Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139374443
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Entry
139374443 CDS
T10872
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139374443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139374443
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139374443
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
139374443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
139374443
NCBI-ProteinID:
XP_070971586
LinkDB
All DBs
Position
2:79361520..79397667
Genome browser
AA seq
2408 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQDIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQFLIQECVSLISKPNFISTLCYTIDNPLHYQKSLKPSTHLFTQLSKVLKLS
KVQEVIFGLALLNSCNADLRGFAAQFVKQRLPDLLRSYVDADLGGNQEGGFQDIAIEVLH
LLLSHLLFGQKGASGVGQEQIDTFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRILPD
SGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMARTHS
GLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYELD
HPGFLIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFCFA
DYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHCPD
MLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSM
AEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKWLT
DKIREHGEPFIQACVTFLKRRCPSIIGGLALEKDQPKSTLLPPETMATMLGCLQSCAGSV
TQELSETILTMAANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPHQMDPLT
AMGSLNLGSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPPLSNPSTPFGGIGSLSSQLG
NPGPLGSGIGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQSKMASDLSQVWPEANQ
HFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEE
YRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAAL
DRFKNRLKDYPQYCQHLASIGHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALA
QAQALSQPPKAPQPGQPPSTLVTTATTTTTVAKTTTITRPTPGSFKKDVPPSINTTNIDT
LLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMK
RVSIEPNFHSLYSNFLDTLKNPEFVKMALNETYRNIKVLLTSDKAAANFSDRSLLKNLGH
WLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNP
WTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDQLKRLEEQLS
APKKEAKPPEEMLPVVSTGDFLPFAAAPSTPAATTTCSATGPPTPQFSYHDINVYALAGL
APHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFAL
DSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEE
AAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQA
ERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWATDDVA
QIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALARNSRDGIAALGLLQKAVEGL
LDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVE
LLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIE
TLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLR
EKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEI
SYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGI
VVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPT
KAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQ
ILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPN
LKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVGGATLGP
WKYLQHNDTSLDQVSNEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHM
DIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVL
LERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQ
VMEGTGAS
NT seq
7227 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacttggtggacaattta
actaagaaaaactacagagccagccagcaggatatacaacatatagtgaatcgtcacggc
cctgaggcagacaggcatttgttacgctgtcttttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagtttctgatccaggagtgtgtttcactgatt
tcaaagccaaattttatttcaacactctgctacacaatcgacaatcccttgcactaccag
aagagtttgaagccttccacccacttgtttactcagttgagtaaagttctcaagttaagc
aaggttcaggaagttatatttggccttgctttgctgaattcgtgcaacgcagaccttcgt
ggttttgccgcgcagttcgtcaaacaaaggctcccggacctcctccgctcgtacgtggac
gcggaccttggaggaaaccaggaaggtggcttccaagatattgccatagaggtcctgcac
ctgctcctctctcatcttctttttggacagaagggagccagcggggtcggacaagagcag
attgacacgttcctcaagacactgtgcagagatttcccgcaggagcgctgccctgtggtg
ctcgcaccacttctataccctgaaaaacgggacattctgatggacaggattctgccagac
tcgggagagttagccaagaccatgatggagagttctctcgcagagttcatgcaggaagtt
ggctatggcttttgtgcaagcctcgatgaatgccgcaacataatcctacagtatggggtg
cgagaggttactgccagccaggtggccagggtcctggggatgatggcccgcacccactct
ggcttgtctgatggaatccccctacagtccatctcggctccgggcagtggcatttggagt
gatggaaaggacaaaagtgatggctctcaggcgcacacctggaatgtagaagttctaatt
gatgtggtcaaagaagttaaccccaatctgaactttaaagaggtgacctatgagcttgac
caccctggattcctaatccgggacagcaagggactgcagatggtggtgtatgggatccag
aggggcctgggcatggaggtgttccctgtcgacctaatctaccggccctggaagcatgct
gaaggacagctgtcattcatccagcactccctcatgagcccagatgtgttctgctttgct
gactacccctgccacaccgtagcaattgacatactgaaggccccacctgaggacgataat
cgagagatagccacctggaagagcctggacctggtggaaagcctcctgcgcctctctgag
gtgggccagtacgagcaggtaaagcagctcttcagcttccccatcaagcactgtcccgac
atgctggtgctggcgctgctgcagataagcacctcctggcacaccctgcgccacgagctc
atctccaccctcatgccaatcttcctgggcaaccaccccaactctgctatcatcttacac
tacgcctggcatggacagggccagtccccctctatccgtcagctgatcatgcactctatg
gctgagtggtacatgagaggggagcagtacgaccaggcaaagctgtcccgcatcctggat
gtggcccaggacttgaagtctctatctatgctgcttaatggtactccatttgccttcgtt
attgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaatggctgact
gacaaaatccgagagcatggggagcccttcatccaggcgtgtgttacgttcctgaagaga
cgttgtccctctatcattggtggtctggccctagaaaaagaccaacccaaaagcaccctc
cttcccccagaaacaatggctaccatgctgggttgtttgcagtcctgtgcagggagtgtc
actcaagagctctccgagacgatcttgaccatggctgccaactgtagcaacgtcatgaac
aaagcccgccagccgccaccaggggtcatgccaaagggccgcgctcccagcaccagcagc
ctagatgcaatttcccctgtgcaagtgtcggtgtctcctcaccagatggatcccctgaca
gccatgggctccctcaacctgggcagctctgccacctctcacacacagagtatgcagggc
tttcccaccccgctgggctctgctttcagcaacccccagtccccagctaaggccttccct
ccactgtccaaccccagcacaccatttggggggattggaagtctctcttcacagctaggt
aacccaggtccgctgggatcaggcattggctctggtattggttctggccttggaatgcca
gcggtgagcagtgatccatttgggacgaggaagatgagcacaccaggcctgaatccgccc
acctttcagcagagtaagatggcctctgacctatctcaggtgtggccagaggctaaccag
cactttagtaaggagattgacgatgaggctaacagctacttccagcgcatctacaaccac
cccccacaccccaccatgtctgtggatgaggtactggagatgctgcagaggttcaaggac
tccaccatcaagcgagagcgtgaggtctttaactgtatgttgaggaacttgtttgaggag
taccgcttcttcccccagtaccctgacaaggagctacacatcaccgcctgcctgttcggg
gggatcattgagaaaggccttgtcacctacatggccctcggactggcccttcgatatgta
ctcgaagccttgaggaagccatttgggtccaaaatgtattactttgggatcgctgctcta
gatagattcaaaaatagactgaaggactatccccaatattgtcagcacttggcctcaatc
ggccactttctgcaattcccccatcatttacaagagtatatcgagtatggccaacagtca
cgggaccctccggtgaagatgcagggatccatcaccaccccaggaagcctggcgttggct
caagctcaggccttgtctcagcctcccaaagccccccagcctggacagccgcccagcacc
ctggtcaccacagctaccaccaccaccactgtcgccaaaaccactaccatcacccggcct
acccctggcagcttcaagaaggatgtgccgccctccatcaacactacaaacatcgacaca
cttctagtagcaacagaccaaaccgagaggattgtggaacccccagaaaatgttcaagag
aaaattgctttcatcttcaataacctgtcacaatccaacatgacacagaaggttgaggag
ttaaaggagactgtcaaagaggagttcatgccctgggtctctcagtatctggtcatgaag
agggtcagcattgagcccaacttccacagcctgtattccaacttcttggacaccctgaag
aacccagagtttgtcaaaatggccctgaatgaaacttacagaaacatcaaggttctcctt
acctctgataaggcagctgcaaacttctctgatcgatccctactgaagaatttgggtcac
tggcttggtatgatcactctggctaaaaacaagcccatcctgtacacagatttggaggtg
aaatccctgttgctggaagcgtatgtcaaggggcagcaggagctactctatgtggtcccg
tttgtggccaaagtcctggaatccagtttacgtagcgtgattttccgaccccagaatccc
tggacgatggccatcatgaatgttctggcagagctgcatacggagcatgatctcaagctg
aatttgaagtttgagattgaagtgctgtgtaagaacttatcattggacatcaatgacctg
aagcctggcacccttctgaaggacaaagaccagttgaagagactggaggaacagctctct
gcaccaaagaaagaggccaagccccctgaagaaatgctccctgttgttagcacaggagac
tttcttccatttgcagctgcgccatccactcctgccgcaaccaccacttgctcagctact
ggtccccctaccccacagtttagctatcatgacatcaatgtgtacgcccttgcagggcta
gcccctcacatcaatatcaacatcaacatccccttgctccaagcccaccctcagctgaag
cagtgtgtgagacagtccattgagcgggccgtgcaggagctcgtccaccctgtggtggac
cgttccatcaagatcgccatgactacctgcgagcagattgtcaggaaggactttgccctg
gactccgaggagtcgcgcatgcgtgtggctgcccatcacatgatgcgtaacctgaccgcc
ggcatggccatgatcacctgccgggagcccctgctcatgagtatcgctaccaacctgaag
aacagctttgccgcagccctcagggcccccaccccccagcagagagagatgatggaggag
gctgctgctagggttgcccaggacaactgtgagctggcctgctgcttcatccagaagact
gcagtggagaaggctggcccagagatggacaagagactagccacggagtttgagctgagg
aagcacgcccgtcaggagggtcgtcgctactgcgaccctgtggtgctgacctaccaggca
gagcgcatgccagagcagatcagactcaaggttggaggagtagaccccaaacagctggcg
gtgtacgaggagtttgccaggaatgttccaggcttcctacccagcaacgacctgtctcag
cccactggattccttgcccagcccatgaagcaacaggcatgggccacagacgatgtggct
cagatttatgacaagtgcatggctgacctggagcagcacctccatgccatccccccagcg
ctggccatgaacccccagactcaagccctgcgcagtctgctggaggcagtggccctggcc
aggaactcccgggatggcattgctgctctgggcctgctgcagaaggctgtggagggtctg
ctcgatgccaccagtggtgccgatgctgacctgctcctgcggtacagagagtgtcacctg
ctggtgctaaaagccctccaggacggccgggcatacggaccacaatggtgcaacaaacag
attaccaggtgcctgattgagtgccgtgatgagtacaagtacaatgtggaggctgtggag
ctgctgatcagaaaccacctggtcaacatgcagcagtacgacctgcacctggcacagtct
atggagaacggtctgcactacatggcagtggcatttgccatgcagctggtaaagctgctg
ctggtggatgagcgcagtgtgagccacatcacagaggccgacctgttccacaccatcgag
actctgatgagaaccagcgcacactccagggccaatgcacccgaggggcttcctcagctg
atggatgtggtccgctctaactacgaggccatgatcgaccgggcccatggaggacccaac
tttatgatgcactctggcatctcccaagcgtctgagtacgacgacccgccgggcctgagg
gagaaggcggagtacttgctgagggaatgggtcaacctgtaccactctgcagccgccggc
cgggacagcaccaaggccttttctgcttttgtgggccagatgcaccagcagggcattctg
aagaccgatgacctgatcacgcgtttcttccggctgtgcacagagatgtgtgtggagatc
agctaccgcgcccaggccgagcagcagcacaatcctgcggccagtgccgccatcatcaga
gccaagtgctaccacaacctggatgcctttgttcgcctcatcgctctgctggtcaagcac
tctggagaggccaccaacacagtcaccaagatcaacctgctcaacaaggttctaggtatt
gtggttggagtgctgatccaggaccatgatgtaagacagacggagtttcagcagttgcct
taccaccgcatcttcatcatgctgctgcttgagctcaatgcccccgagcatgtgctggag
accatcaacttccagaccctcactgccttctgcaacactttccacatcctgaggcctacc
aaagctcctggctttgtctacgcttggctggagttgatctctcaccggatcttcatcgcc
aggatgctggcacacacccctcagcagaagggttggcccatgtatgcccagctgctcatt
gatcttttcaaatacctagcgcccttcctgaggaatgttgagctcaacaaacctatgcaa
atcctctacaagggtaccctgcgtgtcctgcttgtcttgctgcatgacttcccagagttc
ctgtgtgactaccactacggcttctgtgatgtcatcccgcccaactgcatccagctccgc
aacctgatcctgagtgccttcccacgcaatatgagacttccagaccccttcactcccaat
ctgaaggttgacatgctcagcgagatcaacattgctccacgcatcctcactaactttacc
ggagtgatgccctctcagttcaagaaggatctggactcgtacctgaagacgcgctcccct
gtcaccttcctctctgagctccgcagcaatctgcaggtagggggcgccactctgggtccc
tggaagtatttgcagcacaacgacacatctttagaccaggtgtcaaatgagccaggcaat
cgttacaacatccagctgatcaatgcactggtgctgtatgtggggacccaggctatcgca
cacatccacaacaagggcagcactccctccatgagcaccatcactcactcagcccacatg
gacatcttccagaacctggctgtggacctggacactgaggggcgctatctcttcctgaat
gcgattgctaatcagttgcgctacccaaacagccacacccattacttcagctgcaccatg
ctctacctgtttgctgaggccaacacggaggcaatccaggagcagatcaccagggttctt
ctggagaggcttattgtgaacaggcctcacccctggggactgctcatcacgttcatcgag
ctcatcaagaaccctgccttcaagttctggagccacgactttgtgcactgtgccccagag
atcgaaaagttgttccagtcagtggctcagtgctgcatggggcaaaagcaggctcagcag
gtgatggagggcactggtgccagttag
DBGET
integrated database retrieval system
