Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139382545
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Entry
139382545 CDS
T10872
Name
(RefSeq) endothelial cell-selective adhesion molecule-like isoform X1
KO
K06787
endothelial cell adhesion molecule
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04514
Cell adhesion molecule (CAM) interaction
ocla04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
139382545
04517 IgSF CAM signaling
139382545
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139382545
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
CTX family
139382545
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Gene cluster
GFIT
Motif
Pfam:
V-set
Ig_3
I-set
Ig_2
ig
Ig_CD22
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
139382545
NCBI-ProteinID:
XP_070982747
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Position
24:complement(21556822..21629753)
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AA seq
578 aa
AA seq
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MAMSGRVRALLLLLWIFQGDSQRVEMPRRDMEVVKGQMVVLQAWYSPTSDIGRNSVIWNF
MANDSKQVISYSNGEPGIGSPEFRKRVGFSLSMPSANLSIYINNTQESDSGRYLCNVIIP
GAAGLSGEMRLNVKVPPSPPVCLMTGSSVLNGNVTLSCKSSSGKPIPQYKWTKNAPMSEV
FFSPMQKWRACPSTLLVLGFMDERQGTLRLSNLTKSMSGKYVCRASNTAGSDTCSINLEV
FTSSNAGAIVAATLGSIVALVAIILFLVFILRRRDHEEEELANDIKEDAQAPKRVSWAKS
GTGSDLLSKNGTLSSIATTPHLRDPQQPNNFRYPYPTAPASDTGSVFNAYRLRPGEPNPL
QGLPGYISGTPPPRHTRPLCVANNIDATSPHRHSRPPSSNHISGTLPPGHTRPLSTSIIV
DTPPHGFSQPPSPNHVGVTSPHGHSRPPSSNNIGTPSPHGNSQPPSSNNIGAPSPHGHSR
PPSSNHIGGNAPHRHSRPPSSNHSRPPSISSIPHYGHSRTSSSNGAPAHSPPGHMVTDPD
KTEGAQPQVPHPLTSPISSTTLACIGAVPAQSQAGSLV
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgtctgggagagtccgagcgctcctgttattgttatggatttttcaaggtgac
tcccagcgggtggagatgcccaggagagatatggaggtggtgaagggtcagatggtggtc
ctgcaggcatggtacagccccacatctgatatcggcaggaacagtgtcatctggaacttc
atggccaacgactccaagcaggtcatctcctacagtaacggtgagccagggatcggtagt
cctgagttcaggaagcgtgttgggttcagcctgtccatgccctcggccaatctctccatc
tacatcaacaacacccaggagtcagactcaggacgatacctctgcaatgtcatcatccct
ggagccgccggactctctggagaaatgcgccttaatgtcaaagtccctccctcgcctcca
gtgtgcttgatgactgggtcatctgtgctgaacggcaacgtgacactgagctgtaagtcc
agctcgggcaaacccatccctcagtacaagtggaccaagaatgcccccatgtcagaggtc
ttcttttcccccatgcagaaatggagagcctgcccctcgaccttgcttgttctagggttc
atggatgagaggcaaggcaccctcaggctgagtaacctcactaagagcatgtcagggaaa
tatgtgtgccgagctagcaacactgccggctctgacacttgctctatcaacctggaggtc
ttcacctcctctaatgctggagcgattgttgctgctactctggggtccatcgtggcactg
gtagccatcatactcttcctcgtcttcatactgaggaggagagaccatgaagaggaggag
ctagccaatgatatcaaggaggatgcccaggcacccaagcgtgtttcctgggcaaagagc
ggcactggctcagacctcctctccaaaaatggcacgctgtcctccatagccacgaccccg
catctacgagacccccagcagcccaacaacttccgctacccctaccccactgctccggcc
tctgacacaggctctgtgttcaatgcctaccgccttcggcctggagagcccaaccccttg
cagggcctcccagggtacatcagtggcacacctccacccaggcacaccagacccctctgt
gttgcaaacaacattgatgccacctctccacacaggcacagtcgaccccccagttctaac
cacatcagtgggactctaccccctggccacacccggcccctcagcactagtatcattgtt
gacacccctccccatgggttcagtcaaccccccagtcctaaccatgttggtgtcacctct
ccacatgggcacagcagaccccctagctctaacaacattggtaccccctccccacatggg
aacagtcaacccccaagttctaacaatatcggtgccccctctccacatgggcacagcaga
ccaccaagctcgaaccacattggcggtaacgctccacacaggcacagtcgacctcccagt
tccaaccacagccgacctcccagcatcagtagcattcctcactatggacatagcagaacc
tccagttccaacggtgccccagcccattccccacctggccacatggtcacagaccccgac
aaaactgagggcgcccagccccaggtgccacaccctctcacctcgccaatcagctccacc
accctggcctgtataggtgctgtgcccgctcagagccaggctggatcactggtatag
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