Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139365405
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Entry
139365405 CDS
T10872
Name
(RefSeq) PHD finger protein 1-like isoform X1
KO
K11467
PHD finger protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
139365405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139365405
03036 Chromosome and associated proteins [BR:
ocla03036
]
139365405
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
139365405
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
139365405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_2
PHD
Mtf2_C
PHD_ash2p_like
PHD_2
Chromo
ASH2L-like_WH
DUF4537
Motif
Other DBs
NCBI-GeneID:
139365405
NCBI-ProteinID:
XP_070958907
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Position
2:complement(26738798..26754136)
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AA seq
520 aa
AA seq
DB search
MGGVSEGDDVLARWSDGLLYLGNVKRVDGVKQCCLVRFEDNSEFWVLRKDIHSFSVGVEE
VCCICDAPPLKEPLINCLKCRHGYHPECHTPSIEPEADSNSWICRQCVFAVATKRGGAIK
RGRFARLMQIMKLRLPYQLSSLDWDPQHLTNQQQCYCYCAGPGEWNLKMLQCGSCGQWFH
EACTQCLTKPLLYGDRFYEFQCSVCANGPETIQRLPMSWVDLAHLVLYHLSLCCKRKYFD
FDHEIMSFANENWDSLLLGSLSDTPRQDRCHNLLNALNSNKDRFVSGKEIKKKKCLFGLQ
VRAPPPLTSDSSPLITDPPINITQRRRSDPLSLPCQRRAMGPESRKSKRRIMETQPCPPP
VPATPIDLVPCCHGYVGGTNLYNSRKEEELNLGSPPKRMFALYHPTYNGAPAISRTLHHY
SAEDPCRVPPPCLPFSLSSSHHHHHNNQQHHQHQPGQKLDPCPSLMLRDVPSYPGGVGVG
GDGSAARGWGGGDGVRILARRVTPDGKVQYLVEWGNVSVY
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggggggagtaagtgaaggggatgatgtgttagctcgatggagtgatggactactgtac
ctcggcaatgtgaaaagagtagatggagtcaagcaatgttgtctggtgagatttgaggac
aactctgaattctgggtcctaagaaaagacatccactctttctcagttggagtggaagaa
gtttgctgtatctgtgatgccccacctcttaaagaacctctcatcaattgtcttaaatgt
cgtcacggttatcatccggagtgccacactccgtccattgagccggaagctgacagcaat
tcttggatatgtcggcaatgtgtctttgcagtggcaaccaagagagggggagccatcaaa
cgaggacggtttgcccggctcatgcaaatcatgaaacttcggctgccctatcagctgtca
tctttagactgggacccacagcatctgaccaaccagcagcagtgttactgctactgtgcc
ggacctggagagtggaacctgaaaatgttgcagtgtggaagttgtggtcagtggtttcat
gaagcttgcacacagtgtctgaccaagccgttgttatatggagacaggttttatgagttc
cagtgctcagtctgtgcaaacggaccagagacaattcaacggctacccatgagctgggta
gatttggcccatttggtgctctaccacctctccttgtgctgcaagagaaaatactttgat
ttcgaccatgaaatcatgtcgtttgccaatgagaattgggactctttgcttctaggctcg
ctctctgacacaccaaggcaagatcgctgtcacaatctgctcaacgctttgaactccaac
aaagacaggtttgtctctggtaaagagatcaagaagaagaagtgtctttttgggctccag
gtccgagctccgcctcccctgacctctgattcgtcccccctcatcactgacccgcccatc
aacatcacccaaaggagaaggtcagacccattgtcactgccctgccagaggagagcgatg
gggccagagtcacgcaaatcaaagcggcgcatcatggagacacagccttgtccgcccccg
gtcccagccaccccaatagatctggtgccatgttgccatggctacgtaggtggaactaac
ctctacaactccaggaaggaggaggagctgaatttgggctctccacctaagaggatgttt
gccctgtatcaccccacctataacggagccccagccatctctagaaccctgcatcactat
agtgcggaagacccttgtcgagtgccgcccccctgcctccccttctccctgtcatcctcc
caccatcaccatcacaacaaccagcagcaccaccagcaccagcctggccagaagttggat
ccctgcccctccctcatgctgcgtgacgtcccttcctatccgggcggcgtgggggtcggg
ggggatgggtcagctgccaggggctgggggggcggggacggggtgaggattttggcgagg
cgagtaacgccagacggcaaggtccagtacctcgtggagtgggggaacgtgagtgtgtac
tga
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