Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139396368
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Entry
139396368 CDS
T10872
Name
(RefSeq) collagen alpha-2(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139396368
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139396368
09142 Cell motility
04820 Cytoskeleton in muscle cells
139396368
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocla00535
]
139396368
Proteoglycans [BR:
ocla00535
]
Extracellular matrix (ECM) proteoglycans
Others
139396368
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
139396368
NCBI-ProteinID:
XP_070999502
LinkDB
All DBs
Position
Unknown
AA seq
457 aa
AA seq
DB search
MSGLSAVLKSWVILQTLCLALAQVNGPPGPQGNPGPPGPSGTPGSDGIDGEKGPPGPSGP
PGLKGDPGEPGPDGAPGENGIDGLMGAKGDGGPIGNPGPKGQPGPGGEPGPTGPGLPGLA
GAPGPIGLPGEIGQTGPTGILGEPGPPGIPGPPGKPGPPGKFLGGEEGSADFQCPINCPA
GPKGPQGLQGVKGHKGRAGVLGEPGSIGKLGTKGEVGISGELGIPGPPGPMGLRGYPGMM
GPKAEAGPRGYKGINGPVGQPGPPGEEGPQGPPGEAGEKGDLGGRGIKGPQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGAPGQAGRPGGPGHQGTAGLPGSPGTKGGPGGKGEPGPRGHV
GMSGAPGPQGEPGLPGEAGMEGVPGPKGDRGQRGAVGPQGIVGKAGNKGMRGPMGVPGAQ
GISGTKGDNYPNGLLVAVLTHKSSSLIKMLPLSHTEP
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgtctggactctcggcagtgttgaagagctgggtcatcctgcagactctgtgcctggct
ctggcccaagtgaacggtcctccaggacctcaaggcaatcccggtccgcccggtccctct
ggcacccccgggtctgatggcattgatggggaaaagggacctcctgggccttctggccca
ccagggttgaagggggacccaggtgagcctggtccagatggagctcccggagagaacggc
atcgacggtttgatgggagcaaagggagacggcggccctatcgggaaccctggacctaaa
ggccagcctggacctggtggtgaacctggacccactggacccggactgcctggactggct
ggagccccaggcccaatcggccttcccggtgagattggacagactggacctacgggcata
ttgggagaacctggacctccaggaattccaggacccccaggaaaaccaggtcctccaggg
aagttcttgggaggagaggagggcagtgcagacttccagtgtccaatcaactgcccagca
gggcctaagggtccccagggtctgcagggggtcaagggacacaaaggtcgtgctggtgtg
ctgggagagcctggcagcattgggaaactgggtacgaagggagaggtcggcatctctggt
gagctgggaatcccaggacccccgggtcctatgggattgaggggttacccaggaatgatg
ggccccaaggcagaggcgggccctcgtggttacaagggcatcaatggaccagttggccaa
cctggacccccaggtgaggagggacctcagggaccacctggagaggctggggagaaagga
gatttaggtggtcgaggtatcaagggcccacagggagccgttggcaagaagggagagaac
ggtctgcctggtatcgatggaaaggatggcactcctggcatccctggaatcaagggtgcc
ccagggcaggctgggaggcctggtggtcccggtcaccagggaacagcaggtttgcctggc
agccccggaaccaagggtggacctggaggcaagggagagcctggtcccagaggtcatgtt
ggaatgtctggtgccccaggacctcagggtgagcctggtcttcctggtgaagctggtatg
gagggcgttcctggacctaagggtgacagaggccagaggggagctgtagggccacagggt
attgtcggcaaggctggcaacaagggtatgagagggcctatgggtgtcccaggggctcaa
ggcatctcaggaaccaagggagacaattatccaaatggcctgttggtggcagtgctgacc
cacaaatcctccagcctcataaagatgctgccgttgtcccacacagagccttag
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