Okeanomitos corallinicola: WJM97_11900
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Entry
WJM97_11900 CDS
T10416
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ocf Okeanomitos corallinicola
Pathway
ocf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ocf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WJM97_11900 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocf03021
]
WJM97_11900 (rpoB)
03400 DNA repair and recombination proteins [BR:
ocf03400
]
WJM97_11900 (rpoB)
Enzymes [BR:
ocf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WJM97_11900 (rpoB)
Transcription machinery [BR:
ocf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WJM97_11900 (rpoB)
DNA repair and recombination proteins [BR:
ocf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WJM97_11900 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WZB86115
UniProt:
A0ABZ2UNR8
LinkDB
All DBs
Position
2757429..2760791
Genome browser
AA seq
1120 aa
AA seq
DB search
MTNETYMEPAFLLPDLIEIQRSSFRWFLEEGLIEELNSFSPITDYTGKLELHFLGQNYKL
KEPKYSVEESKRRDSTYAVQMYVPTRLLNKETGDIKEQEVFIGDLPLMTDRGTFIINGAE
RVIVNQIVRSPGVYYKSEIDKNGRRTYSASLIPNRGAWLKFETDRNDLVWVRIDKTRKLS
AQVLLKALGLSDNEIFDALRHPEYFQKTIEKEGQFSEEEALMELYRKLRPGEPPTVLGGQ
QLLESRFFDPKRYDLGKVGRYKLNKKLRLSVPDTMRVLTPGDILSAIDYLINLEYDIGSI
DDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIRERMTVSDAEVLTPASLVNPKPLVAAI
KEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIE
TPEGPNAGLIGSLATHARVNLYGFLETPFRPVENGRVRFDIPPVYMTADEEDDLRTATGD
VPLDENGYIKGPQVPVRYRQDWTTTSPEQVDYVAVSPVQIVSVATSMIPFLEHDDANRAL
MGSNMQRQAVPLLKPERPLVGTGLEAQGARDSGMVIVSRTDGDVVYVDASEIRVRVREGT
GDRLQVTGDSQETSSSSVSKPQEIRYVLSKYQRSNQDTCLNQKPLVRIGEKVVAGQVLAD
GSSTEGGELALGQNIVVTYMPWEGYNYEDAILISERLVQDDVYTSIHIEKYEIEARQTKL
GPEEITREIPNVGEDALRQLDEQGIIRIGAWVDAGDILVGKVTPKGESDQPPEEKLLRAI
FGEKARDVRDNSLRVPNGEKGRVVDVRLFTREQGDELPPGANMVVRVYVAQKRKIQVGDK
MAGRHGNKGIISRILPAEDMPYLPDGSPVDIVLNPLGVPSRMNVGQVFECLLGWAGYNLG
VRFKITPFDEMYGEESSRRIVHGKLQESRDETGKDWLYNPDNAGKITVYDGRTGEPFDHP
VTVGVAYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAFGAA
YTLQELLTVKSDDMQGRNEALNAIVKGKAIPRPGTPESFKVLMRELQSLGLDIAVHKVET
QADGSSLDVEVDLMADQGSRRTPPRPTYQSLSRESLEEEE
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgactaacgaaacatacatggaaccagcctttctgttgcccgacttgattgaaatccag
cgttcaagctttcgctggtttttagaagaaggattaatagaagagttgaactcatttagt
cccatcacagattacacagggaaactagaacttcactttttaggacaaaactataaactc
aaagaacctaaatatagcgtcgaagaatctaaacgacgtgatagcacttatgcagtacag
atgtatgtgcctacaagactgctaaataaagaaacaggggatattaaagaacaagaagta
ttcataggtgatctgcccttaatgacagataggggtacgtttattattaacggagccgag
agggtaatagttaaccagatcgtccggtcgccaggagtttattacaaatcagaaattgac
aaaaacggacgcaggacttattctgccagcttaatacccaaccggggggcatggctcaaa
tttgaaacggatcgtaacgatttagtgtgggtcagaatagataaaacccgcaaactatca
gcccaggtacttctcaaagcactaggattatctgataacgaaatctttgatgccctacgc
cacccagagtatttccaaaaaaccattgaaaaagaagggcaattttccgaagaagaagcc
ctgatggagttgtatcgcaaacttcgtcctggtgaaccgccaacagtactaggtggacag
caactactagaatcacgcttctttgatcccaagcgctatgacctgggtaaagtaggtaga
tacaaactcaacaaaaaactccgcctctccgtcccagacaccatgcgcgtcctgacccca
ggggacatcctctccgccatagattatctgatcaatctagaatatgatattggtagcatt
gacgacattgatcacctcggaaatcgccgagttagaagtgttggtgaactactgcaaaac
caagtgagagtaggcttaaacagattagagcggattattcgggaaagaatgacagtatca
gatgctgaagttctgacccccgcatccctagtcaaccccaaaccattagtggcagcaatc
aaagaattctttggttctagccaactaagtcagtttatggatcaaaccaatcccttagca
gaattgacccataaacgccgactcagtgccttgggccctggaggtttaaccagagaaaga
gcgggctttgctgtacgggatattcatcctagccactacggacgtatttgcccaattgaa
actccagagggaccaaacgccggactaattggttcactagctacccatgcccgcgttaac
ctctatggatttttagaaacaccctttagacccgtagaaaatggcagagtaagatttgat
atcccaccagtgtacatgacagcagacgaagaagacgatctgcgaactgccacaggtgac
gtacccttagacgaaaacggttacatcaaaggaccacaagtacccgtccgctatcggcaa
gattggacaaccacaagcccagaacaagtagactacgtagccgtttccccagtacagatc
gtatccgtagcaaccagcatgattcccttcctggaacatgatgatgcgaaccgtgcctta
atggggtcaaatatgcaacgtcaggcagtacctttattaaaaccagaacgtcccttagta
ggaacaggcttagaagcccaaggtgctagagactcagggatggtgattgtatcccggaca
gatggggatgtagtgtatgtagacgcatccgaaattcgtgtcagagttagggagggaaca
ggtgacaggttacaggtgacaggtgacagccaagaaacctcctcttcctcagtctccaaa
ccccaggaaattagatatgttttatctaaatatcaacgctctaaccaagatacctgctta
aaccaaaaaccactggtgagaattggggaaaaagttgttgctggacaagttctggctgat
ggttcttctacagaagggggagaactggcattaggacaaaacatcgttgttacctatatg
ccctgggaaggttacaactacgaagatgcaatcttgatttctgaacgtctggtccaagac
gatgtatacacctcaattcacattgaaaaatatgaaattgaagccagacaaaccaaactc
ggaccagaagaaatcaccagagaaattcccaacgtcggggaagatgccttacgtcaattg
gatgaacagggaataattcgaatcggagcatgggtagatgctggggatattctcgtggga
aaagtcacccccaaaggtgaatctgaccaacccccagaagaaaaactcctccgggcaatc
tttggtgaaaaagctcgtgatgtgcgggataattccctacgcgttcccaacggtgaaaaa
ggccgggttgtggatgtgcgactgttcaccagagaacagggtgatgaactgccaccgggt
gcaaacatggtagtacgggtttacgttgcccaaaaacggaaaatccaagtcggcgacaaa
atggcagggagacatggtaacaaagggattatttcccggattctcccagccgaagatatg
ccttatttgcccgatggttcaccagtagatatcgttctcaatcccttgggtgtaccgagc
cggatgaacgtaggtcaagtatttgaatgtttattaggttgggctggctataacttggga
gtgaggtttaaaattactccctttgacgaaatgtatggggaagagtcatcacggcggatt
gtccacggcaagttacaagagtcgcgggatgaaactgggaaagattggctctataaccct
gacaatgctggcaaaatcacggtttatgatgggcgtactggtgaaccctttgaccatcct
gtcaccgtaggtgtggcctatatgctcaaactggtgcatttagttgatgataaaattcac
gctcgttccactggaccctattctctggtgactcaacaacccctgggtggtaaagctcaa
caaggtggacaaagatttggagaaatggaagtatgggcgttggaggcctttggtgcggct
tataccttgcaggaattgttaactgttaagtccgatgatatgcaaggtagaaacgaagca
ctcaatgccattgttaagggtaaggctattccccgtcctggtactccagaatcctttaag
gtattgatgcgagagttgcagtccttgggtttagatattgctgtccataaggtagaaacc
caagctgatggtagttccttggatgtggaagttgacctgatggcagaccaaggttctcgt
cgtactccacctcgtcctacctatcagtcactttcccgtgagtccttggaagaggaagag
tag
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