Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139379027
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Entry
139379027 CDS
T10872
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03020
RNA polymerase
ocla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
139379027
09124 Replication and repair
03420 Nucleotide excision repair
139379027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139379027
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139379027
Enzymes [BR:
ocla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
139379027
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
139379027
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
139379027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
139379027
NCBI-ProteinID:
XP_070977850
LinkDB
All DBs
Position
21:complement(40783206..40805331)
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCYSCSKLLVDTN
NPKIKDILQKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVDQQEHDSEDITKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVYEIFKRISDEEDVILGLDPK
FSRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWST
FRMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGDVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
AIRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHICFLEMG
HDVTRLFYSNIQTVVNNWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAV
EFQNMATLKPSNKAFEKKFRFDCTNERALRRTLQEDVVKDVMTNAQVQSALEREYEKMKE
DREILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLV
IVNGEDHLSRQAQQNATLLFNIHLRSTLSSRRMTDEFRLSTEAYDWLLGEIESKFNQSIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTV
FLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPD
FDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKFHEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEEGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LNHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLME
ASSHGESDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGM
FFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGY
SPAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPS
YSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPSSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTS
PSYSPSSPRFTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYS
PTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSP
KYSPTSPTYSPTSPKGSTYSPLSPGYSNPSPSFTLTSPAISPDDSDEENN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtcggtcacagaagggggaatcaag
taccccgagaccacagaaggaggacgtcctaaacttggtgggctgatggaccccagacaa
ggggtcatcgaacgatccggaaggtgccaaacgtgtgcaggcaacatgacagaatgcccg
ggccacttcggccacatagagctggcaaagcctgtcttccacgtgggtttcgtcaacaag
atcatgaaggtcctccgatgtgtctgctactcgtgctccaagcttctggtcgacacgaat
aacccaaagatcaaagacatcctgcagaagtctaaggggcagcccaggaagcgtctgacc
cacgtgtacgacctgtgtaaaggcaagaacatctgcgagggcggagaggagatggacaac
aagtttggagtggaccagcaggagcacgacagtgaggacatcactaaggagaaggggcac
ggtggctgtgggcgctaccagccgcgtatccgccggtcgggcctggagttgtatgccgag
tggaagcacgtgaacgaggactcgcaggagaagaagatcctgctgagcccagagcgcgtc
tacgagatcttcaagcgtatctcggacgaggaggatgtcatcctgggcttggaccccaag
ttctcccggcccgagtggatgatcgtcacagtactccccgtgccaccactggctgtccgg
cccgccgtcgtcatgcagggctctgctcgtaaccaggacgacttgacacacaagctggcc
gacatcgtcaagatcaacaaccagctgcggcggaacgagcagagcggcgcggcggcccac
gtcatcgccgaggacgtgaagctgctgcagttccacgtggccaccatggtggacaatgaa
ctgccaggcctgcccagggcgatgcaaaaatcgggccgcccacttaaatccctcaaacag
cgtctgaaggggaaggaggggcgagtccgaggtaacttgatggggaaacgtgtggacttc
tccgcccgaaccgtcatcacccccgaccccaacctccagatcgaccaagtgggtgtcccg
cgctccatcgcagccaacatgaccttcccagaaatcgtcacaccctttaacattgacagg
ttacaggagttggtgcgcagaggcaacagccagtaccccggagccaaatatatcatccgc
gacaacggggacagaatcgacctgcggtttcaccccaaaccaagtgaccttcacctgcag
attggctacaaggtggaaagacatatgtgcgacggtgacatcattatcttcaacagacag
cccacgctacataaaatgtctatgatggggcacagagtccgaatcttgccctggtccacc
tttcgaatgaacctcagtgtaaccaccccgtacaatgctgactttgacggggacgagatg
aacctgcatctaccccagtccctggagacgagagctgagatccaggagcttgctatggtg
cctcggatgatcgtcaccccccagtccaacaggcccgtcatgggcatcgtgcaggacacc
ctcaccgcggtgcgcaagttcaccaagagggatgtcttcctagagcggggcgatgtgatg
aacctcctgatgttcctgtccacgtgggatggcaaggtgccccagccagccatcctgaag
ccccggccactctggacgggcaagcagatcttcagcctcatcatcccaggccacatcaac
gccatccgaacacacagcacccatccagacgaggaggacagtgggccatacaaacacatc
tcccctggggacaccaaggtgattgtggagaatggagagctgatcatgggcatcctgtgt
aagaagtccctgggtacctctgctggctccctggtccatatctgtttcctggagatgggc
cacgacgtcacccgcctcttctactccaacatccagacggtggtcaataactggctgctc
attgagggtgcctctattggtattggtgattctattgctgacgcaaagacttaccttgac
attcagaacaccatcaagaaggccaagcaggatgtaatagaggtcattgagaaggcccac
aacaatgagttggagcccacccccggcaacacgctgaggcagacctttgagaaccaggtg
aatcgcatcctgaatgacgcccgtgacaaaacgggttcctccgcccagaagtccctgtct
gagtacaacaacttcaagtccatggtggtggctggctccaaaggctccaagattaacatc
tctcaggttattgctgtggtggggcagcagaacgtggagggtaaacgtatccccttcggc
ttcaagcaccgcacgctcccccacttcatcaaggatgactacggccctgagagcagaggc
ttcgtggagaactcgtacctggctggcctcacgcccacagagttctttttccacgccatg
ggaggcagagaggggcttattgacacggccgtgaagaccgccgaaactggttacatccag
cgtcgtctgatcaagtccatggagtctgtgatggtgaagtacgacgccaccgtgaggaac
tccatcaaccaggtggtgcagctgcgctacggagaggacggcctggccggggaggctgtg
gagttccagaacatggccacgctcaaaccctccaacaaggccttcgagaagaagttcagg
tttgactgcaccaatgagcgggcgctgcggcgcaccctgcaggaggacgttgtgaaggat
gtgatgaccaatgcccaggtgcagagtgccctggagagagagtatgagaagatgaaggag
gacagagagattctgagggccatcttccccactggggacagcaaggtggtgcttccatgc
aacctggccaggatgatctggaacgcccagaagatcttcaggatcaacccccgcaccccc
acagacctcaacccccttcgagtggtagagggtgtccaggagctgagtaagaagctggtg
attgtgaacggcgaggaccacctgagcagacaggcccagcagaacgccacgctgcttttc
aacatccacctgcgctccacgctcagctctcgacgcatgacagacgagttccgactgagc
actgaggcttacgactggctactgggggagatcgagagcaagttcaaccagtctattgcc
cacccgggtgagatggtgggggcgttagcagcccagtcgctgggagaacccgccacccag
atgaccctgaacaccttccactacgccggtgtgtcggccaagaacgtcactctgggcgtg
ccgcgtctcaaggagttgatcaacatctccaagcggcccaagaccccctccctaaccgtg
ttcctgctgggtcaggcggcccgcgacgccgagagggccaaggatatcctctgtcggctg
gaacacaccaccctcagaaaggtgacggccaacacagccatctactacgaccctaacccc
cagagcacggtggtgacggaggaccaggagtgggtcaacgtctactatgagatgcccgac
tttgacgtgactcgcatctctccctggctcctccgcatcgagctcgaccgcaaacacatg
actgaccgcaagctgaccatggagcagatcgcagagaagatcaatgcaggtttcggagat
gatctgaactgtatcttcaatgacgacaacgccgagaagctggtcttgcgaattcgcatc
atgaacagcgacgagaacaagttccatgaggatgaggaagtggtggacaagatggacgac
gacgtgttcctgaggtgcatcgagtccaacatgctgacggatatgacactgcagggcatc
gagcagatcagcaaggtgtacatgcacttgccccagactgacaacaagaagaagatcatc
attacagaggagggagagttcaaggccctgcaggagtggatcctggagacagatggcgtg
ggactgatgagggtcctcagtgagaaggacgtggaccctgtcaggaccacctccaacgat
attgtagagatcttcacggtactgggtattgaggctgtacgtaaggcgctggagagggag
ttgaaccacgtcatctcctttgacggttcctacgtcaactaccgccacttgtcgttgctt
tgcgacaccatgacgtgccgcggtcacctgatggctatcacacgtcatggcatcaacaga
caggacacgggaccgctcatgaagtgctcctttgaggagacggtggatgtgctgatggag
gcgtcatcccacggggagagtgaccctatgaagggtgtgtctgaaaacatcatgctgggc
cagctggccccctgcgggacgggctgcttcgacctgctgctggacgctgagaagtgcaaa
tacggcatggagatccccaccaacatccccgggatcagtgtggctggacccaccggaatg
ttctttggctcggcgcctagccccatgagtggcatgtcccctgccatgaccccctggaac
actggagccacccccgcctatggtgcctggtcccccagcattggtagcgggatgactccc
ggagcagcaggcttctctcccagcgcagcgtccgacgccagtggcttctctccgggctac
tccccggcctggtcccctacccctggatctcctgggtccccggggccagccagcccctac
atcccctctccaggaggtgcgatgtctcccaactactcgcccacctccccggcctacgag
ccccgctctcctgggggatacaccccccaaagcccgggctactccccaacctccccctcg
tactccccaacctccccctcgtactcccccaccagccccaactacagccccacctccccc
tcgtactccccaacctccccctcctactccccaacctccccctcatactccccaacctcc
cctagttactcccccacgtccccctcctactccccaacctccccctcgtactctccaacc
tccccctcgtactcccccacgtccccctcttacagccctacatccccaagctacagccct
acgtccccaagctactcccccacctcgcctagctattcccccacctcaccctcctactcc
cccacctcaccctcctactcccctacctcaccctcgtactcccccacctcaccctcctac
tcccccacctcaccctcttactcccccacctctccaagctacagcccctcttcacccaac
tacacccccacctccccctcctactcccccacctccccctcttactcacccacctcccca
aactacacccccaccagccccaactactccccgacctccccctcttattcccccacctcc
ccgtcctactctccctccagcccgcgcttcaccccccagtcccccacctacacccccagt
tctccctcttacagccccagctcgccctcctactcacccacctcgcccaaatacacccct
acgtccccctcatactcccccagctctccagagtacacccccacctcccccaaatactcc
cccacctcgcccaagtactctccgacctctcccaaatactcacccacctccccaacttac
tcaccgacgacgcccaagtacagccccacttcgcccacctactcgcccacctcgcccacc
tacacccccaccagccccaagtactcccctacctccccaacatactctccaacctcaccc
aaatactctcccacctcccccacctactcaccaactagccccaaagggtccacctacagc
cccctgtctccgggctacagcaacccctcgcccagcttcaccctcaccagcccggccatc
agcccagatgacagtgacgaggagaacaactga
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integrated database retrieval system
