Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139393734
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Entry
139393734 CDS
T10872
Name
(RefSeq) exosome complex component RRP45-like
KO
K03678
exosome complex component RRP45
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139393734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139393734
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
139393734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PemK_toxin
Motif
Other DBs
NCBI-GeneID:
139393734
NCBI-ProteinID:
XP_070998187
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MRDTPLSNCERDFLLKAIQEKKRLDGRQTYDYRSIKISFGTDYGCCFVDLGKTRIMAQVS
CELITPKENRPNEGLIFFNIELSPMASPAFEMGRQSELLVKLNRQLERCLRNSKCIDTES
LCVVSGEKVWQIRVDVHLLNHDGNLMDAASIAAIAALCHFRRPDVGIQGEEVTVYSTEER
DPIPLSIYHMPICVSFSFFQQGTYLLVDPCEREERVMDGLLMIAMNKHREICSIQSSGGI
MLLKDQVLRCSKIASVKVSEITELINKALENDKKARKTGGKFGFAESLPQERITALKTDV
SPVEMSDVKERANEIVQRAEVPPQTVPSPVLTAPGTGQVGEGLENSWGLKEEEEEEEDET
VELKMELEEGHEEKGRGDVVVISDSDSEEEDVVILNQVTTKEKASISNQQGAVASKQQQQ
QKKKKRGQ
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgagagatacgccgttatcaaactgcgagcgggactttttactcaaagctattcaagaa
aaaaagcgcttggatgggagacagacctatgactacaggagcatcaagatctcgttcggg
acagattatggatgctgctttgttgacctggggaagacgaggatcatggcccaggtgtcc
tgtgagctcattactccgaaagagaaccgaccgaatgaaggactcattttcttcaacatt
gagctgtctcccatggcttctccagcatttgagatgggcaggcagtcagagctgttggtg
aagctgaacagacagttggagagatgcctcaggaactccaagtgtatagacacagagtct
ctgtgtgtggtgtctggagagaaggtgtggcagattagggtggacgtccacttgctgaac
cacgatggtaacctaatggacgctgccagcattgctgccatcgcggccctctgtcacttc
agacggcccgatgtgggcatccagggagaggaagtcactgtgtacagtacagaggagaga
gaccccattcccctcagcatctaccacatgcccatctgtgtcagtttctccttcttccaa
caagggacctacctgttggttgacccgtgtgagcgtgaggagcgtgtgatggacggcctg
ctgatgatagccatgaacaaacacagagagatctgctccatccagtctagtggaggcatc
atgctgctcaaagaccaggtcctcaggtgcagtaagatcgctagtgtcaaagtgtcagag
atcacagagctaatcaacaaagccttggagaacgacaagaaagccagaaaaactgggggt
aagtttggcttcgcagagtcattgccccaggagcgaatcacagcgctgaaaacagacgtg
tcacctgtggaaatgagtgacgtcaaggagagggccaatgagatcgtccagagagctgag
gtcccgccccaaaccgttccctctccagtgttaactgcgccaggtacaggccaggtgggg
gaggggctagagaactcctggggtctgaaggaagaggaggaggaggaggaagatgagacg
gtggagttgaagatggagttggaagagggacatgaggagaaggggagaggtgacgtggtg
gtcatctcagacagtgacagcgaggaggaggatgttgtcatcttgaaccaggtaacaaca
aaggagaaggcctccatctctaaccaacagggggcagtagcctccaagcagcagcagcag
cagaagaagaagaagagggggcagtag
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integrated database retrieval system
