Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407234
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Entry
139407234 CDS
T10872
Name
(RefSeq) general transcription factor IIH subunit 5
KO
K10845
TFIIH basal transcription factor complex TTD-A subunit
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022
Basal transcription factors
ocla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139407234
09124 Replication and repair
03420 Nucleotide excision repair
139407234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139407234
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139407234
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
139407234
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
139407234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb5
Motif
Other DBs
NCBI-GeneID:
139407234
NCBI-ProteinID:
XP_071006926
LinkDB
All DBs
Position
4:complement(71716551..71717854)
Genome browser
AA seq
71 aa
AA seq
DB search
MVNVLKGVLVECDPAMKQFLLYLDETSALGKKFIIQDLDDTHVFILAEVVHILQERVGEL
MDQNSFPITQK
NT seq
216 nt
NT seq
+upstream
nt +downstream
nt
atggtcaacgtactaaagggtgttcttgtcgagtgtgaccctgccatgaagcagttccta
ctgtacctagatgagacatctgccctgggaaaaaagtttatcatccaggaccttgacgac
acccatgttttcattctggctgaggtggtccacatactccaggagagagttggggagctg
atggatcagaactccttccccatcactcagaaataa
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