KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139392448
Entry
139392448         CDS       T10872                                 
Name
(RefSeq) nucleoporin SEH1
  KO
K14299  nucleoporin SEH1
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013  Nucleocytoplasmic transport
ocla04150  mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    139392448
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    139392448
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ocla03019]
    139392448
   04131 Membrane trafficking [BR:ocla04131]
    139392448
Messenger RNA biogenesis [BR:ocla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     139392448
Membrane trafficking [BR:ocla04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    139392448
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR5 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_WDR3_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd EIF3I Beta-prop_EIPR1 WDR55 Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR35_TULP_N Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_C Beta-prop_IFT140_1st Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 139392448
NCBI-ProteinID: XP_070996541
LinkDB
Position
32:707359..723756
AA seq 363 aa
MFVARSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVK
FAPKHMGLMLTTCSADGVMRVYEAPDVMNLSQWSLQQEISSKLSCSCISWSPSSSRAHAP
MIAVGSDDSNTAYSGKVHIYEYIENTRKYAKAENLMTVTDPVHDIAFAPNLGRSFHVLAI
ATKDVRIFKLIPLRKESAAGSSGPTKLQVQILAQFDNHNSQVWRVSWNISSTLLASSGDD
GCVRLWKANYMDNWKCTAILRGDGSPVTGSSSQAAVPSTAGGPQHVLLQASSAGRKKAQL
IPG
NT seq 1092 nt   +upstreamnt  +downstreamnt
atgtttgtcgctcgaagtattgcagcggaccacaaggatcttattcatgatgtttcatat
gatttccatggccggagaatggcaacttgctctagtgaccaaagtgtcaaggtgtgggac
aagagtgacaacggagagtggaactgcactgccagctggaagacccatagtggatcagtg
tggagggtgacctgggcccatccagagtttggtcaggtgctggcctcctgctccttcgac
cggaccgctgctgtgtgggaggagatcgttggggagtccaatgacaaacaacgaggactc
agtcactggatcaagaggaccactctggtggatagcagaacgtcggtgactgacgtgaag
tttgcccctaaacacatgggtctgatgctgaccacgtgctcagcagatggggttatgagg
gtctacgaggctccagacgtgatgaacctcagccagtggtccctgcagcaggagatctcc
tctaaactcagctgctcctgtatctcctggagcccctccagctcccgtgcccacgccccc
atgatagcagtgggctctgatgacagcaacacagcatacagcgggaaagttcacatctat
gaatacattgaaaacacaaggaagtatgctaaggcagaaaatctgatgacggtgacagat
ccagtccatgacattgcctttgctcccaacttgggacgctcttttcacgtgctcgccatc
gccaccaaagacgtacgcatcttcaagctgataccactgaggaaagagtctgcagcgggg
tcgtctggtcccactaagctgcaggttcagattctggcccagtttgacaaccacaactcc
caggtgtggagagtctcctggaacatcagcagcaccctgcttgcctcctcaggggatgat
ggctgtgtccggctctggaaagccaactacatggataactggaagtgtacagccatcctg
agaggagatggtagcccagtgacgggctcttccagtcaggctgcagtccccagcacagca
gggggaccacaacatgtcctgctgcaagcgtcctccgctggaagaaagaaagctcagctg
atacctggctaa

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