Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139397722
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Entry
139397722 CDS
T10872
Name
(RefSeq) sodium channel protein type 2 subunit alpha-like isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139397722
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
139397722
BRITE hierarchy
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GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
Na_trans_cytopl
PFF1_TM
GPHH
Zip
IQ
ATP-synt_B
New_glue
Motif
Other DBs
NCBI-GeneID:
139397722
NCBI-ProteinID:
XP_071000312
LinkDB
All DBs
Position
3:53440075..53494654
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AA seq
1882 aa
AA seq
DB search
MMEQLLVPPGPDSFRPFCRESLDAIERRIADENAKKSKAKPNNDDDDGPKPSSDLEAGKS
LPLIYGDIPKGLVSTPLEDLDTFYSNQKTFIVLNRGKAIFRFNATPALYVLNPFNPLRRI
SIKVLVHSLFSMVIMLTILTNCAFMTLSQPPDWTKNVEYTFTGIYTFESLIKILARGFCV
GKFTFLRDPWNWLDFCVIVMAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALVGLQLFMGNLRNKCLRIPLNSTNLFDDSVDFNGTDLN
KTSSFNWTSYTNDPKNYYYLPGKKDALLCGNGSGAGLCPEGFWCIKAGRNPDYGYTSFDT
FSWAFLSLFRLMTQDYWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLINLILAVVAMAYD
EQNQATIEEAQQKEEEFQKLKRQQEDAQAAAAVTAAESGEFSERGELTDTSSEASKLSSK
SAKERRNRRKKKKQREEEERGDNDKFHRSESEGSMQKSRFRFSIDASNLLNYDMRCSTPH
QGNTTEPEYRKARCESYQASMNFLEDPGARQRAFSVASVITNTMEELEESRQECPPCWYK
FANTFLIWDCCPAWLRIKKRVKMIVMDPFVDLTITICIVLNTVFMAMEHHSMSVDFKKML
SVGNLVFTGIFTAEMCFKIIALDPYCYFKEGWNIFDGIIVSLSLMEIGLANVSGMSVLRS
FRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYRDCV
CKISTDCTLPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFMMVMVIGN
LVVLNLFLALLLSSFSADNLAATDDDSEMNNLTVAIGRIHQGIAFVKALVCRSFHSICLR
KKKGSLNEDKPLDDLHRTNYNSNHTTVEIMKDPEYVKDDNGTTGGVGMGVGSNAAGKYIV
NDNTDYMQFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDIEGSKEQLSKDRPLSSSE
GSTVDIRPPGEREGSVDMEPEESMEAEGCFTDGCVRRFQCCQVNVEEGKWKMWWTLRKTC
FRIVEHNWFESFIIFMILLSSGALAFEDIYIEQRKTIKTVLEFADKVFTYIFILEMLLKW
VAYGFAKYFTNAWCWLDFLIVDVSLVSLVANALGYAELSAIKSLRTLRALRPLRALSRFE
GMRVVINALLGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKYYHCINMTTSERFEVRDVA
NKTECLALKGTHWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRNLDDQPDYEV
NLYMYLYFVVFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLG
SKKPQKPIPRPVNKFQGFVFDFITKQAFDIVIMILICLNMVTMMVETDDQADDIRKILYK
INLVFIVMFTGECILKMISLRQYYFTIGWNVFDFIVVILSIIGMFLSELIEKYLVSPTLF
RVIRLARIGRILRLIKSAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYV
KKESGIDDMFNFETFGNSMICLFQITTSGGWDVLLAPILNKGEPDCDSRKEHPGSTYKGG
DCGNPSVAIIFFVSYIIICFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEK
FDARATQFMEYDKLSDFADALDPPLRISKPNKIQLSSMDLPMVSGERIHCLDILFAFTKR
VLGEGEGLDILRGQMEERFMASNPSKVSYEPITTTLRRKLEDMSALVIQRAFRRYLLKRI
VKRASAMYKEKIQSGGTLLDKEVLVIDKFPEISTSDRTDMTPSTASPPSYDSVTKPEKNK
YEKDKRKKEVKEKKKYMDVGKI
NT seq
5649 nt
NT seq
+upstream
nt +downstream
nt
atgatggaacagctgcttgtaccgccaggaccagacagcttccgcccgttttgtcgtgag
tccctcgatgccatcgagaggcggatcgctgacgagaacgccaagaagtccaaggcgaag
cccaacaacgatgacgacgacgggcctaagcccagcagtgacctggaggctggcaaatca
ctgccactcatatatggggacattcccaaaggattggtgtctacaccactggaggacttg
gacactttctacagcaatcagaaaacctttatagtgttgaaccgagggaaggccatcttc
cgcttcaatgccactcctgcattgtatgtcttaaaccccttcaaccctcttagaagaata
tcaattaaggttttggtacactcattgttcagcatggtaatcatgttgactatccttacc
aactgtgcgtttatgaccctgagtcagcccccggactggacaaagaatgtcgagtacaca
ttcactggaatctatacatttgaatctcttataaaaattctggcaaggggcttctgtgta
gggaagtttacctttctccgagacccatggaattggttggatttctgtgttattgtcatg
gcgtatgtaacagagtttgtaaacctaggcaatgtttcagctcttcgcactttcagagta
ctaagagctttgaaaactatttcagttatcccaggcctgaagaccattgtgggagcgctg
atccagtcagtgaagaaactgtcagacgtgatgatcctcactgtattctgcctaagtgtc
tttgccctagtagggctgcagctgttcatggggaatttaagaaacaaatgtttaaggatc
cctcttaactcaaccaacctctttgatgattcagtcgactttaatgggacggacctcaac
aagaccagctcgttcaactggacctcttacacgaatgatcccaaaaattattactacctc
ccaggtaaaaaagatgctttgctttgtggaaatggcagtggtgccgggctgtgcccagag
ggattctggtgcatcaaagcgggccggaacccagattacggctacaccagttttgacacg
ttcagctgggccttcctgtctctgttcagactgatgactcaggactactgggagaacctc
taccagcagaccctgagggctgctgggaagccatacatgatcttctttgtgttggtcatc
ttcctgggctccttctaccttatcaacctaatcctggctgtggttgccatggcctacgac
gagcagaaccaggccaccattgaggaggctcagcagaaggaggaggagtttcagaagctg
aagagacagcaggaggatgcacaggcggcggcagcggtgacagcggctgagagtggggag
ttcagtgagagaggggagctcactgacacctcctccgaggcctccaaactcagttccaag
agtgccaaagagagacgcaacaggcgcaagaagaaaaagcaaagagaggaggaggagaga
ggggacaatgacaagtttcacaggtctgagtctgagggcagtatgcaaaagagtcgtttc
cgcttctccatagatgcctccaacctgctcaactacgacatgagatgttccacaccacac
cagggcaacactacggagccagagtacagaaaggcccgatgtgaatcgtaccaggcctct
atgaacttcctggaggacccaggggccaggcagagggccttcagtgtagctagtgttata
actaacactatggaagaacttgaagagtcgagacaggaatgccctccctgctggtacaag
ttcgccaacaccttcctcatctgggactgttgtccggcatggctgaggatcaagaagaga
gtcaagatgatcgtgatggacccgtttgtagacctgactatcaccatatgtattgttctg
aacacagtgttcatggctatggagcaccactcaatgtctgtggatttcaaaaaaatgctt
tctgtgggaaacctggtgttcacaggtatcttcacagctgagatgtgtttcaagattatt
gctttggatccgtactgttattttaaggaaggctggaatatatttgatggtatcattgtc
agtttgagcttgatggagattggcttggccaacgtgtctggaatgtctgtcctcagatcg
ttccgattgctgagagtgttcaaactggccaagtcttggcccacactgaacatgctgatc
aagatcattggtaactcagtgggggctctgggtaacctcaccctggtcctggccatcatc
gtcttcatcttcgcggtggtgggcatgcagctgtttgggaagaactacagagactgtgta
tgtaagatctctacagactgcacactgccccgctggcacatgcatgacttcttccactcc
ttcctgattgtgttccgggtgctgtgtggggagtggatcgagaccatgtgggactgtatg
gaggtggctggccagagcatgtgtctcatcgtcttcatgatggtcatggtcatcgggaac
ctggtggtcctgaatctgttcctggccctgctgctgagctcgttcagtgctgataacctg
gcggccacggatgatgacagcgagatgaacaatctgacggtggccataggccgcatccac
cagggcatcgcctttgtcaaggccttggtgtgccgctccttccacagcatctgtctgagg
aaaaagaaggggagcctgaacgaggacaagcccctggatgacctccacagaaccaactac
aactccaaccacaccactgtggagatcatgaaagaccctgaatatgtgaaggatgacaat
ggcaccaccggtggggtaggcatgggagtgggtagcaatgcagctgggaagtacatagtc
aacgacaacactgactacatgcagttcatccacaaccccagtctgaccgtcacggtgccc
atcgctgtgggggagtcggactttgaaaacctcaacactgaggacttcagcagcgattcc
tcggacatagagggaagcaaagagcagctaagtaaagaccgtccactgagctcatcagag
ggcagtacagtggacatcaggcccccaggagagagagagggctcggtggacatggagcct
gaggagtccatggaagctgaaggatgcttcactgatggctgtgtccgtagattccaatgc
tgccaagtgaacgttgaggagggcaagtggaagatgtggtggacgttgaggaagacctgc
ttcaggatagtggagcacaactggtttgagagctttatcatcttcatgatcctgctcagc
agtggagcgctggcatttgaggacatctacatcgaacagaggaagaccattaagacggtg
ttggagtttgcggacaaagtcttcacctacatcttcatcctggagatgttgctgaaatgg
gtggcctatggatttgccaaatacttcaccaacgcctggtgctggttggactttcttatt
gttgacgtctctttggtcagccttgtggccaacgccctgggctacgctgagctgagtgcc
atcaagtccctgaggacgctgcgagcgctgaggcccctgagagcgctgtcccgcttcgag
ggcatgagggtggtcatcaacgctctgcttggagccatcccctccatcttcaatgtgctg
ctggtgtgcctcatcttctggctcatcttcagcatcatgggtgtcaacctgtttgcaggg
aaatactaccattgtatcaacatgaccacgagtgagcgcttcgaagtcagagacgtggca
aacaagacagaatgtttggctttgaaaggtacccactggaagaatgtcaagatcaacttt
gataacgtgggagcaggctatctggcactgttacaagtggctacattcaaaggctggatg
gatatcatgtatgcagctgtggactctcgcaatttggatgatcaacccgactacgaagtg
aatctgtacatgtatctgtactttgtggtattcatcatatttggatccttcttcacactc
aacctcttcattggtgtcattatagacaacttcaatcagcaaaagaaaaagtttggaggt
caagacatcttcatgacagaggaacagaagaaatactacaatgctatgaagaagctcggc
tcaaagaaaccccaaaagcctatccctaggccagtgaacaagtttcaaggatttgttttt
gatttcattacaaagcaagccttcgacattgtcatcatgattcttatatgccttaatatg
gtcaccatgatggtggagacggatgaccaggcagatgacattcgtaaaattctctacaag
atcaacctggtgtttattgtcatgttcaccggagagtgtattctgaagatgatctcactc
cgacaatactactttaccattggttggaatgtatttgactttatcgttgttatcctgtcg
ataattggtatgtttctctcggaactgatagagaagtacttggtttcaccaaccttattc
agagtcattcgactggcccgaattggccgtatccttcgcctcatcaagagtgccaaggga
atccgtacactcttgtttgcgttgatgatgtcacttcctgcattgttcaacattggtctt
ctgctcttcttagtgatgtttatctatgcaatctttggcatgtccaactttgcatacgtc
aagaaggagtctgggattgacgacatgttcaactttgagacgttcggcaacagcatgatc
tgcctgttccagatcaccacgtcaggaggctgggatgtcctgctggcccccatcctcaac
aagggagagccagactgcgacagccggaaagagcacccaggaagcacgtacaagggggga
gactgtggaaacccctctgtggccattatcttctttgtgagctacataatcatatgtttc
cttgttgtggtcaacatgtacattgctgtcatcttagagaacttcagtgtggccactgag
gagagcgctgagcccctgagcgaggatgactttgagatgttctacgaggtctgggagaag
tttgatgcgcgggccacccagttcatggagtatgacaagctgtcagactttgctgacgcc
ctagaccccccgctacgcatctctaagcccaacaagatccagttgagctcaatggattta
cccatggtgagtggggagcgcatccactgcctggacatcctgtttgccttcaccaaacgt
gtcctgggcgagggcgaaggcttggacatcctccggggtcaaatggaggagcgctttatg
gcctccaacccttccaaggtgtcctacgaaccaatcaccaccacactgcgccgcaagcta
gaggacatgtctgccctggtcatccagagagctttcagacgatatcttctcaagcgtatt
gttaagcgggcctctgccatgtacaaggagaagatacaaagtggaggcacgctccttgat
aaagaggttctcgtcatagacaaatttcccgagatctctacttcagacagaactgacatg
acaccctccacagcttctcccccatcatatgacagtgtcacaaaacctgaaaaaaacaaa
tatgaaaaagacaagagaaagaaggaggtgaaggagaaaaaaaagtacatggatgttggg
aagatttag
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