatttaagaaatgctgaactgggacaacctatacacctgttatac
aaaggaactttgagagtgttacttgtgctactgcacgacttccctgagttcctttgcgat
taccacttcagtttctgtgatgtgattccccccagctgcattcaaatgcgtaacgtcatt
cttagtgcttttccacgtaacatgagacttccagatccctctactccaaatttaaagatt
gatcttcttgctgagatttcaataccgccgagaatcatgtctgatgttgatggtgccttg
aagtcaaagcagttgaagacacaggttgaggagtaccttaagagaccagaaggatcattt
ttaactgatttaaagcagaagttacttctatctcccaatgaagccattattgctgggact
cgttacaatgtacctcttgttaattcacttgtgctctctgtgggcatgcaggctgtgcat
cagttacagcttactaaagtgaatgcatcagcgtcggggcagcaaatgaaccaaagtcca
ctggatatccagattgaaacagctacagatgtcttcagaaaccttgtcatgaattcagat
actgaaggtcgctacctactactcaatgcgattgcaaaccagctgcgctatccaaacaac
cacacacactatttctccttcataatcctctacttgttttctgaggccactcaggaaata
gtccaggagcagataactagggttcttttggaacgcctaatagttaaccgacctcacccg
tgggggctactcattactttcattgagcttataaagaatccacgctatagtttttgggct
cgatcatttactcgctgtgcacctgagatcgagaagctgttcgagtctgttgcaaggtct
tgtggaggaaaagctggagacgacggagttggtctccccgatggtggccattaa
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integrated database retrieval system
