Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139371125
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Entry
139371125 CDS
T10872
Name
(RefSeq) AP-5 complex subunit beta-1
KO
K19022
AP-5 complex subunit beta-1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139371125
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AP-5 complex
139371125
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Gene cluster
GFIT
Motif
Pfam:
AP5B1_middle
AP5B1_barrel
AP5B1_C
AP5B1_N
DUF190
Motif
Other DBs
NCBI-GeneID:
139371125
NCBI-ProteinID:
XP_070967308
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Position
17:54077280..54081087
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AA seq
964 aa
AA seq
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MSANWPERISAFLRSPSQFLCSTTSDIFLAEVLHELRDDRASDHIKVLLLSPLLEHPTLL
CPSVFVGEETALELMSVFAQCSPKSLPLRCHLLLALTSVLLCSCCVSSHTSASQDFLDLL
LQMAQDTNDAQAGAALHPLRTTACDCLRELEACLPGLLSQRLELLSSLRQQENSRLHQAY
TGLHALALRNAVYLLTQQKEAGAGDLKAALGSNEGFVWGEGADSAHPNSESHSDLALFSP
LTLGTMGKVPSLQTGLDCKELRSLLSSLLEESYLLTSLSQAALLRRLVEVLAMVPAVSPT
IFRAQLLRLLGTCKVCLLHTTLLMKAAFTDSLFSAEDESFLLKRLVGLSQHPLLSTPEKL
FYIDCILHFPENRPISSGDESLPVLLTPRLAAALVPTVFNDSVSMLARLNLLSLVYLEEG
EEDKEGQGGRGLAYLYDHLTSLLRIVENQASREMVVTFFRASFLFLLHFCHVERYSEDLS
QRLCDLYLRRTRLAPHLINLADRTQDRLEESGWAVALLRALQRTITEAPLSQLTLQDLRW
HLRILARVAEEGEVLQRATLNFLLCVITSSSSALCVSGDWRLGNSVLGVCRRLLLHPSLD
SLLTPLADLLQHLTCHYGETDIQDHARLYYTLLTTLSQEKLAGVLAQRGTERGRQAKVRS
LSAIMGENEELTSGLTVHQTERPLLRLVKLDKHEPDECRPEHKPDSEPACETESSPGQGG
IEDYRAQFQSSSFASEITLQYHLTHTGVHDPHFDKLFSIRLHFDLTDGHYEEVSDISVPC
LFRTRKPPTVRLRLKPKQPYHTTLRASAIFTTEDGLSWHSPLADLHVAFPEVFLPLLTPL
GWAREKKQRVFEGIWGEICSGQSEGDLTNTATSLFCDQLEDSAVGELVEKYFQRYLVSDL
DKGRCNVLFFLPPQSHVLLKVITEEDAVQVHIATDNWKLLPYINSYLEDITKEIHSTQQV
NGDV
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgaactggcccgagaggatctccgcattcttgcgcagcccgtcccagttcttg
tgcagcacgacatcggacatcttcctcgcagaggtcctgcacgagctgcgagatgacagg
gccagtgaccacatcaaggtcctgctgttgtccccactacttgagcaccctactctgctg
tgcccctctgtctttgtgggcgaggagaccgccctggagctcatgtctgtgtttgcccag
tgctcccccaaatccctcccgctccgctgccaccttctcctggccctcacctccgtgctc
ctctgctcctgctgtgttagctcacacaccagcgcctcccaagacttcctggaccttctc
ttacagatggcccaggacaccaacgacgcacaggctggggctgcattacacccattgagg
acaacagcctgcgactgccttagggagctagaggcttgcctcccgggcctactatcccaa
cgcttggagctcctgagcagcctgaggcagcaggaaaactccaggcttcaccaggcctac
acggggctccatgccctggcactgaggaatgctgtgtatctgctcacccagcagaaagag
gctggggctggagacctgaaggctgcactggggagcaacgaggggtttgtgtggggggag
ggtgcagactccgcacacccgaactctgagtcacactcagacttggccctgttctcgccc
ctcactctgggcaccatgggaaaagttccttccctgcagacgggcctagactgtaaagag
ctgagatcgctactctcctccctcttagaggagtcctacctgctcacatccctatcccag
gctgccctgctgcgacggctggtggaggtgcttgccatggtgcccgcagtctccccaacg
atattcagggcacagttgctgcgtctattgggcacatgcaaggtgtgtcttcttcatacc
actctgctgatgaaggctgctttcacagacagcctgttcagcgcagaggatgaatccttc
cttctaaagcgtctcgtcggcctgtcccaacaccccctactgagcacgcctgagaagctc
ttctacattgactgcatcctgcacttcccagagaaccgacctatcagcagtggcgacgag
agcctgcccgtgctcttgacccctcggctggccgcagccctagtgcccactgtgttcaat
gatagtgtcagcatgctggctagactgaacctactctctctggtctacctggaggaagga
gaagaagataaggagggacagggggggagaggcctggcctacctgtacgatcacctaacc
tcccttctccgtatcgtggagaaccaggccagtagggagatggtggtgaccttcttcagg
gcttccttcctcttcctccttcacttctgccacgtggagcgctactctgaggacctgtct
cagaggctgtgtgacctgtacctcagacgcactcggctggcccctcacctcatcaacctg
gctgaccggacccaggaccggctggaggagtcaggctgggctgtggcactgcttagagcc
ctgcaaagaaccatcacagaggccccactgtcccagctcaccttgcaagacctccgctgg
cacctcaggatcctggcccgtgtggcagaggaaggggaagtcctccagagggccactctc
aactttctgctgtgcgtcatcacttcctcttcatccgcgctgtgtgtgagcggggactgg
cgtctggggaacagcgtgctgggggtgtgtcgacgcctgctcctgcaccccagcttagac
tcccttctcacaccgctggctgatctcctacagcaccttacctgccattatggtgaaaca
gacatccaggaccacgcccgcttgtactacaccctcctcaccactctttcccaggagaag
ctggctggggtgttagcacagaggggaacagaaagggggcggcaggccaaagtgcgctcg
ctgtctgccatcatgggcgagaacgaggaactgaccagcggtctgaccgtgcaccagaca
gagcgaccgctgctgaggctggtcaaactggacaaacatgaaccagatgaatgcagacca
gagcataaaccagacagtgaaccagcctgtgagactgagagttccccaggacagggtggg
atagaggactacagagcccagttccagagttccagcttcgcctctgaaatcaccctccaa
taccacctcacacacactggagttcacgacccccatttcgacaagctcttcagcatccgc
ttgcactttgatctcacagacggccactatgaggaagtgagtgacatcagcgtgccttgc
ctgttcaggaccaggaagccccctacagtgaggctgaggctgaagcccaagcagccgtac
cacaccaccctgagagctagcgccatcttcaccacggaggacggcctctcctggcactcc
ccgctggcagacctacatgtggccttccctgaggtgtttctgcccctcctcacaccccta
gggtgggccagggaaaagaagcagagggtgtttgaggggatctggggtgaaatatgctca
gggcagtctgagggggatttgaccaacactgcaactagcctgttctgtgatcagttggag
gattcggctgtgggtgagctggtggagaagtactttcagagatatctggtctcagacttg
gataaaggcaggtgtaatgtgctcttcttcctcccaccccagtctcacgtgctgctgaag
gttatcacagaggaggatgccgtccaggttcatattgctacagacaactggaagcttctg
ccttatattaactcttatctagaggacattaccaaagagattcacagcacacagcaagtc
aatggtgatgtctga
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