Oryza brachyantha (malo sina): 102711380
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Entry
102711380 CDS
T02995
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102711380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102711380
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
102711380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_16
TPR_14
TPR_1
TPR_11
TPR_8
TPR_17
TPR_12
TPR_CcmH_CycH
TPR_7
TPR_6
TPR_9
TPR_19
ARM_TT21_C
TPR_15
BTAD
Motif
Other DBs
NCBI-GeneID:
102711380
NCBI-ProteinID:
XP_015697388
LinkDB
All DBs
Position
10:complement(14877079..14884104)
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AA seq
1196 aa
AA seq
DB search
MPETAAEANLRKQLEQTLADEPSSPLHHYNLGVFLWDRAEAEADAAATEEEARRLRAVAA
EHFLAAAKLNPNDGVPFRFLGHHYARAGDAQRAAKCYQRAATLNPDDAEAGEALCDLLDL
EGKESLEVALCKEAAGKSPRAFWAFQRLGYLQVHQKKWSEAIQSLQHAIRGYPTCADLWE
ALGLAYHRLGMFTAAVKSYARAIELDGSRVFALIESGNIQLMLGYFRKGVEQFCSALEMA
PHNHSAYFGLASALLAWARQCVMTGAFGWAASLLKEASDAAKVCTSLTGNLSCVWKLHGD
AQLALARCFPWDDGNIKRGMDDGTFRAAVLEWRNTCLSAANGAKFSYQRALHLTPWEANI
HNDTAICLDLIYTIEENNSLDPIVWELPEKMALGGLILEPVNKDFWVTLGSVSSNQALKQ
HSFIRALHLDTSLSEAWAYLGKIYRQSGDKLLAREAFDRARSIDPSLALPWAGMSAENHH
QPRDGLVNESFESCLRAVQILPLPEFQIGLGTIAAHSGELLLSPQVLMAVRQAVHRAPHY
PESHNINGLVSEVRSDFQSAIASYRQARFALGMMHNSETDNRCHIADVSVNLARSLCKAG
LATESVRECEELKRQGFLSTDGLQIYAFSLWKLGRHDEALSVSRNLAESLSSMNQESATA
ALGFICTLTYNISGKDSAAAVIHKLPGQLNYSTQLKFIISALDALHPNKRFQLPQLSIPP
RLTSYEVMSEVHSNIALGKAIGGELDKVLRVDGGLSYLKRVLHMYPDCSLVRNHLGSLLL
SSEDWMASHKTVRVTSLSHGYTSNRGLRSPHQIQACAAVSCYATCTSYPKFSFPTCEDQY
LSGYNAICHLQRWVHLEPWNQDARRLLVLAIFQKAREEKYPKHICTILKRLILQVMSSGN
KSQENKVVQYGNYLLLLLTSEVSLQSGDYGNCIAQATEALRVTSSSVDTFLAHLQLCRAY
VMQGNCLNSRSEYMKCLQSRTDTEIGWVMLKQLASMCSLEGTSDEIEVHLRECIEKKGSN
ASRWLSLFYLACAQCSVWHEDFASAEKVIAQACAEGDTDSCVLFLNGAISMDIAWRFAAP
QFIPRAASSLRKAQQKSLASLPIVSLLLAQAEGSLGSKAKWEKNLRLEWFSWPPELRPAE
IYFQMHLLATQSSAAASQQNQLVETIQTPEKWLLRAIHLNPSCSRYWTALMQLVYV
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaaccgcggcggaggccaacctccgcaagcagctggagcaaaccctcgccgac
gagccatccagcccgctccaccattacaacctcggtgtcttcctatgggaccgcgcggag
gcggaggcggacgcagcggcgacggaggaggaggcgaggcggctccgtgcggtggcggca
gaacacttcctcgctgcggccaagctgaaccccaacgacggcgtccccttccgcttcctc
ggccaccattatgcgcgcgccggcgatgcgcagcgagcggccaagtgctatcagcgggcg
gcgacgctcaaccctgacgatgccgaggctggggaggctctatgtgatttgctagatttg
gagggaaaggaaagcttagaggttgctttgtgtaaggaggcggctggcaagtcaccccgg
gcattttgggcgttccagaggcttgggtacttacaggtccatcaaaagaaatggtcagag
gctatacagagccttcagcatgcaatacgaggttacccaacatgtgcagatttatgggaa
gcacttggtctggcataccaccgtttgggcatgtttactgcagcagtaaagtcatatgcg
cgagctattgaactggatggttctagggtcttcgcattgatagaaagtggaaatatccag
ctaatgcttggttattttaggaagggtgttgaacagttctgctctgccttggagatggct
cctcataatcattctgcatactttggtcttgcatctgcactgcttgcttgggcaaggcag
tgtgtgatgactggggcctttggctgggcagctagtcttttgaaggaagcatcagacgct
gcaaaagtttgtacttccttgactggaaacctttcctgtgtttggaaattgcatggggat
gctcagcttgcacttgcaaggtgctttccatgggatgatggtaatatcaagaggggtatg
gatgatggtactttcagagctgctgtacttgagtggagaaatacatgtttgtctgctgca
aatggtgcaaaattttcataccaacgtgcattgcatctcactccctgggaagctaatatt
cacaatgacactgctatatgtcttgatctcatttataccattgaggagaataacagtcta
gaccccatagtttgggagttgccagagaaaatggcgttgggtgggttgatattggagcca
gttaataaggatttttgggttacattgggttcagtatcaagtaatcaagctttaaaacaa
cattcttttattagagcactgcatcttgatacatctctctctgaagcttgggcgtacctt
ggaaagatttacaggcagtcaggtgataagctgttggcaagagaagcatttgatcgagct
cggagcattgatccttcattggccttgccatgggcaggaatgtcggctgaaaaccatcac
cagcctagggatggcctggtaaatgaatcttttgaaagctgcttgcgggctgtgcagata
ctacctctgccagagttccagattggtcttggaacaattgccgctcattctggtgaactt
ctattatcacctcaggtattgatggcggtaaggcaagctgttcatcgagcacctcattac
ccagagtcgcacaatataaatgggttggtttctgaagtgcgatcagatttccaatctgca
attgcatcgtaccgtcaagcaagatttgctttaggtatgatgcacaactccgaaacagac
aaccgatgtcatattgctgatgtttcggtgaatcttgcccggtcactatgtaaggctggt
cttgcaactgagtcagtgcgggagtgtgaagaattgaaaagacaaggatttctgagtact
gacggattgcagatatatgctttttcattgtggaaacttggtcgacatgatgaagctctt
tcagtatcaagaaacttggctgaaagcttatccagtatgaaccaggagagtgcaactgcg
gctttggggttcatatgcacgttgacatacaacatctctgggaaggactccgcagctgcg
gttattcataaattgcctggtcaactcaattacagcacacagctgaaatttattatctct
gcattagatgctttgcatccaaacaagcgttttcaattacctcagctgagtatccctcct
agacttacatcctacgaagtgatgagcgaagtccactcgaatattgctcttgggaaggcc
attggtggggaattagacaaggttttaagggttgatggtggtctgtcctacctgaaaagg
gttctccacatgtatcctgattgcagtttagtaagaaaccatcttggatctctgctgctg
tcaagtgaagattggatggcctctcataaaacagtaagggttacttcattgtcgcatggc
tacacatccaacaggggcctaagatctccacatcaaattcaagcatgtgcagcagtttct
tgctacgctacctgcacttcttacccaaaattctctttcccaacatgtgaagaccaatac
ttaagtggatacaatgcaatatgccacctgcaaaggtgggttcacctagaaccatggaac
caagatgcacgtcgcctgcttgtacttgccattttccaaaaagcacgtgaggagaagtac
ccaaaacatatctgcacgattttgaagaggttgattttgcaagttatgtccagtggtaac
aagtcacaagaaaataaagttgttcagtatggaaactacttgctacttcttttgacttca
gaggttagtttgcaatctggtgactatggcaactgtattgctcaagctactgaagctctc
agagtaacttcttcaagtgtggatacttttttggcacacttgcaactatgtcgagcctat
gtgatgcaaggcaattgtttgaactctaggagtgagtacatgaaatgccttcaaagccgt
actgatactgaaattggctgggtaatgcttaagcagcttgcatctatgtgttcactggaa
ggtacctctgatgaaatagaggtacatctccgagaatgcattgaaaagaaaggtagtaat
gcatccagatggttgtctcttttctatctagcatgcgctcagtgctcagtatggcatgag
gactttgcaagtgctgaaaaagttattgctcaggcatgtgctgaaggggatactgacagc
tgcgtattatttctcaacggcgcgatcagtatggacattgcctggaggtttgcagcccct
caattcataccccgtgcagcttccagcctcagaaaagcacagcaaaaatcactagcttct
ttacctattgtctctctcttactggcccaagcagaaggcagccttggctccaaagccaag
tgggagaaaaaccttcgcctagaatggttctcttggcccccagaattgaggcctgctgag
atctatttccagatgcatcttctggcaacgcagtcaagtgcagcagcttcccagcagaac
cagctagtggaaaccattcaaaccccggagaagtggcttctcagggccatacacctgaac
ccgtcgtgctccaggtattggacggctctgatgcaactcgtgtacgtgtaa
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integrated database retrieval system
