Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139392534
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Entry
139392534 CDS
T10872
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04382
Cornified envelope formation
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04518
Integrin signaling
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139392534
04518 Integrin signaling
139392534
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139392534
09142 Cell motility
04820 Cytoskeleton in muscle cells
139392534
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139392534
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139392534
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139392534
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
139392534
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139392534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
139392534
NCBI-ProteinID:
XP_070996680
LinkDB
All DBs
Position
33:complement(870969..983211)
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AA seq
1669 aa
AA seq
DB search
MTDFLTFSPLLLSVLLLLLSGIITPAYTDDVCSCTGKSRCHCDGVKGSKGEPGYPGSDGL
PGVVGYPGFEGNPGPFGPKGNLGFPGLSGPKGSRGLPGKPGFSGPPGQPGIPGNEGPMGP
SGTPGCNGTKGDSGYPGLPGVPGPVGLPGVHGLPGFKGDSYYFPPAAEVDGHLGPQGRDG
VKGQRGLPGRPGLPGLEGPSGTPGLPGLTGVQGEKGQEGPSPVIPGPRGQKGDQGPPGIP
GQKGIKLYAEGPKELKGEPGDTGEKGCTGQHGLPGRRGYKGNKGDQGEPGALGKPGKDGD
PGTYGIQGEKGDVGFQGPPGTEGSMGDKGDRGPTGPPGDLIQINGRIKGLQGFPGPLGPP
GYTGNQGVIGFPGMKGEPGLSFPGAPGNPGPPGLAGDKGERGEPAPYIIGPPGPTGPPGN
DGPIGDRGPPGIPDLLRGNPGPPGPKGIKGIPGQPGDRGGFGETGEKGDVCRLCMPTNVS
PGPPGPAGEPGRPGDTGRDGDPGSKGSRGVKGLGGPPGPQGPYGLPGVPGSTGPKGDKSP
MSPGDKGPVGSPGAPGVPGSDGTDGVPGYPGLKGQPGLKGNPGPPGPKGDRGDAGSQGIR
GRTGQMGTQGPPGVGPPGGPGQKGNLGVQGLRGRPGDPGEKGSAGETVTTTGDPGLKGEK
GQQGNPGPSGNPGINGYPGFPGNFGAKGDRGLSVRGPPGNTGPKGEKGQPGVAGAPGIGS
MGRPGPSGAPGMPGPKGDFRPGLPGLPGRPGPPGEDGSLGLTGDSGRPGLGRSPGLPGRD
GPQGDRGSKGAEGLPGLPGVAGECTLGIPGTPGAVGLKGIIGLTGTRGQKGVQGDSGLPG
RGAPGLIGPFGRPGFDGPPGSGGAAGLNGFRGRDGVPGVPGLRGDMGPSGACGTPGPDGG
PGPGGRLGPKGLMGADGVKGRVGARGPVGDSGAPGDIGVTTYIEVHGDPGDPGPTGLRGL
TGAKGDLGVIGHNGASGKDGIPGSAGPQGAVGDPGRDGQKGSPGFNGNPGVAGDMGVPGV
KGEKGGTGGRGEPGSSGRPGPNGVNGVKGEPSLPGPGAKGRQGEKGVPGFPGFPGEKGEM
GVAGRFGTLGAIGPTGPKGREGLQGSRGPPGPAGEKGINGLPGNAGCHGQNGLQGSPGLA
GDPGTAGPRGSQGRDGIPGPAGEKGDMGAPGIGPKGTDGKTGQSGLKGDVGIPGRFGPPG
PSGLLGDIGPPGPPGPMGLSGSPGRDGMCFEGLKGDRGQNGVPGPQGMQGPRGPPGPPGP
GFKGDKGNKGAMGLLGTPGYRGDTGVQGRPGNDGRPGGLGVKGEMGQLGDIGPNGQKGDA
GPAGPVGCLGQKGQSGAPGPKGKDDLTMAVLIPGEQGLPGDLGGRGEPGPTGAQGRNGPP
GLPGPKGVLGLDGPIGLPGFQAAKGDRGFPGPQGIQGEQGTPGAKGPRGSPGPYFAGPIE
DGFLFTRHSQRQNVPQCPGGSNFIYSGYSLLFINGNNRGHGQDLGTLGSCLPRFSTMPFL
FCNTDSTCRYASRNDYSYWLSTDEAMPSDMALISGASLESYVSRCAVCETKANIIAVHSQ
TNQIPVCPRGWLSLWAGYSFVMQTGAGAEGSGQPLASPGSCLEEFRKIPFIECHGRGTCN
YYTDSYSYWLASLDPENMFSKPRPQTVKGDCPGSIVSRCQVCMKQWQRP
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgacagactttctcactttttccccactgctcctgagcgtcctgttgctactgctcagc
ggcatcatcacacctgcatacacagatgatgtgtgtagctgcaccggaaagtccaggtgt
cactgtgatggagtaaaaggcagtaagggtgagcctgggtatccaggttctgatgggttg
ccaggagtggttggttatccaggttttgaaggtaatcctggaccttttggccctaaggga
aatcttggctttcctggattgtcaggacccaaaggctcacggggtctccctgggaaacct
gggttctctggaccacctgggcagccaggaatcccaggaaatgaaggaccaatggggcca
tcaggaaccccaggatgcaatgggacgaagggggacagtggatacccagggttacctggg
gtgccgggacctgttggattaccaggtgttcatggattgccaggatttaagggagactcc
tactacttcccacccgctgctgaggttgatggacatcttggaccacaagggagagatggt
gtcaagggtcagcgagggttacctggacggccgggtcttcctgggctggagggaccaagc
gggactccaggattacctgggttaacaggtgtacagggagagaagggccaggaaggtcca
agccctgtaattccaggtccaagaggtcaaaagggtgaccaaggccctcccgggatacct
ggacagaagggcataaagctgtatgcagagggacccaaggaactgaagggggagccaggt
gatacaggagagaaggggtgtacaggccagcatggtctccctgggcgtcgtggatataaa
gggaacaaaggcgaccaaggagaacctggggctctggggaaacctgggaaagatggggac
cctgggacctatggaattcagggtgagaaaggtgatgtgggcttccagggacctcctgga
acagaaggttcaatgggtgacaaaggtgaccgcggacccacaggtcctccaggggatttg
attcaaatcaatgggagaatcaaaggcttgcagggttttcctgggcccctcggaccccct
ggctatactggtaatcaaggtgtgattggttttcctggaatgaagggggaaccagggttg
tctttccctggggcccctgggaatcctggtccccctggtttagctggggataaaggggag
aggggggagcctgccccctacataattggcccccctggacccactggcccccctggaaac
gatggccccataggcgaccgtggtccccctggaattccagatctgttgagaggcaaccct
ggaccacccggtcctaaaggcatcaaaggcatcccaggacaaccaggagatagaggcggg
ttcggagaaacaggtgagaagggtgatgtctgtcgactctgcatgccgactaatgtgagc
cctggaccaccaggacctgccggagagcctggtaggcctggagatacaggtcgagatggt
gatcctggatccaagggatctagaggagtcaaaggtcttggaggtccaccaggtccacag
ggtccctatggtttaccaggtgtgccaggttctacaggacccaagggggacaaaagtccc
atgtccccaggagacaaggggcctgttggctcacctggggctccaggagttcctgggagc
gatgggactgacggggtccctggatacccaggactgaaaggccagcctgggctaaagggc
aaccctggacctccggggcccaagggtgatcggggcgatgccggctctcagggtatacgt
ggacggacaggccagatggggactcagggccccccaggtgtggggcccccagggggccct
ggacagaagggcaacctgggggtgcaaggcctgcgagggagacctggagatccaggtgag
aaaggctcagcgggtgagacggtaacaaccacaggagacccaggactgaagggagagaag
ggtcaacaaggcaacccaggaccttcagggaatcctggtataaatggctatcctggcttc
cctggcaatttcggcgccaagggggatagaggtctgtctgtccggggccctcctggcaac
actgggcctaaaggtgagaagggccagccgggggttgctggtgccccagggattggtagt
atgggacgaccaggaccatccggagctcccgggatgccaggccctaagggtgatttcaga
ccagggctcccagggctgccaggtagaccaggccccccaggggaggatggttctctgggg
ctgactggagactctggtcggcctgggcttggtagatcgcctggcctaccaggaagagat
ggtccacagggagacagaggcagtaaaggtgctgagggcttgcctggtctgcctggggtt
gctggggagtgtacgctaggcattccaggcactccgggggctgtaggtctcaaaggaatc
attggcttaacagggaccagaggacagaagggggtgcagggcgattcaggtctgcctggc
agaggggccccaggattgattggaccgtttggacggcccgggtttgatggacccccggga
tctgggggggctgccggcctgaatggattcagaggaagagatggtgtacctggggtacca
ggcctgagaggagacatggggccatcaggagcgtgtggtacaccaggaccagacggaggc
ccaggaccagggggacgacttggccctaaaggtctgatgggtgctgatggggtgaagggc
cgtgtaggagccaggggacctgtgggagattctggggctcctggagatattggagtcaca
acatacatcgaggtccatggggaccctggggacccaggacctacaggtctaaggggctta
acaggtgccaaaggagatctaggtgtgatagggcacaatggagccagtggcaaggatggg
attcccgggagcgccgggccgcaaggtgctgttggcgacccaggcagagatggccagaaa
ggaagtcctggtttcaatggaaatcctggagtcgcaggagatatgggtgtgccaggtgta
aagggtgagaaagggggaacaggaggtcgtggagagcctggttcatcgggaagaccaggt
ccaaatggagtaaatggagtgaaaggagagcccagcctccctggaccaggagctaaagga
cgacaaggagaaaagggagtgccagggtttccaggttttccaggagagaagggggagatg
ggtgtagcagggaggttcggaaccctgggggccatcggccccacaggacccaagggaaga
gaaggactacagggatcacgaggacctccgggaccagccggggagaagggcattaatggt
ctcccaggcaatgctggctgtcatggccagaatggcctgcaagggagcccaggattggct
ggtgacccagggactgcaggccccagaggttcccagggtagagacggcatccctggccca
gcaggagagaaaggagacatgggagcccctggcattggaccaaaaggcacagacggaaag
acaggccaatctggacttaagggggatgtggggatacctggccgctttggccctcctggt
ccctcagggcttttgggggacattggacctccaggcccccctggtcctatgggactgtct
ggaagtcctggccgggatggaatgtgctttgaagggctaaaaggagaccgtggacaaaat
ggtgtccctggaccccaaggtatgcaggggccacggggacctcctggtccaccaggacct
ggctttaaaggagataaagggaacaaaggtgccatgggtctcctgggtacgcctgggtac
agaggagacacaggggtacagggcagaccgggtaatgatggcagaccaggtggtttggga
gtcaaaggggagatgggacagttaggagacatcggaccaaacggtcagaaaggagatgca
ggacctgcaggacctgtaggttgccttggacagaaagggcagtctggagcaccagggcct
aaggggaaagatgatctcaccatggcggtactgatccccggagaacaggggctgccgggt
gacctggggggcagaggagagcctggacccacaggagctcagggacgcaacggaccacca
ggactcccaggtccaaaaggtgtcttgggcctagatgggccaataggactgcctggattc
caggcagccaagggagacagagggttccctggaccacaaggtatccaaggtgagcagggg
actccaggagccaaaggcccccggggctctccaggtccttactttgccgggccaatagag
gacggcttcctattcacccgtcacagccagagacagaatgtgccccagtgcccagggggc
agcaacttcatctactccggatactccctcctcttcatcaacggcaacaacagaggtcat
ggccaggatctgggtacactgggaagctgtctgcctcgtttctctaccatgcccttctta
ttctgcaacacggacagcacgtgccgctacgcctcccgtaacgactactcctactggctg
tccacagatgaggccatgccaagcgacatggccctcatctctggtgcttcactggagagc
tatgtcagcaggtgtgcagtgtgtgagacaaaagcaaacatcatcgctgttcacagtcag
acaaaccaaatccctgtttgtccacggggctggctctctctctgggctggctactctttt
gtcatgcaaacaggggctggagcggagggctctggccagcccctggcctctccgggctcc
tgcctagaagagttccggaagattcccttcattgagtgccatgggcgagggacatgcaac
tactacactgactcctacagttactggctggcctccctggaccccgaaaacatgttcagt
aaacccaggcctcagacagtgaagggagactgcccgggtagtatagtcagtcgttgtcag
gtctgtatgaagcagtggcagcgaccctaa
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integrated database retrieval system
