Ochrobactrum sp. EEELCW01: GTN27_13255
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Entry
GTN27_13255 CDS
T07148
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ocl
Ochrobactrum sp. EEELCW01
Pathway
ocl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ocl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GTN27_13255 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocl03400
]
GTN27_13255 (ligD)
Enzymes [BR:
ocl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GTN27_13255 (ligD)
DNA repair and recombination proteins [BR:
ocl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GTN27_13255 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QTN04220
LinkDB
All DBs
Position
2:131766..134270
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AA seq
834 aa
AA seq
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MGQSLETYRRKRDFTLTNEPRGKSSRTKRELFVVQKHDARRLHYDFRLEMDGVLKSWAVT
RGPSLVPGEKRLAVHVEDHPLEYADFEGTIPKGEYGGGTVIVWDTGRWKSTADAHQQYKK
GHLEFELTGEKLKGRWHLIRMHGKPDEKRENWLLIKGEDEFSRNPDEPDILVEMPKSVKT
GRAIADVEHEAPGWSSKTGSINKKSNAQGDGGGANIKNAKKRPMPSFVKPELATLVSVAP
DGNRWLHEIKFDGYRIQAHIAGGKVALYSRGGLDWTEKFGQQIARDLVGTSVNEAILDGE
IVVESQSGLSDFSALQEDLREGRSDRFVYYLFDLLHVDGKDLRQTPLVERKTLLEKLISA
SSSTLRFSEAFDADGAAVLKNACGLGLEGIVSKLREASYRSGRSNDWRKSKCIGRQEFVI
AGYVPSTVTRAAIGSLLLGVQDKKGLVPVGRVGTGFSVRIAKELYKRLQAMRQGGSPFAV
PLTADERRGAKFVTPLLVAEIEFRAWTADKRLRHASFRGVRDDKAAKDVIWEKQIMSPRI
SSKGPEEIDVKLTHPDRVYWPGEGVTKQGLADYYSAIWSSIEPFIVNRPLALLRCPTGID
GEHFFQKHAWKGLNEHIIEVQDPENKEEEPYISIRDFNGLIGLVQAATLEIHPWGSTLKN
WELPDTLTMDLDPGEGVPWSRVIEAAIETKERLEKLGLKTFVKTSGGKGLHVVAPLKPKV
DWDALKSFTKAIADQMAADSPDRYVSTISKAKRKGKILIDYLRNQRGMTAVAPYSPRARP
GAAVSMPLGWEEVTSAIGPAHFTIVNTPNRLAALNSDPWQDFRSAETPLPKLKK
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atgggacagtcactcgaaacctatcgcaggaaacgcgattttaccctgactaacgagccg
cgcggtaagtcttcgcgcacaaaacgcgagctctttgtcgtgcaaaaacatgatgctcgc
agactgcattatgatttccgccttgagatggatggcgtgctgaaaagttgggccgtgacg
cgaggtccaagccttgttcctggcgaaaagcgactggccgtgcatgtggaggaccatccg
cttgaatatgcggacttcgaaggcacgatccctaaaggcgagtacggtggtggtacagtt
atcgtctgggatacaggacgttggaaatccactgctgatgcacatcagcaatacaagaaa
gggcatcttgagttcgagctcacaggggaaaaactcaaaggtcgctggcatttgatccgg
atgcacggaaagccagacgagaagcgagagaattggctcctcatcaagggggaggacgaa
ttttccagaaatcctgatgaacctgacattcttgtagagatgccgaaatcggtaaaaacc
ggccgcgccatcgccgatgtcgaacacgaagcgccaggatggtcatcgaaaactggttcg
atcaacaaaaagtcgaacgctcaaggggatggtgggggcgcaaatatcaaaaatgcgaag
aagcgaccgatgccgagtttcgtcaaacctgagctcgctacgctcgtatcagttgctcca
gatggaaaccgctggcttcacgagatcaagttcgacggttatcgcatccaggctcatatt
gcggggggcaaggtcgccctttattcgcgtgggggactggattggactgaaaaatttggc
cagcagattgccagagatcttgttggtacgagcgtgaacgaagccatacttgatggggag
atcgttgtcgaaagccagtcgggactgtctgacttttcagctttgcaagaggatctaagg
gagggacgttctgatcgattcgtttattacctcttcgatctactgcatgttgatggcaaa
gaccttcgccagacgcctctggttgagcgcaaaacgttgctcgaaaaattaatttctgca
tcatcgtcaacacttcgcttcagcgaggcctttgatgccgatggggctgcggtactgaag
aatgcctgcggacttggccttgagggcattgtgtcgaagctcagggaggcatcttataga
agcggtcgcagcaacgattggcgtaagtcgaaatgcattggacgacaggaattcgtcatt
gcaggctatgttccgtcgacggtaacgcgagcggcaatcggttcgctccttttgggtgta
caggataagaaggggctggttcccgtaggccgggtgggaacaggcttttcggtcaggatt
gcaaaagaactttacaaacggctgcaagccatgcggcagggagggagcccattcgccgtg
ccgctgacggcagatgaaaggcgcggagccaagttcgttacgccgctgctggtagcggaa
atcgaatttcgtgcctggactgccgataagcgattgcgtcacgcgtccttcaggggggta
cgagacgataaggctgccaaggacgtcatatgggagaagcaaatcatgtcaccccgtatt
tccagtaaaggccccgaggagatcgacgtgaagctgacacatcccgaccgggtttactgg
ccgggcgaaggtgtcacaaaacagggtctcgcagattattattccgctatctggtccagc
atcgaacctttcatcgtcaaccgccccctggcattgttacgctgcccaaccggaattgac
ggagaacacttctttcaaaagcacgcgtggaaggggttgaatgaacatattatcgaagtt
caagatccagagaacaaggaagaggagccttatatcagcattcgggacttcaacgggctg
atcggtctggtgcaagccgcgacgctggaaattcacccctggggttctacgctcaaaaat
tgggagctaccggatacgttgacaatggatctcgatccgggtgagggcgttccatggtcg
cgcgtgatcgaagccgcaatcgagaccaaggaacgtctggaaaaactcggattgaagacg
tttgttaaaacgtccggtggcaagggactacatgtggtcgcgccattgaagccgaaggtc
gactgggacgccctcaagagctttacaaaggctattgcagaccagatggctgcagacagt
cctgatcgctatgtttcgacgatttccaaggccaagcgcaaaggcaaaattcttattgat
tatctgcgcaatcagcgcggcatgactgctgtagcaccctattcgccgcgggcacgtcct
ggtgctgcagtttccatgccgcttgggtgggaggaagtgacgtcagcaataggccccgcc
cattttactattgtcaacacgccgaaccggctggccgcattgaatagcgatccctggcag
gattttcgcagcgcggaaacgccgctgcctaagctgaagaaatag
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