Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139378261
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Entry
139378261 CDS
T10872
Name
(RefSeq) cyclic nucleotide-gated channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
139378261
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139378261
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
139378261
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GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
139378261
NCBI-ProteinID:
XP_070976662
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Position
2:complement(79521729..79565372)
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AA seq
1290 aa
AA seq
DB search
MFHWVGKVVPQPPDAPGSLGEETANPAPRNVSKDEVKKVKAQPAKQKEDDISEDNSIPSG
VMTWLSNGFTSALPQPAGTPNLSRSNSVSRSLQEDERNGVIKWIADGLSKVVPQPDEKYR
EDIREEEDETEVYNMKDVPDAEPLPHIPVVEMFSEYEEEDQIPQFPPNVVNWIKNAIPQP
VMLPAGYIEALSKAQRAQVLSPSPESLKGDEDSQNSNVVGWFVTGLGLKMPQPVARSRDD
VEVVPNGGVGALRAPFVTVQTQTVAYCMTACPKVSKRPKAVDLVLEEVVEADMKDLEVPT
QMTLPTEMALAQPAQQKQPLKPDEPEPNLPNVPVNNPIAGECPLSPQNSPKSSSSTLGHS
PKCPSVSPNCPNRSLNCPNRCPNCPTSSKFKYLSSYLVYPPTYSSSYPAYPKPWPIFPAR
YTTYLSEWDSPTPTCRTALSPRMPKQQQQNRDLELDRLVRQVPLQHHPPTRSPSPSSPNS
TLELPNVPSYPRLPPISLSRHLSGLFNPTFHIEDDPTSALPSVSSRLSVHPAVSVEDVDS
GGEGGGGGGEHHRHHIPQILTLQDPNFKTLTVPGVSKTSRQSKVAEKEKKLYSQSEEDEE
EMEIAVRAWPSQSSILSGDDGLKERPASSASQASYVVNERLQELVKMFKERTERAKEKLI
DPDHSDDDSPTASPARVPTPPPAPPEELKEEEIEEQQPKPRLCCKVMPPRWIRALLHYRF
PASIDPFTNLVYVLWLFFITLAWNWNMWLIPVRWAFPYQTPSNIYLWLLTDYLCDLIYIL
DILVFQPRLQFVRSGDIVFDKKDMRVNYMKTFRFKMDVISLVPLELFYFKTGINPLLRFP
RLLKIMSFFEFNDRLEGILTKAYVYRVIRTTTYLLYCLHCNACLYYWGSAYEGLGSTQWV
YDGQGNSYIRCYYFAVKTLITIGGLPDPTTLFEIIFQLINYFVGVFAFSIMIGQMRDVVG
AATAGQTYYRACMDNTVKYMASYRIPKDVQNRVKTWYNYTWQSQGMLDEQELLVQLPDKM
RLDIAVDVNYDIVSKVSLFQGCDRQMIFDMLKRLRSVVYLPGDYVCKKGEVGREMYIIKA
GEVQVVGGPDGKTVFVTLRAGSVFGEISLLAVGGGNRRTANVVAHGFANLFILDKKDLNE
ILVHYPESQKLLRKKARKMLTKDKKPQKEPARVIPPRTVTPKLFKAALDVAHQKTGLKGT
LSKIKEKINKSSVSLQPSMSSSLPPLSPVSPVSSLDPERKADATSPTLDSSTLLCPVSHC
HGDETLSKEQGHVEGEVAGESGKKKEKRKA
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
atgtttcactgggtggggaaggtggttcctcagccccctgacgcccctggttctctggga
gaggagacggccaatcccgcaccaagaaacgtgtctaaagatgaagtgaaaaaagtcaag
gcacaaccagccaaacagaaggaagatgatatttctgaggacaacagtattccgagtgga
gtgatgacctggctttccaatggattcacaagtgctcttcctcaaccagcaggcacacct
aacctcagcagatccaactctgtatccaggtcactgcaggaggatgaaaggaatggggtg
attaagtggattgcagatggactgagtaaagtggtaccccagccagatgaaaagtacaga
gaggatattcgagaggaggaggatgaaacagaggtttataacatgaaagatgtgccggac
gcagagcccctcccacatatacctgtggtggagatgttttcagaatatgaggaagaggat
cagataccacagttcccccccaatgtggttaactggattaagaatgctattcctcagcct
gtgatgctccctgcaggctacatagaggccctaagtaaggcccaacgggcccaggttctc
tcaccatctccggagtccctcaaaggagatgaggactcacagaactcgaatgtcgtgggc
tggttcgtgacgggcctcggcctcaagatgccacagcctgtcgcgagatccagagatgat
gttgaagttgtgccgaatgggggggtgggagcgctgagagccccttttgtaacagtccag
acacagacagtggcgtattgtatgactgcttgtcccaaagtctctaaaagacccaaagca
gtggacctggttctggaggaagtagtagaagcagacatgaaggatctggaggtgccaaca
cagatgacattaccaacagagatggctctggcacagccggcacagcaaaaacagccattg
aaaccagatgagcctgaaccgaatcttccaaatgtgccagtcaacaaccccattgctgga
gaatgccctctctccccacagaactctcccaagagttcttccagtactctcggccattca
cccaaatgtcccagcgtgtctcccaactgccccaacagatctctcaactgccccaacaga
tgtcccaactgccccaccagctccaagtttaaatacctcagcagttacctggtctaccca
ccaacctactccagcagttatccagcttaccccaaaccctggccaatcttcccagccaga
tatacaacttacctcagcgagtgggatagtcctacaccaacgtgcagaacagccttaagc
cccaggatgcctaagcagcagcagcaaaaccgggacctggagttggaccgcctggtccgc
caggtccctctccaacaccaccctccgactcgcagcccctcaccgtcctcccccaacagt
accctagagctgcccaacgtgccctcctacccccgcctgccacccattagcctgtccagg
cacctgtcagggcttttcaaccccaccttccacatcgaggacgaccccacgtccgctcta
ccctcagtgagctccaggctcagtgtgcacccagctgtcagtgtggaggatgtggattcc
ggcggagagggaggagggggcggaggggagcaccaccgccaccacattccccaaatcctt
accctacaggaccccaacttcaagaccctgaccgtacccggagtgtccaaaaccagccgt
cagagtaaagttgctgaaaaagaaaagaagttgtactctcagagtgaggaggatgaagag
gagatggagatcgcagtgagggcatggcctagccagtccagcatcctcagtggagacgat
gggctaaaggagcgccctgcgtcttccgctagccaggccagctacgtggtgaatgagcgc
ctacaggagctggtcaagatgtttaaggagaggacagaaagggccaaagagaaactcata
gacccagatcactctgatgatgacagtccaactgcctcccctgcgagagttccaacacca
cctcctgcgcctccagaggagctgaaggaggaggagatagaggagcagcaacccaagcct
agattatgctgcaaggtgatgcctcctcgctggatcagagctctgctgcactaccgcttc
cccgctagcatcgaccccttcaccaatctggtctatgtgctgtggctgtttttcatcacc
ttggcgtggaactggaacatgtggcttatcccggtgcgctgggccttcccctaccagacc
cccagtaacatctacctgtggctactcactgactatctgtgtgacctcatctacatcctg
gacatcctggtcttccagccccgcctgcagtttgtccgcagtggagacatagtgtttgac
aaaaaggacatgagagtgaattacatgaaaaccttccggttcaagatggatgtcatcagt
cttgttccactggagttgttctattttaaaactgggatcaacccactcctccgcttccca
cgactactaaagataatgtctttctttgagttcaacgaccgtcttgagggcatccttacc
aaagcctacgtttacagagtgatccggaccaccacctacctgctgtactgcctgcactgt
aatgcctgtctgtactactggggctctgcgtatgaaggtctgggctccacgcagtgggtc
tatgacggacagggcaacagttacatccgctgctactactttgctgtgaagaccctgatc
accattggtggactgccggaccccacaacgctctttgaaatcatctttcagctcataaac
tactttgttggagtgtttgccttttccatcatgattggacagatgagagatgtggttggt
gcagccacagcaggacagacgtactacagagcatgcatggacaacactgtcaaatacatg
gcctcctaccgtatccctaaagacgtgcagaaccgggttaaaacctggtacaactacacc
tggcagtcccagggcatgctggatgaacaggagcttctggttcagctcccagacaagatg
aggctggacatcgctgtggatgtcaactatgacattgtcagtaaagtgtctctcttccag
ggttgcgatagacagatgatctttgacatgctgaagagactgaggtctgttgtttacctc
ccaggggactatgtctgcaaaaagggtgaagttgggcgggaaatgtacatcatcaaagct
ggagaggtgcaggtggtgggcgggccagatgggaagactgtgtttgtcacactgagggcg
ggatcagtgtttggggaaatcagcttgctagcagttggtggagggaacaggagaacagca
aacgtggtggctcatggcttcgccaacctgttcatcctggacaagaaggacctcaatgag
attctagtgcattaccccgagtcccagaagctgctccgcaagaaggccaggaagatgctc
acgaaagataagaagcctcagaaggagccggcccgggtgatccctcctcgaacagtcacg
cccaagctattcaaagctgctctggatgtggcgcatcagaaaacaggcctcaaagggacc
ctctccaagattaaggagaagatcaacaaatccagcgtttctctacagccctccatgtcc
tcctccctgcctcccttgtccccagtctctccagtctccagtttggacccagagcgcaag
gctgacgccacgtcaccaaccttagacagctccacgctgctctgccccgtctcccattgt
cacggagatgagacactctccaaggagcagggccatgtggagggagaagttgcaggagag
agtgggaagaagaaagaaaagagaaaggcatga
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