Ochrobactrum sp. BTU1: KMS41_06205
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Entry
KMS41_06205 CDS
T09943
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
occ
Ochrobactrum sp. BTU1
Pathway
occ03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
occ00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KMS41_06205 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
occ03021
]
KMS41_06205 (rpoC)
03400 DNA repair and recombination proteins [BR:
occ03400
]
KMS41_06205 (rpoC)
Enzymes [BR:
occ01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KMS41_06205 (rpoC)
Transcription machinery [BR:
occ03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KMS41_06205 (rpoC)
DNA repair and recombination proteins [BR:
occ03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KMS41_06205 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QWK76727
LinkDB
All DBs
Position
1:complement(1272500..1276702)
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AA seq
1400 aa
AA seq
DB search
MNQEVMNLFNPQAPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTA
LIGAEAIFELLASMDLPNIAADLRVELAETTSELKTKKLMKRLKIVENFMESGNRPEWMI
MKIVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVADKEPGEGMVFADMGELQHALE
NKVVTLHTKIKGRFKTVDAEGKPVSKVYDTTPGRMITGELLPKHANVPFDICNQEMTKKN
ISKMIDHVYRHCGQKETVIFCDRIMQLGFAHACRAGISFGKDDMVIPDSKAKIVAETEAL
TTEYEQQYNDGLITQGEKYNKVVDAWGKATDKITEEMMARIKAVEFDPVTGRQKQMNSVY
MMSHSGARGSVNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISEVDCGAEIGLTMQPIVDAGQIVAPIGQRVLGRT
ALDPIINPATGEVIVEAGRMIEEKDVEVIEKAGIQSIRIRSALTCETRNGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSYLEASYEGTVKLRNRN
VVRNSDGNLVVMGRNMAVLILDSTGKERAVHRVTYGSRLFVDEGDAVKRGQRIAEWDPYT
RPILTEVEGYIEFEDLVDGLSVSETADESTGITKRVIIDWRSTPRGADLKPAMVIKDKSG
KIAKLSKGGEARFLLSVETILSFEPGAHVNAGDVIARLPMESAKTKDITGGLPRVAELFE
ARRPKDHAVIAEIDGTVRFGRDYKNKRRIIIEPNDDTIEPVEYLIPKGKPFHLQDGDVIE
KGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKIE
ITESGDTGYIPGDHVDRIELDEINDRLIEEGKKPGSGNPVLLGITKASLQTPSFISAASF
QETTRVLTEAAVAGKMDTLQGLKENVIVGRLIPAGTGGMTNQIRRIATARDELIIDERRK
STGSSEANVMLADMTNNAAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatcctcaggctccggcacagacgttcgattcc
atcagaatctcgattgccagccctgagaagattctgtcctggtcatacggcgagatcaag
aagccggagacgatcaactatcgtacgttcaagcctgaacgcgatggtctcttctgcgcg
cgtatctttggcccgatcaaggattatgaatgcttgtgcggcaagtacaagcgtatgaaa
tacaagggcattatctgcgaaaagtgcggcgtggaagtcacgctctcgcgcgttcgtcgc
gagcgcatgggtcacatcgaactcgcagcgcctgttgctcacatctggtttctgaagtcg
ctgccttcgcgcatcggcacgctgctggacatgacgctcaaggatatcgagcgcgtcttg
tacttcgaaaactacatcgtgaccgaaccaggtctgacttcgcttaaggagcatcagctt
ctttcggaagaagaatacatgatcgctgtcgacgagttcggcgaagatcagttcacagcc
cttatcggtgcagaagctatcttcgaactcctggcttcgatggatctgccaaacatcgct
gcagacctgcgcgttgaacttgcagaaaccacttcggaactgaagacgaagaagctgatg
aagcgtctcaagattgttgagaacttcatggaatccggcaatcgtcctgaatggatgatc
atgaagatcgttccggtcattccaccggatctgcgccctctggttccactggatggcggt
cgttttgctacgtccgatctcaacgacctttaccgtcgtgtgattaaccgtaacaaccgt
ctgaagcgtctcattgaactgcgcgctccgggcatcattatccgtaacgaaaagcgtatg
ttgcaggaagctgttgacgcgctgttcgataacggccgtcgtggccgcgtcatcaccggt
gctaacaagcgtccgttgaagtcgctctccgacatgctcaagggtaagcagggtcgtttc
cgtcagaaccttctcggtaagcgcgtcgactattctggtcgttcggttatcgtgaccggt
cctgaactgaagctgcaccagtgcggcctgccgaaaaagatggcgctcgaactcttcaag
ccattcatctacgctcgtcttgacgccaagggttactcctcgactgtcaagcaggcgaag
aagcttgttgaaaaggaacgtccggaagtttgggatatcctcgacgaagtcatccgtgag
catccggttctcctgaaccgtgcgcctacgctgcaccgtcttggtattcaggcattcgaa
cccacgctgatcgaaggcaaggccattcagctgcatccgctcgtttgtacagctttcaac
gctgacttcgacggtgaccagatggctgttcacgttccgctgtcgcttgaagctcagctt
gaagcgcgcgtgctcatgatgtcgaccaacaacatcttgcacccagcgaatggcgcacca
atcatcgttccttcgcaggacatggttctcggcctctactatctgtcgatcgtggcagac
aaggagccgggtgagggcatggtgtttgccgatatgggcgaacttcagcatgcacttgag
aacaaggttgtcacgctgcacaccaagatcaaaggccgtttcaagacggttgatgcggaa
ggcaagcctgtttccaaggtttatgacaccacgcctggtcgcatgatcactggtgagctt
ctgccgaagcacgccaatgtgcctttcgatatctgcaatcaggagatgacgaagaagaac
atctccaagatgatcgaccacgtctaccgccattgcggtcagaaagagacggttatcttc
tgcgatcgcatcatgcagctcggcttcgcccatgcatgtcgcgccggtatttccttcggt
aaggatgacatggtcattccagactcgaaggccaagatcgttgcagaaaccgaagctcta
acgactgaatacgaacagcagtacaatgacggtctgattactcagggcgaaaagtacaac
aaggtcgttgatgcctggggtaaggcgactgacaagatcaccgaagaaatgatggcccgc
attaaggctgttgaattcgatccggtgaccggacgtcagaagcagatgaactcggtctac
atgatgtctcattcgggtgcccgtggttcggtcaaccagatgcgtcagctgggcggtatg
cgtggtcttatggccaaaccgtcgggtgaaatcatcgaaaccccgatcatttcgaacttc
aaggaaggcctgacggttaacgaatacttcaactcgacccacggtgcccgtaagggtctt
gccgataccgcgttgaagaccgctaactcgggttatctgacacgtcgtctcgttgacgtt
gcacaggatgcgattatttcggaagtcgattgtggcgccgaaatcggtctcaccatgcag
ccaatcgttgatgctggtcagatcgttgctccaatcggacagcgcgttctgggccgtacg
gcacttgatccgatcatcaatccggcaaccggcgaagtcatcgtcgaagctggccgcatg
atcgaggaaaaggacgttgaagtcatcgagaaggccggcatccagtcgatccgtattcgt
tcggctctgacctgtgaaacccgtaacggcgtttgcgccaagtgctatggtcgtgacctt
gcacgcggtacgcctgttaaccagggtgaagcagttggcgttatcgctgctcagtcgatc
ggtgagcctggcactcagctgaccatgcgtacgttccaccttggtggtactgcacaggtt
gttgactcgtcttacctggaagcttcgtacgaaggcactgtcaagctgcgtaaccgcaac
gtggttcgcaactccgatggcaatctcgtggtgatgggccgtaacatggctgtcctgatc
ctcgactcgaccggcaaggaacgtgcggttcaccgcgtaacctacggttcacgcctgttc
gttgacgaaggtgatgcagtcaagcgcggccagcgtattgctgaatgggatccgtacacc
cgtccaatcttgacggaagttgaaggttatatcgagttcgaagatctcgttgatggcctt
tcggtttcggaaacagcggacgagtcgaccggtatcacgaagcgcgtcatcattgactgg
cgttcgacaccacgcggtgcggacctcaagcctgctatggtcatcaaggacaagagcggc
aagatcgcgaagctgtcgaaaggtggcgaagctcgcttcctgctttcggtagaaacgatc
ctttcgttcgagcctggtgcacatgttaatgctggtgatgttattgcgcgtctgccgatg
gaaagcgcgaagactaaggatattaccggtggtctgccacgcgttgcggaactgtttgaa
gctcgtcgtccgaaggaccacgccgtcatcgcagagatcgatggtaccgttcgttttggt
cgcgattacaagaacaagcgtcgcatcatcattgagccaaacgacgatacgatcgagcct
gttgagtatctgatccctaagggcaagccgttccatcttcaggacggcgacgttatcgaa
aagggtgaatatatcctcgacggtaacccagcaccgcatgacattctggcgatcaagggc
gttgaagcactcgcttcgtacctcgtgaacgaaatccaggaagtctatcgtttgcagggc
gttctcatcaacgacaagcacatcgaagtgattgttcgtcagatgctgcagaagatcgag
atcacggaatccggtgataccggctacattccgggcgatcacgtcgaccgcatcgaactg
gacgaaatcaatgatcgtctgatcgaagaaggcaagaagccaggttcgggtaatccggtt
ctgcttggtattaccaaggcgtcgcttcagactccttcgttcatctcggcggcatcgttc
caggaaaccactcgcgtactcaccgaagctgcagttgcaggcaagatggatacgttgcag
ggtctcaaggaaaacgtcatcgtcggtcgtctcatcccggctggtacaggtggcatgacc
aaccagatccgtcgcattgcaactgctcgcgacgaactgatcatcgacgagcgccgcaag
tcgaccggttcttcggaagccaacgtgatgctggcagatatgaccaacaacgctgccgaa
taa
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