Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374335
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Entry
139374335 CDS
T10872
Name
(RefSeq) gamma-aminobutyric acid receptor subunit rho-1-like
KO
K05190
gamma-aminobutyric acid receptor subunit rho
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04080
Neuroactive ligand-receptor interaction
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139374335
04082 Neuroactive ligand signaling
139374335
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139374335
Ion channels [BR:
ocla04040
]
Ligand-gated channels
GABA-A
139374335
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
Ig_GpJ_C
AfaD
Motif
Other DBs
NCBI-GeneID:
139374335
NCBI-ProteinID:
XP_070971475
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Position
19:complement(53736478..53759896)
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AA seq
487 aa
AA seq
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MCTMQVDTVLVLFCVCLMGVSGRSAHQRGDKLETYKQSRSRRETSRMDDGGAHSKTASPI
LKRGPDMTKSPMTKSEQLLRIDDHDFTMRPAFGGPPIPVGVDVQVESLDTISEVDMDFTM
TLYLRHYWKDERLSFTSTNNQSMTFDSRLAKKIWVPDMFFVHSKRSFIHDTTTDNVMLRV
YPDGNVLYSLRVTVTAMCNMDLSRFPLDTQTCSLEIESYAYTDDDLMLYWKKGNESLNTD
ERISLSQFLIQKFHTTTKLAFYSSTGWYNRLYIHFTLRRHVFFFLLQTYFPATLMVMLSW
VSFWIDRRAVPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVI
EYAAVNYLSTVQERKERKLRERLPCTCGIGNPDDAMCDPQITGYTTMDVNSIGNYGTAGN
YGMPENGGRQERMFAQVVLGDPQLTGQVKRPGYVNIWIDTHAIDKYSRMVFPGSYVLFNI
IYWSIYS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaccatgcaggtggatactgtgttggtgctgttctgcgtctgcctcatgggggtt
tctgggagatcagctcatcaaagaggtgacaagctggagacctacaaacaaagcagatcc
aggagagaaacatcaagaatggatgatggaggagctcacagcaagaccgcaagcccaatc
ctaaaacgaggtccagatatgacaaaatctcccatgacaaaatctgagcagctcttaaga
atagatgaccatgactttaccatgagaccagcatttggaggaccccctattccagttggg
gtagatgttcaggttgaaagtctggacacaatctctgaagtggatatggacttcaccatg
accctgtacctgaggcactactggaaggacgagcgcctgtccttcaccagtaccaataac
cagagcatgacctttgacagcaggctggccaagaagatctgggttcctgacatgttcttc
gtccactccaagaggtccttcatccatgacaccaccacggacaacgtcatgctgagggtg
taccctgacggcaacgtgctttacagtctgagggtcacggtcacggccatgtgcaacatg
gacctgagtcgctttcctctagacacacagacctgctcgctggaaatagagagctatgca
tacacggacgatgacctcatgctgtactggaagaaaggcaacgagtcactgaacacagac
gagaggatatctttatcccagttccttatccagaagtttcacaccactacaaagctggcc
ttctatagcagtacaggctggtacaaccgtctgtacatccacttcaccctgcgacgtcac
gtcttcttcttcctgctccagacctacttcccagccaccctcatggtcatgctgtcttgg
gtctccttctggattgaccgccgggccgtccccgctagggtccctttgggtatcaccaca
gtgctcaccatgtccaccatcatcactggagtcaacgcctccatgcccagagtgtcctac
atcaaagcggtggacatttacctgtgggtcagtttcgtgtttgtcttcctctcggtcata
gagtatgccgcggtcaactacctctctaccgtgcaggaaaggaaagagaggaaactaaga
gagaggttgccgtgtacatgtggcatcggaaaccctgacgacgccatgtgcgacccccag
atcactggttacaccaccatggacgtcaacagtatagggaactatggcaccgcagggaac
tatgggatgccggagaacggaggcaggcaggagaggatgtttgcccaggtggttctgggg
gatccccagctcacgggccaggtaaagaggccaggctatgtgaacatttggatagacacc
catgccatagacaagtactcacggatggtcttccctggttcctacgtcctgttcaacatc
atctactggtccatctactcctaa
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