Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139391921
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Entry
139391921 CDS
T10872
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139391921
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139391921
09142 Cell motility
04820 Cytoskeleton in muscle cells
139391921
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocla00535
]
139391921
Proteoglycans [BR:
ocla00535
]
Extracellular matrix (ECM) proteoglycans
Others
139391921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
139391921
NCBI-ProteinID:
XP_070995631
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All DBs
Position
32:complement(26233482..26271654)
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AA seq
954 aa
AA seq
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MEHHCALLTRKRPRNPAMLLYSSTCMALLSLLLSPALGQLDLNRLDGDTAVCPPMRNGQD
DLPGFDLITQFQLDVIPLKGVRKVEGSTPLQVAYRLDREANFQIPTRLNFPRGFPDEYSV
MVTFRMIKNTVNKVWNVWQVVDEDGWKQAGLRLNGDQQALEYFLMGQDGNLQTVTFPGLS
VLFNTKWHKVMIGVERDQVTLYVDCQAVDKKPIKGKGPVNTEGDTLIGRLDTDADASVVF
ELQWMLIHCDPKRANRENCQELPITEMYANAEPDPKPIPGPPGPTGSEGPRGPHGEDGRD
GRDGLPGSPGSAGTSGAKGEQGEIGLPGHRGMPGLPGAAGIPGSMGPRGPVGERGLQGFP
GPAGSPGPETAGPPGPPGKAGTPGDEGNIGPEGAPGPRGGLGLPGPPGLPGPPGPVGPPG
AGKAEGSGEDCPAACPAGPQGSPGLPGIRGHKGLPGDDGAAGEAGQKGEPGPSGVQGLTG
KMGDDGQRGPIGFPGTLGEKGDRGPPGFNGIPGPTGPPGSPGVEGSRGRQGLEGDKGDDG
AIGPQGDQGPVGAKGDTGTPGEDGMGGLPGVDGAKGEAGVPGTVGVRGIVGIPGLPGKQG
LVGAGGAKGDTGDDGPVGPIGVPGKTGATGPAGEDGQPGDKGASGETGKQGPVGVTGDTG
IQGDKGDKGDTGEKGLKGHTGYKGDQGPIGPVGPKGSEGDPGLIGDSGVKGDQGSPGVPG
IKGEVGEKGMKGYTGEDGRPGQPGHEGLTGPQGTNGLEGERGLTGSPGPRGLPGPKVNDI
KLRELCSAIVEEHLAEFKKEVLKKPAAIGAPGMAGLPGPPGPPGPAGTVGDPGPRGLMGM
KGPHGYFGLPGTPGKQGDTGVKGDTGHKGEKGVGTPGSPGEPGPQGVAGSPGIGKDGKDG
PPGKDGVNGSPGASGPRGATGAPGYCDPSDCIGRPPPLYMMNGGKKSSSYRKGP
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggagcaccactgtgctctcttgacaaggaagcgaccacggaacccagcgatgttgctg
tactcctctacctgcatggccctcctctctctgctactctctcctgccctcggccagtta
gatctcaacaggttagatggggacacagctgtctgccctcccatgagaaatggacaagat
gaccttccagggtttgatctgatcacccagttccagctggatgttattcctctgaagggg
gtgaggaaggtggagggctccactcctctccaggtggcatatcgccttgatagggaggcc
aacttccagatccctaccaggctcaatttcccccggggtttccctgacgagtactccgtc
atggtcacgttccgtatgatcaagaacacagtgaacaaggtgtggaacgtgtggcaggtg
gtggatgaagacggctggaagcaggcagggctcaggctgaatggagaccagcaggccttg
gagtacttcctgatgggccaggatggcaacctgcagactgtcaccttcccagggctctct
gtgttgttcaacaccaagtggcacaaggtgatgattggggtggagagagaccaggtcacc
ctgtatgtggactgtcaggccgtggacaagaagcccatcaaggggaaaggccccgtcaac
acagagggagatacgcttattgggaggctggatactgacgctgatgcttctgttgtgttt
gaacttcagtggatgttgatccattgcgacccgaagagagccaatagagagaactgccag
gagttgcctatcacagagatgtatgccaatgctgagcctgaccccaagcctatccctggc
cctcccggtcccaccggctctgaggggccccgggggccacatggagaggacggcagggat
ggtagagatggccttccaggttcacctggcagtgctggaacttctggggccaaaggggaa
cagggggagatcggtcttcctggacacagaggcatgcctggcctaccaggagctgctgga
atacctggttcaatgggcccaagaggacctgtgggtgagagaggacttcaaggttttcct
gggccagcaggctctcccggacctgaaacagctggacctcccggcccacctgggaaagca
ggaactccaggagatgaggggaacattgggcctgagggtgcccctgggcctagagggggt
ctgggtctccctggtccccctggtctaccaggaccacctggacctgtgggaccacctggg
gctggcaaagctgaggggagtggggaagattgccctgctgcctgtccagctggaccacag
ggaagcccagggctaccagggataagggggcacaagggattaccaggtgatgatggagct
gcaggggaagctggacaaaagggtgagccaggaccatctggggtgcagggcctaacaggc
aagatgggagatgatggacaaagaggtccaattggttttcctggtactcttggagagaaa
ggagacaggggtccccctggtttcaatggcatcccaggacccaccggaccaccgggatct
cctggtgtggagggcagtcgtggacgtcagggtctggagggagataaaggtgatgatgga
gcgatcggtcctcaaggagatcagggtcctgttggagcaaagggagacactggtactcct
ggggaagacggcatgggtggactccctggagtggatggagctaaaggagaggctggcgtt
cccgggactgttggagtcaggggtatcgtcggaattccagggttaccaggaaaacagggg
ctagttggagctggaggtgccaagggtgatacaggagatgacggaccagtaggaccaatc
ggagttcctgggaagacaggggcaactggaccagcaggagaagatggacaaccaggagac
aagggagcttctggtgagacaggaaagcagggaccagtgggggtcacaggtgatacaggc
atccagggtgacaaaggggacaaaggtgacactggtgaaaaaggactgaaaggtcacact
ggatataagggagaccagggtcctattggtcccgttggcccaaagggaagtgaaggtgat
ccaggtcttataggcgattctggagtcaagggagaccagggttctcctggtgttcctgga
atcaaaggagaggttggagagaagggcatgaagggatataccggggaagatggtagacca
gggcagccaggtcatgaaggtttgaccggtccccagggaaccaatggactggagggagag
agagggttaactggatcacctgggcctaggggcctacctggtcctaaagtgaatgatatc
aaacttcgcgaactatgctcagcaattgttgaagaacacttggcagagtttaagaaggag
gtactgaagaaaccagcagcgatcggggcccctggaatggcaggactgccgggccctcca
ggtcccccgggcccagcagggactgtaggagatccaggccccagaggactgatgggaatg
aagggaccacatggatactttgggttaccaggtacacctggaaaacaaggtgacactggt
gtaaagggggatacaggacataagggagaaaagggagtgggaaccccaggaagtccaggc
gaaccaggcccacaaggtgtggctggcagccctggcattgggaaggacggtaaagatgga
cctcccggtaaagacggtgttaatggtagcccaggtgcctctggtcccaggggagctaca
ggagccccaggctattgtgacccctcagactgtataggcaggcccccacctctctacatg
atgaatggggggaagaaatcctccagctacaggaaggggccgtga
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