KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139381886
Entry
139381886         CDS       T10872                                 
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
  KO
K14548  U3 small nucleolar RNA-associated protein 4
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    139381886
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ocla03009]
    139381886
Ribosome biogenesis [BR:ocla03009]
 Eukaryotic type
  90S particles
   U3 small nucleolar RNA-associated proteins
    139381886
SSDB
Motif
Pfam: WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 WD40 WD40_Prp19 ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_NUP159_NUP214 EIF3I Beta-prop_HPS5 Beta-prop_TEP1_2nd Beta-prop_SCAP Beta-prop_Vps41 RMC1_N Beta-prop_WDR75_1st DUF7165 Beta-prop_IFT140_1st PROPPIN Beta-prop_DCAF12 Lactonase CPSF_A Kelch_KLHDC2_KLHL20_DRC7
Other DBs
NCBI-GeneID: 139381886
NCBI-ProteinID: XP_070981837
LinkDB
Position
2:60117761..60125427
AA seq 686 aa
MGEFKVHRVRFFDYMPTAIRAMAFNAHTKRLALARMDGSVEIFNFTDHYFQEKVIPGKDS
RSTESLCWVGGRLFSAGLNGEITEYDLENLRPKYSLEAYGGPIWTIISNTQGTQLAIGCE
DGTVKLFEVLEEHIQFERNLDRQKGRIISLSWHPSGTHIAAGMMDMIRVFDVPTGHAVQR
LLVDRGFGGSKSQETVVWSVAFLSDHTVVSGDSAGKVQVWDGHTGTLVKTHLVTKWDVLA
LSVSKDESSVVAGTSEGTVIQFQFIAPTLHQQQDKEWVRTRTFKNHTHDVRALAEIETAI
VSGGMDTHLVVRPLLEKFDEKSHASGLRKIHFPHRNLVSCAKKAGLLLFQFPGQLELWRL
GDSDGHGKPGDRLPLKRKPEKLLLLKRKGEDHICCSALSSCGGWLAYSTVSCVRIYRLQT
DNNNISITKVSKLPKALRSAHQLCFSSDSSKMFAASSQSSVLVIALTQSECKYVHTLKPK
SGSRQPIHLMTTSVDGKWLAAANSDCEIHVYNLQKLKLHCIVPVYGSCPSAMGIHPTTNN
MTVVHADQQLFEYSIVEKQYTDWSRKLQKQGLHNVWLDRDTPVTHVTFNPKNPNQVVLHD
MHMFCIIDQSLPLPDQKTQFYNQMTLRSLSEQERPSHLHAFKICKTFQDLLCVSLLDDQS
LVVVERPLLAITSQLPAPVRQKKFAT
NT seq 2061 nt   +upstreamnt  +downstreamnt
atgggggagttcaaagtgcaccgggttcggtttttcgactacatgcccacagcgatcaga
gccatggcattcaatgcccacacaaagagactagcccttgcacgaatggatgggagtgtc
gagattttcaacttcactgaccactatttccaggaaaaagttatcccagggaaagactcc
cgatccactgagtctctgtgttgggttggaggacgccttttcagtgctggcctgaatgga
gagatcacagaatatgacctggaaaacctaagacccaagtactccctggaggcatatggg
ggccccatttggaccataatcagcaatactcaagggacacaattagcgattggatgtgaa
gatgggacagtgaagttgtttgaagtacttgaagagcacatacagtttgagcgcaatctg
gacagacagaaaggtcgcatcatatccctctcctggcacccctctggcacacacatcgct
gctggcatgatggacatgatccgtgtctttgatgttccaactggtcatgctgtacagagg
ctcctggtggaccggggctttggaggctctaagagtcaggagacagtagtctggagcgtg
gccttcctgtcagaccatactgttgtaagcggggactctgctgggaaggtccaagtctgg
gacggacacaccggcactcttgtcaaaacacacctggtgaccaagtgggatgtgctggca
ctgtctgtctctaaggacgagagcagtgtggtggcagggacgtcagaaggcactgtgatc
cagttccagttcattgctcctactctgcatcagcagcaggacaaggagtgggtcagaacc
aggaccttcaagaaccacacgcatgatgtcagagccctggctgagatcgagactgccatc
gtctctggaggcatggatacccaccttgtagtgagacccctcttggagaagtttgatgag
aagtcacacgcttcaggacttcggaagatccactttccccatcgaaatctagtatcctgt
gcgaagaaggcaggactactgctcttccagttccctggtcagctggagctgtggagactg
ggagatagtgatggacatgggaagccaggagaccgcttgcctctgaagaggaagccggag
aaactcctccttctgaagagaaagggtgaagatcatatctgctgcagtgccctgtcctcc
tgtggaggatggctagcttattccaccgtgtcctgtgtgcgtatctacaggctgcagaca
gacaataataacatcagtattaccaaggtatccaaactcccaaaggctttacgctctgca
caccagctctgcttctcctcggactcctccaagatgtttgctgcctccagccaatcatca
gtcctcgttattgctcttacccagtctgagtgcaagtatgtgcacaccctcaagcccaag
tcagggtccaggcagcccattcacctaatgactaccagtgtagatgggaagtggctggcg
gccgcaaatagtgactgtgagatccacgtctacaatctacagaaactaaagctccattgt
atagtacctgtttatggttcctgtcccagtgccatggggatccaccccaccaccaacaac
atgacagtggtgcacgctgaccaacagttatttgagtactctatagtggagaagcagtac
acagactggagccgaaagctgcagaagcaggggctccacaacgtctggttggaccgggac
acacctgtcacccatgtgaccttcaacccgaaaaacccaaatcaagttgtcctgcacgac
atgcacatgttctgcataatcgaccaaagtctgcccctccctgaccagaagacccagttt
tacaatcagatgaccctcaggagcctatcagagcaggagaggcccagtcacctccatgct
ttcaaaatatgcaaaaccttccaggacctgctgtgtgtgagcctgttggatgaccagtct
ctggtggtggtggagcgccctctcctggccatcacatctcagctgcctgctccagtccga
cagaaaaagtttgcaacataa

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