KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139370018
Entry
139370018         CDS       T10872                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018  RNA degradation
ocla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    139370018
  09123 Folding, sorting and degradation
   03018 RNA degradation
    139370018
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ocla03019]
    139370018
   03041 Spliceosome [BR:ocla03041]
    139370018
Messenger RNA biogenesis [BR:ocla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     139370018
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     139370018
Spliceosome [BR:ocla03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    139370018
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 139370018
NCBI-ProteinID: XP_070965448
LinkDB
Position
1:15866297..15872358
AA seq 149 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGRGVFGGRGRGMP
GVGMPGVGRGQQQEKKPAGGKPQGVKNQH
NT seq 450 nt   +upstreamnt  +downstreamnt
atgctacctctatctttgctgaagactgcacagaaccaccctatgctggtggagttgaag
aatggagagacgtataacggacacttggtcagttgtgacaactggatgaatataaattta
cgagaagtcatctgcacctcaagggatggagataaattttggaggatgcctgagtgttac
atcagaggaagcaccataaagtacctgcgtatccctgatgagatcattgacatggtgaag
gaagaggtggtgtccaagggccgtgggcgaggaggcatgcagcagaacaaacagcagggc
aagggtcgagggggaggagcaggcagaggtgtttttggaggccgtggtcggggcatgcca
ggagtgggaatgccaggagtgggcagaggccagcagcaggagaagaagcctgctggtggc
aaacctcagggagtcaagaaccagcactga

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