Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139370398
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Entry
139370398 CDS
T10872
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139370398
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139370398
09142 Cell motility
04820 Cytoskeleton in muscle cells
139370398
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocla00535
]
139370398
Proteoglycans [BR:
ocla00535
]
Extracellular matrix (ECM) proteoglycans
Others
139370398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
139370398
NCBI-ProteinID:
XP_070965948
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Position
17:complement(17634675..17648341)
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AA seq
687 aa
AA seq
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MARARIYRESLLVILLQIVLICSAQRGPVGTRGPAGPPGIAGVPGVDGIDGDRGDDNFIE
GGPGPDGEDGKPGTPGTAGLPGADGATGPVGDLGPDGPPGPKGEPGEAGEVGEIGEGPDG
TDGAAGAQGLVGELGKIGTPGSQGRKGPVGLPGPAGPRGLPGVYKGEDLCPNACPSGLNG
YSGLPGMKGHKGVKGESGEPGKQGHKGEEGDQAGEGEMGAQGLPGQGGPRGITGIMGLKG
DRGPRGTFGDLGPQGIQGGSGDVGQRGVVGETGPNGGQGARGPQGIRGLPGGKGEPGLAG
PDGREGIPGLPASKGITGKVGSPGDTGLQGLPGLPGAYGPKGQSGEMGNSGDPGSVGLMG
SPGKSGERGEQGEVGPVGARGGPGERGVRGPDGPAGAPGPRGGKGDLGLLGLPGPAGLVG
QNGDRGAVGLTGAQGEQGEAGSEGTAGDRGDFGDEGEPGEKGSTGRPGETGNKGPEGGRG
IPGPEGKPGQPGPRGMQGDRGVPGLPGTQGPAGKKPSDTHITQVCMRVMQEQLAQLAASL
RRPEAGISGLPGPPGPPGPAGPSGENGYPGLDGARGLPGLKGPPGLLGRKGLKGDTGDRG
DRGPTARGVKGEPGTPGLPGDHGRAAYGTDGRNGERGPRGVPGIPGVPGPPGRPGLNGYC
ESSQCILPMVASPISAKDSGMKGPNEE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgccaggatatatcgggagtcattgcttgtgattttattgcaaatagtcctt
atttgctccgctcagaggggcccggtcggtaccagaggccccgcaggaccccctggtata
gcaggcgtgcctggagtcgacggcattgatggagacagaggggatgataacttcatagaa
ggcggccctggtcctgatggggaagatggcaaaccaggaactcccggaacagccggccta
ccaggggcagacggtgccactggacctgttggggatctcggcccagatgggcctcctgga
ccaaaaggtgaacccggagaggctggggaagtcggggagattggcgagggacctgatggg
actgatggagcagctggtgcacaagggttggtgggcgagcttggcaaaatcggtaccccg
ggatcacagggcaggaaggggccagttgggcttcccggacctgcagggcccaggggtctt
cctggcgtgtataagggggaagacctgtgtcccaatgcctgtccttctggtcttaacgga
tattctggcctcccaggcatgaagggccacaaaggggtaaaaggagagtctggtgagcct
ggaaagcaaggacacaagggagaagaaggagaccaggcaggagagggcgagatgggagct
caagggctaccaggccaaggggggcccaggggaataacaggcataatgggcctcaaaggt
gacaggggaccacgtggaacgtttggagaccttggtccccagggaattcagggtggctca
ggtgacgtgggccaaagaggagtagtgggcgagactggaccaaacggtggtcaaggggcc
cgagggccacaaggaataaggggccttccaggggggaaaggggagcctggtctagctggg
cccgatggacgtgaaggaattcccggattgccagcatctaagggtattactgggaaagtt
ggcagtccaggtgatactgggctccaaggacttcctggtttgccaggcgcttatggtcca
aaaggacaaagtggcgaaatgggtaactctggcgacccaggttctgtaggactaatgggg
tctcctgggaaatcaggggaacgtggcgagcagggagaagtaggacctgtcggagcaaga
ggtggaccaggtgaaagaggagtgcgtggaccagacggacctgcaggggcaccaggaccc
aggggaggtaaaggggatctcgggcttcttggtttgcctggccctgccggcctggttgga
cagaatggagacaggggtgcagtcggtttgaccggtgctcaaggagaacaaggagaagcg
ggttcagagggcacagcgggagacagaggggactttggtgacgaaggggagccaggagag
aaaggatcgacgggcagaccaggagagactggaaacaaagggccggagggcggccggggc
ataccaggcccagagggcaagccgggccaacctggaccacgtggcatgcagggggacaga
ggggtgccaggactgccagggacacaggggccagcggggaaaaaaccaagcgatacacac
atcacacaagtttgcatgagggtaatgcaagagcagctagcccagctagcagccagcctg
aggaggcctgaagcaggcatctctggactgccaggtccccctggcccccctggtcctgca
ggcccctccggagagaacggctacccaggactggacggggccagaggactgccaggtctc
aaaggacctccagggctactgggtcgcaaagggctcaaaggtgacacgggcgacagagga
gacagaggacccacagcaagaggggttaaaggagaacctggaacacccggtctaccaggt
gatcacggtagagccgcctatggcacagacggccgcaacggcgagagagggccacgcggc
gttcccggtattcccggcgttccagggcctcctggtcgtcctggcctcaacggctactgc
gagtcgtcacagtgcatccttcctatggtggcatcaccgatatcggcaaaagattccggc
atgaaagggccaaatgaggaataa
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