Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407452
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Entry
139407452 CDS
T10872
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139407452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139407452
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139407452
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
139407452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
139407452
NCBI-ProteinID:
XP_071007350
LinkDB
All DBs
Position
1:43358270..43376355
Genome browser
AA seq
2424 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSAHLFTQLSKVLKLS
KVQEVIFGLALLNSCNADLRGFAAQFVKQKLPDLLRSYVDADLGINQEGGFQDIAIEVLH
LLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQARCPVVLAPLLYPEKRDILMDRILPD
SGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMARTHS
GLSDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYELD
HPGFMIRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFCFA
DYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHCPD
MLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHSM
AEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKWLT
DKIREHGVGGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETMATMLGCLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQMD
PLTAMGSLNLSSSATSHTQSMQGFPTPLGSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSL
SSQLGNTGPLGSGIGSGLGMPAVSSDPFGTRKMSTPGLNPTTFQQSKMKASDLSQVWPEA
NQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLF
EEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIA
ALDRFKNRLKDYPQYCQHLASIGHFLQFPLHLQECVQYIEYGQQSRDPPVKMQGSITTPG
SLALAQAQAQSQPPKAPQPGQPSTLVTTATATTTVAKTTTITRPTPGSFKKDVPPSINTT
NIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQY
LVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLK
NLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFR
PQNPWTMAIMNVLAELHTEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKLKSLE
EQLSAPKKEAKPPEEMIPIVSTGIQHFQTGMPLVGDFLPFAAAPSTPAPTTTCSATGPPT
PQFSYHDINVYALAGLAPHINININIPLLQAHPQLKQCVRQSIERAVQELVHPVVDRSIK
IAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFA
AALRAPTPQQREMMEEAAARVAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHAR
QEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGF
LAQPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAMNPQTQALRSLLEAVALARNSR
DGIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPLWCNKQITRC
LIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDE
RSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMH
SGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDD
LITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEA
TNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINF
QTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFK
YLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLIL
SAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFL
SELRSNLQVGGATLGPWKYLQHNDTSLEQVSNEPGNRYNIQLINALVLYVGTQAIAHIHN
KGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLF
AEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKL
FQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7275 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
acaaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcgtcacggc
cctgaggcggacaggcatttattacgctgtctcttctcccatgtggatttcagtggtgat
ggtaaaagcagtggcaaagattttcatcagtttctgatccaggagtgtgtttcactgatt
tcaaagcctaattttatttcaacactttgctacgccatcgacaatcctttgcactaccag
aagagtttgaagccgtcggcccacttgttcactcagttgagtaaagttctcaagctaagc
aaggttcaagaagtgatatttggccttgctttgctcaattcgtgcaacgcagaccttcgt
ggttttgccgcgcagttcgtcaaacaaaagctccctgatctcctccgctcgtacgtggac
gctgaccttggcattaaccaggaaggtggcttccaagatattgccatagaggtcctgcac
ctgctcctctcccatcttttgtttggccagaagggagccagtggcgtcggacaagagcag
attgacgctttcctcaagacactgtgcagagatttcccgcaggcgcgctgccctgtggtg
cttgcaccgctgctgtaccctgaaaaacgggacattctgatggacaggattctgccagac
tcgggagagttagccaagaccatgatggagagttctcttgcagagttcatgcaggaagtt
ggctatggcttttgtgcaagccttgatgaatgccgcaacataattctgcagtatggggtg
cgagaggttactgccagccaggtggccagggtcctggggatgatggctcgtacccactct
ggcttgtctgatggaatccccctacagtccatctctgctcccggcagtggcatttggagt
gatggaaaggacaagagtgatggttctcaggcccacacttggaatgtagaagttctgatt
gacgtggtcaaagaagttaaccccaatctgaacttcaaagaggtgacctacgagcttgat
caccctggctttatgatccgggacagtaagggacttcagatggtggtgtatgggatccag
aggggcctgggtatggaggtgttccctgtcgacctcatctaccggccctggaagcatgct
gagggacagctgtcattcattcagcactccctcatgagcccagatgtgttctgcttcgct
gactacccctgccacaccgtagccatcgacatactgaaggcgccacccgaggacgataac
agggagatagccacctggaagagcctggacctggtggagagcctcctgcgcctctctgag
gtgggccagtacgagcaggtgaagcagctcttcagtttccccatcaaacactgtcctgac
atgctggtgctggcgctgctgcagatcagcacctcttggcacaccctgcgccacgagcta
atctccaccctcatgcccatcttcctgggcaaccaccccaactccgccatcatcttgcac
tacgcatggcatggacagggccagtccccctctatccgccagctgatcatgcactcgatg
gcagagtggtacatgagaggagagcagtacgaccaggccaagctgtcccgcatcctggat
gtggcccaggacttgaagtctctttcaatgctgctaaatggtactccatttgcctttgtt
attgaccttgctgcacttgcatctcgccgtgaatacctcaaacttgacaaatggctgact
gacaaaatccgagagcacggggtgggtggcgagcccttcatccaggcatgtgtaacgttc
ctgaagaggcgctgtccctctattatgggtggtctggccccagagaaggaccagcccaaa
agcgcccagctccccccggaaacgatggctaccatgctgggctgtctgcagtcctgtgcc
gggagtgtgtctcaagagctctctgagactatcttgaccatggttgccaactgtagcaac
gtcatgaacaaagcccgccagccaccaccgggggtcatgccaaagggacgtgctcccagc
accagtagcctagacgccatttcccctgtgcaggtatcggtgtctcctctccagatggat
cccctgacagccatgggttcgctgaacctgagcagctctgccacctctcacacacagagc
atgcagggcttccctaccccgctgggctctgccttcagcaacccccagtccccagctaag
gccttccctccactgtccaaccccaaccccagcacaccgtttggggggattggaagcctc
tcttcacagctaggtaacacaggtccgctgggatcaggcattggttctggtcttggaatg
ccagcggtgagcagcgatccgtttgggacgaggaagatgagcacaccgggcctgaatccg
accacctttcagcagagtaagatgaaggcctctgacttatctcaggtgtggcccgaggct
aaccagcactttagtaaggagattgacgatgaggctaacagttacttccagcgcatctac
aaccaccctccgcaccccaccatgtctgtggatgaggtgctggagatgttgcagaggttc
aaggactccaccatcaagcgagagcgggaggtctttaactgtatgctgaggaacttgttt
gaggagtaccgcttcttcccccagtaccccgacaaggagctgcacatcaccgcctgcctg
ttcggggggatcattgagaagggtcttgtcacctacatggcccttggactggccctcaga
tatgtccttgaagccttaaggaagccatttggatccaaaatgtattactttggaatcgct
gctctagatagattcaaaaataggctgaaggactatccccaatattgtcagcacttggcc
tcgatcggccactttctgcaattcccccttcatttgcaagagtgcgtgcagtatatcgag
tatggccaacagtcacgggatcctccagtgaagatgcaaggatccatcaccacccctgga
agcctggcgttggctcaagctcaggcccagtctcagcctcccaaagccccccagcctgga
cagcccagcaccctggtcaccacagctaccgccaccaccactgtcgccaaaaccactacc
atcacccgacctacccctggcagcttcaagaaggatgtgccgccttccatcaacaccaca
aacattgacactctgctagtagcaacagaccaaactgagaggattgtggaacccccagag
aatgttcaagagaaaattgctttcatcttcaataacctgtcacaatccaacatgacacag
aaggtcgaggagttaaaggaaactgtgaaagaggagtttatgccctgggtttcccagtat
ctggtcatgaagagggtcagcatcgagcccaacttccacagcctatattccaactttcta
gacaccctgaagaaccctgagtttgtcaaaatggtcctgaatgaaacttacagaaacatc
aaggttctccttacctctgataaggcagctgcaaacttctctgatcgatccctactgaag
aatttgggccactggcttggcatgatcactctggctaaaaacaagcccatcctgtacacg
gatttggaggtgaaatccctcttgttggaagcctatgtcaaggggcagcaggagctactc
tatgtggtcccgtttgtggccaaagtcctggaatccagtttgcgtagcgtgatcttccga
cctcagaatccctggaccatggccatcatgaatgttctggcagagttgcatacggaacat
gatctaaagctgaacttaaagtttgagattgaggtgctgtgtaagaacttatcactggac
atcaacgacctgaagcctggcaccctgctgaaagacaaagacaagttgaagagtctggag
gagcagctctctgcaccaaagaaagaggccaagccccctgaagaaatgatccctattgtt
agcacaggtatccagcactttcaaactgggatgccccttgtcggagactttcttccattt
gcagctgcaccatccactcccgccccaaccaccacttgctcagctactgggccccctacc
ccgcagtttagctatcatgacatcaatgtgtacgcccttgcagggctagcccctcacatc
aatatcaacatcaacatccccttgcttcaagcccaccctcagctcaagcagtgtgtgaga
cagtccattgagcgggccgtgcaagagcttgtccaccccgtagtggaccgctccatcaag
atcgccatgaccacctgcgagcagatcgtcaggaaggactttgctctggactcggaggag
tcgcgcatgcgtgtggcagctcatcatatgatgcgcaacctgaccgccggcatggccatg
atcacctgccgggagcccctgctcatgagcatcgccactaacctgaagaacagctttgcc
gctgccctcagggcccccaccccccagcagagagagatgatggaggaagctgctgccagg
gttgcccaggacaactgtgagctggcctgctgcttcatccagaagactgctgtggagaag
gctggcccagagatggacaagaggctggcgacggagtttgagctgaggaagcatgcccgt
caggagggccgtcgctactgtgaccccgttgtgctgacctaccaggctgagcgcatgcca
gagcagatcagactcaaggttggaggcgtagaccccaaacagctggcggtgtatgaggag
tttgcccggaatgttccaggcttcctacccagcaacgacctgtctcagcccacaggattc
cttgcccagcccatgaagcaacaggcatgggccacggacgacgtggctcagatctatgac
aagtgcatggcagacctggagcagcacctccacgccatccctccagcgctggccatgaac
cctcagacccaggctttgcgcagcctattggaggctgtggccctagccaggaactcccgg
gacggcatcgccgctctgggcctgctgcagaaggctgtagagggtctgctggatgctacc
agtggtgccgatgctgacttgcttctgcggtacagagagtgccacctgctggtgctcaaa
gccctccaggacggccgggcatacgggccactgtggtgcaacaagcagattaccaggtgc
ctgattgagtgccgtgatgagtacaagtacaacgtggaggctgtggagttgctgatcaga
aaccacctggtcaacatgcagcagtacgacctgcacctggcacagtctatggagaatggg
ctgcattacatggcggtggcgtttgccatgcagctggtgaagctgctgttggtggacgag
cgcagtgtgagccacattaccgaggcagacttgttccacactatcgagactctgatgcga
accagcgcccactccagggccaacgcacctgaggggcttcctcagctgatggacgtggtc
cgttccaactacgaggccatgatcgaccgggcccacggaggacccaactttatgatgcac
tctggcatctcccaggcatccgagtacgacgacccgccgggcctgagggagaaggctgag
tacctgctgagggaatgggtcaacctgtaccactctgcagccgccggccgggacagcacc
aaggccttctctgcctttgtaggccagatgcaccagcagggcattctgaagaccgatgac
ctgatcactcgtttcttccggctgtgcacggagatgtgtgtggagatcagctaccgcgcc
caggccgagcagcagcacaaccccgcggccagcgccgccatcatcagggccaagtgttac
cataacctggatgcctttgtgcgcctcatcgccctgctggtcaagcactccggagaggcc
accaacactgtcaccaagatcaacctgctcaacaaggttttaggtattgtggttggagtg
ttgatccaggaccatgatgtgagacagactgagttccagcagttgccttaccaccgcatc
ttcatcatgctgttgctcgagctcaatgcccccgagcacgtgctggagaccatcaacttc
cagaccctcaccgccttctgcaacacttttcacatcctgaggcctaccaaagcccctggc
tttgtttacgcttggctggagttgatctctcaccgtatcttcatcgccaggatgctggct
cacaccccacagcagaagggttggcccatgtatgcccaacttctcattgatctgttcaag
tacctggcgcccttcctgaggaatgttgagcttaacaaacctatgcaaatcctctacaag
ggtaccctgcgtgtccttctggtcctactgcatgacttcccagagttcctgtgtgactac
cactacggcttctgcgacgtcatcccgcccaactgcatccagctccgcaacctgattctg
agtgccttcccacgcaacatgaggcttccagaccccttcactcccaatctgaaggttgac
atgctcagcgagatcaacatcgcgccgcgcatcctcacaaacttcaccggagtgatgccc
tctcagttcaagaaggatctggactcgtacctgaagacacgctcccccgtcaccttcctc
tctgagctccgcagcaatctgcaggtagggggcgccactctgggtccctggaagtatttg
cagcacaacgacacatctttagaacaggtgtcaaatgagccaggcaaccgttacaacatc
cagctgatcaatgctctggtgctgtatgtgggaacccaggccatcgcacacatccacaac
aagggcagcaccccctccatgagcaccatcactcactcagcccacatggacatcttccag
aacctggctgtggacctggatactgaggggcgttatctcttcctgaatgccatcgccaat
cagctgcgctacccaaacagccacacccattacttcagctgcaccatgctgtacctgttt
gctgaggccaacactgaggcaatccaggagcagattaccagggttcttctggagaggctg
attgtgaacaggcctcatccctggggactgctcatcaccttcatcgagctcatcaagaat
cccgccttcaagttctggagccacgactttgtacactgtgccccggagatcgagaagttg
ttccagtcagtggctcagtgctgcatggggcaaaagcaggctcagcaggtgatggagggc
actggtgccagttag
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integrated database retrieval system
