Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139381886
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Entry
139381886 CDS
T10872
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
139381886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ocla03009
]
139381886
Ribosome biogenesis [BR:
ocla03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
139381886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40
WD40_Prp19
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_NUP159_NUP214
EIF3I
Beta-prop_HPS5
Beta-prop_TEP1_2nd
Beta-prop_SCAP
Beta-prop_Vps41
RMC1_N
Beta-prop_WDR75_1st
DUF7165
Beta-prop_IFT140_1st
PROPPIN
Beta-prop_DCAF12
Lactonase
CPSF_A
Kelch_KLHDC2_KLHL20_DRC7
Motif
Other DBs
NCBI-GeneID:
139381886
NCBI-ProteinID:
XP_070981837
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Position
2:60117761..60125427
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AA seq
686 aa
AA seq
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MGEFKVHRVRFFDYMPTAIRAMAFNAHTKRLALARMDGSVEIFNFTDHYFQEKVIPGKDS
RSTESLCWVGGRLFSAGLNGEITEYDLENLRPKYSLEAYGGPIWTIISNTQGTQLAIGCE
DGTVKLFEVLEEHIQFERNLDRQKGRIISLSWHPSGTHIAAGMMDMIRVFDVPTGHAVQR
LLVDRGFGGSKSQETVVWSVAFLSDHTVVSGDSAGKVQVWDGHTGTLVKTHLVTKWDVLA
LSVSKDESSVVAGTSEGTVIQFQFIAPTLHQQQDKEWVRTRTFKNHTHDVRALAEIETAI
VSGGMDTHLVVRPLLEKFDEKSHASGLRKIHFPHRNLVSCAKKAGLLLFQFPGQLELWRL
GDSDGHGKPGDRLPLKRKPEKLLLLKRKGEDHICCSALSSCGGWLAYSTVSCVRIYRLQT
DNNNISITKVSKLPKALRSAHQLCFSSDSSKMFAASSQSSVLVIALTQSECKYVHTLKPK
SGSRQPIHLMTTSVDGKWLAAANSDCEIHVYNLQKLKLHCIVPVYGSCPSAMGIHPTTNN
MTVVHADQQLFEYSIVEKQYTDWSRKLQKQGLHNVWLDRDTPVTHVTFNPKNPNQVVLHD
MHMFCIIDQSLPLPDQKTQFYNQMTLRSLSEQERPSHLHAFKICKTFQDLLCVSLLDDQS
LVVVERPLLAITSQLPAPVRQKKFAT
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgggggagttcaaagtgcaccgggttcggtttttcgactacatgcccacagcgatcaga
gccatggcattcaatgcccacacaaagagactagcccttgcacgaatggatgggagtgtc
gagattttcaacttcactgaccactatttccaggaaaaagttatcccagggaaagactcc
cgatccactgagtctctgtgttgggttggaggacgccttttcagtgctggcctgaatgga
gagatcacagaatatgacctggaaaacctaagacccaagtactccctggaggcatatggg
ggccccatttggaccataatcagcaatactcaagggacacaattagcgattggatgtgaa
gatgggacagtgaagttgtttgaagtacttgaagagcacatacagtttgagcgcaatctg
gacagacagaaaggtcgcatcatatccctctcctggcacccctctggcacacacatcgct
gctggcatgatggacatgatccgtgtctttgatgttccaactggtcatgctgtacagagg
ctcctggtggaccggggctttggaggctctaagagtcaggagacagtagtctggagcgtg
gccttcctgtcagaccatactgttgtaagcggggactctgctgggaaggtccaagtctgg
gacggacacaccggcactcttgtcaaaacacacctggtgaccaagtgggatgtgctggca
ctgtctgtctctaaggacgagagcagtgtggtggcagggacgtcagaaggcactgtgatc
cagttccagttcattgctcctactctgcatcagcagcaggacaaggagtgggtcagaacc
aggaccttcaagaaccacacgcatgatgtcagagccctggctgagatcgagactgccatc
gtctctggaggcatggatacccaccttgtagtgagacccctcttggagaagtttgatgag
aagtcacacgcttcaggacttcggaagatccactttccccatcgaaatctagtatcctgt
gcgaagaaggcaggactactgctcttccagttccctggtcagctggagctgtggagactg
ggagatagtgatggacatgggaagccaggagaccgcttgcctctgaagaggaagccggag
aaactcctccttctgaagagaaagggtgaagatcatatctgctgcagtgccctgtcctcc
tgtggaggatggctagcttattccaccgtgtcctgtgtgcgtatctacaggctgcagaca
gacaataataacatcagtattaccaaggtatccaaactcccaaaggctttacgctctgca
caccagctctgcttctcctcggactcctccaagatgtttgctgcctccagccaatcatca
gtcctcgttattgctcttacccagtctgagtgcaagtatgtgcacaccctcaagcccaag
tcagggtccaggcagcccattcacctaatgactaccagtgtagatgggaagtggctggcg
gccgcaaatagtgactgtgagatccacgtctacaatctacagaaactaaagctccattgt
atagtacctgtttatggttcctgtcccagtgccatggggatccaccccaccaccaacaac
atgacagtggtgcacgctgaccaacagttatttgagtactctatagtggagaagcagtac
acagactggagccgaaagctgcagaagcaggggctccacaacgtctggttggaccgggac
acacctgtcacccatgtgaccttcaacccgaaaaacccaaatcaagttgtcctgcacgac
atgcacatgttctgcataatcgaccaaagtctgcccctccctgaccagaagacccagttt
tacaatcagatgaccctcaggagcctatcagagcaggagaggcccagtcacctccatgct
ttcaaaatatgcaaaaccttccaggacctgctgtgtgtgagcctgttggatgaccagtct
ctggtggtggtggagcgccctctcctggccatcacatctcagctgcctgctccagtccga
cagaaaaagtttgcaacataa
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