Oceanispirochaeta crateris: EXM22_08540
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Entry
EXM22_08540 CDS
T06177
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ock
Oceanispirochaeta crateris
Pathway
ock03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ock00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXM22_08540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ock03019
]
EXM22_08540
03400 DNA repair and recombination proteins [BR:
ock03400
]
EXM22_08540
Enzymes [BR:
ock01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EXM22_08540
Messenger RNA biogenesis [BR:
ock03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EXM22_08540
DNA repair and recombination proteins [BR:
ock03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EXM22_08540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
SNF2-rel_dom
TniB
Helicase_C_2
NLRC4_HD2
Motif
Other DBs
NCBI-ProteinID:
QEN08030
UniProt:
A0A5C1QM25
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All DBs
Position
1864557..1866503
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AA seq
648 aa
AA seq
DB search
MGDTGTLEEQLQRFFGFTAFRGKQRRVIESALSGHSTLAVFPTGSGKSLCYQLPALLQEG
LTLVISPLIALMKDQVDFLEKHNIPAARYDTSLTREEWEEVNQQMRSNKLKILFVSPERL
GNEKFIALMTRIKIQTLVIDEIHSISEWGHNFRPDYLKLARYYKELKIPKMIGLTATANK
KVIKDICRVFSIEEEHCIVSGFHRPNLYIRIHPVSETNRNQKLLETLKIRESGPAIVYVS
QQKTSNEVQKYLEAHGISARAYHAGMGAEARKDVQNWFMPSEKAVIVATIAFGMGIDKAN
VRQVIHYNLPKSLENYMQEIGRAGRDGQAADCTLLYCPSDRIVLENYSYGDTPARENIHK
LLQMLSHLDHEFSISPYHCSRDFDIRDLVCRTLFTYLELDSFIESTGSFANEYSIRFIRP
EKERTLQIGPERAAFLESVFSTGKMGRLLLKLDLLQAAQTTGEDLSRIQRALIWLENEGW
IETKVKNMRHSYRKIKTDWNVDEMTETLVKRFTEREDTDIRRIDLIEQLCLSQHCRTAVL
LKYFGEELKNDSCGHCDFCDNTAEMTVENQENPGLSPSQKTELKSLLKTIENENLTISQT
TRFLCGLSTPGLSRKKMTKAKGFGNFQNSPYKVVQSEVNSIKRQSETS
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatacaggaacacttgaagaacaactacagcgctttttcggattcacagccttt
aggggaaaacaacggagggtaattgaatctgccttgtcgggccatagtaccctggctgtc
tttcctacaggaagcggcaagagcctctgctatcagctcccggcactcttgcaggaaggg
ctcacactggtcataagcccccttatagccctgatgaaagatcaggtggattttctagaa
aaacacaacataccagcagcccgatacgatacatctctcaccagagaggagtgggaagag
gtcaatcaacagatgagatccaataaactgaagattctctttgtttctcccgaacgcctg
ggaaatgaaaagtttattgccttgatgacccggatcaagattcaaaccctggtgattgat
gaaatccactccatttccgaatggggtcataacttccggccggattatctgaagctggcc
cgctattacaaggaactaaagattcccaagatgattggtttaaccgcaacagccaataaa
aaggtcataaaagatatttgccgggtcttctcaatcgaagaggaacattgcattgtcagc
ggatttcaccgccccaatctgtatatcaggattcaccctgtgtcagagacaaaccggaat
cagaagttgctagaaacccttaaaataagagagtccggtccagcgatcgtctatgtgagc
cagcaaaaaacaagcaatgaggttcagaaatacctggaagcccatggcatttccgccagg
gcctaccatgcagggatgggagctgaggcaagaaaggacgtccagaattggtttatgccc
agtgagaaggcagtgattgtagctactattgcctttggtatgggtattgataaggcaaat
gtccgtcaggtgatccattacaatctacccaagagccttgaaaactatatgcaggaaatc
ggtcgggccggcagagacggccaagcagcagactgcacactcctgtattgtccatcagac
aggatagtccttgaaaattacagttatggagacacacccgcgagggaaaacattcacaaa
ttactgcagatgctttcccatcttgatcatgaattttcaattagtccctatcactgctcc
agagactttgatatcagagatcttgtttgccggactcttttcacctatttagaattggac
tcatttatagagagtacaggtagttttgccaatgaatacagcatccggtttataagaccc
gaaaaagagagaactcttcaaattggtcccgaaagagccgcttttctggaatcagtcttt
tccacaggtaaaatgggacggcttttactgaaactagatcttctccaggccgcacaaact
accggagaagatctttccagaatacagagagccctcatctggctcgaaaatgagggctgg
attgagacgaaagttaaaaatatgcgtcacagttatagaaagataaaaactgactggaat
gtggatgagatgacggaaacacttgtaaagcgttttaccgagagagaagatacagatatc
cggagaatcgatctcatcgaacagctctgcttatcacaacattgcagaactgcagtcctg
ctaaaatactttggtgaagaactaaaaaatgacagctgcggccactgcgatttctgcgat
aacacggcagaaatgacggtagaaaatcaagagaatccgggactcagtccctcccaaaag
acagaactgaagtctctcctgaaaacaattgaaaatgaaaacctcaccatatcccagacg
acccggttcctttgcggactctctacgccgggattaagccggaaaaagatgacaaaagcg
aaaggattcggaaacttccaaaactccccttacaaggttgttcaatcagaagtaaattcg
ataaaacgccaaagtgaaacatcataa
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