Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139407605
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Entry
139407605 CDS
T10872
Name
(RefSeq) cyclic nucleotide-gated channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
139407605
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139407605
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
139407605
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
139407605
NCBI-ProteinID:
XP_071007536
LinkDB
All DBs
Position
1:complement(43483691..43512819)
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AA seq
1330 aa
AA seq
DB search
MFNWVVKVVPQPPDAPGSLGQETANPTPASPQKVSKDEVKKEVNAKPAKQKEEDISEDNG
IQSQSGVMTWLSNGFTSALPQPTGSPNLSRSNSVSRSLQEVQREDERNGVIKWIAEGLSK
VVPQPDDKYREDIREEEEEETEVYNMKDVPDAEPLPHIPVVEIFSDDEEEDRVPQFPLKV
VNWIKNVIPQPVMLPAGYVEAQSKAQSKRSSLDKVLSPPPESLKGDEDSQNSNVVGWFVT
GLGLKMPQPVARSRDDVEVVQNISKQPKAVDLVLEEVVEADLKDLNQEVPSKAMQPEPPQ
PFKSAQTTQPSQTTQSQPAQPKQPVKPEEPEQTLPNVPESTTPSLEDAETQTGRWTPFIE
SIKREAEGVAMATMEERMTQERVDLVRMAEEVARHTAETAIRQMQEAQSIKLSIHSQEAI
LEEDEDPELHMLREEESEVEHTKNKMTECQVCPAKEQPVDAAKSAAQSERDFASPDIEPE
PQEELESQRASPSPPPSPEPDPVKRAEPEPKPKAQDAKVAPEPVTQQPQKAEGAEDRTAP
DTATKEEGETAEEGGCGASSRLSVHPAVNVEDVDSGGGGHRRHIRQILTPQDPNLKTLTV
PRVSKASRQSKVADKEKNLHSQSEDDDEEETETAVRAWPSQSSILCGDDGLKERPASSAS
QASYVVNERLQELVKMFKERTERAKEKLIDPDDSDDDSPTASPARAPTPPSAPPEEPEEE
AQPASPEREMEEQQPQSRLCCKVTPPRWIRALLQYRFPSSIDPFTNLVYVLWLFFVTLAW
NWNVWLIPMRWAFPYQTPSNIYLWLLADYLCDLIYILDIMVFQPRLQFVRSGDIVFDKKD
MRKNYMKTFRFKMDVISLVPLELFYFKTGINPLLRFPRLLKVMSFFEFNDRLEAILTKAY
VYRVIRTTSYLLYCLHCNACLFYWISAYEGLGSTKWVYDGKGNSYIRCYYFAVKTLITIG
GLPEPTTLFEIIFQLINYFVGVFAFSIMIGQMRDVVGAATSGQTYYRACMDNTVKYMASY
RIPKDVQNRVKTWYNYTWQSQGMLDEQELLVQLPDKMRLDIAVDVNYDIVSKVSLFQGCD
RQMIFDMLKSLRSVVYLPGDYVCKKGEVGREMYIIKAGEVQVVGGPDGKTVFVTLKSGSV
FGEISLLAVGGGNRRTANVVAHGFANLFILDKKDLNEILVHYPESQKLLRKKARNMLTKD
KKPQEPPKEPAQVIPPRTETPKLLKAALEMAHQKTGLKRTLAKIKENTNISSISLQPSMS
SSLTPLSPVSPVSSLDPERKSSIMSPTSDSSTLLRPASHCHRGETLSKEQDNVAEEEAGE
SGKRKEKRKP
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atgtttaactgggtggtgaaagtggttcctcagccccctgacgcccctggctctctggga
caggagacagccaatcccacacctgcatcaccacaaaaagtgtctaaagatgaagtcaaa
aaagaagtcaatgcaaaaccagccaaacagaaggaagaggatatttcagaggacaatggt
attcagagtcagagtggagtgatgacctggctctccaatggcttcaccagtgctctgcct
caaccaacaggcagccctaacctcagcagatccaactctgtatccaggtcactgcaggag
gtacaaagagaggatgaaaggaatggggtgattaagtggattgcagagggactgagcaag
gtggtgcctcagccggatgacaagtacagagaggatattcgagaggaggaggaggaagag
acagaggtttataacatgaaagatgtgccagacgcagagcccctcccacacatacctgtg
gtggagatcttttcagacgatgaggaagaggatcgggtaccacagttccccctcaaagtg
gttaactggattaagaatgttattcctcagcctgtgatgctccctgcaggttacgtagag
gcccagagtaaggctcagagcaagaggtcatctcttgacaaagttttgtcgccacctcct
gagtctctcaaaggtgacgaggactcacaaaactccaatgtcgtgggctggtttgtgacg
ggcctcggcctcaagatgccacagcctgtcgcgagatcaagagatgacgttgaagttgtg
cagaatatctctaaacaacccaaagcagtggatctggttctggaggaagtagtagaagca
gacttgaaggatctgaatcaggaagtgccatccaaggctatgcagccagaaccaccacag
ccttttaagtccgcacagacgacacagccatcacagacgactcagtcacagccggcacag
ccaaaacaaccagtgaaaccagaagagcctgaacagactcttccaaatgtgccagagtct
acaacaccatcgctggaggatgctgagactcagacgggcaggtggactcccttcatagag
agcatcaagagagaggctgagggcgtagctatggctaccatggaggaacggatgacccag
gagcgtgtggatttggtgcgaatggcggaggaggtggccagacacacagctgagacggcc
atcaggcagatgcaagaggcacaatcaatcaagctttccattcacagccaggaagccatt
ctggaagaagacgaggacccagagttacacatgctacgggaggaggagagtgaggtggag
cacactaagaataagatgacagagtgtcaggtgtgtcctgctaaggagcaaccagtggat
gcagcaaagagtgctgctcagtcagagcgcgactttgcatcacccgacattgaaccagag
ccccaggaagagctagagtcccaaagggcctctccatcccctcctcctagcccagaacca
gatccagtcaagagagcagagcctgaacctaaaccaaaggcccaggatgccaaagtagca
cctgaaccggtgacccaacaaccacagaaagcagagggggcagaggacagaactgcacct
gacaccgctaccaaggaggagggggagactgcagaggagggtggctgtggtgcgagctcc
aggctcagtgtgcaccctgctgtcaacgtggaggacgtggattcaggcggaggggggcat
cgtcgacacattcgccaaatcctcaccccccaggaccccaacctcaagaccctgaccgta
cccagagtgtccaaagccagccgccagagcaaagttgccgataaagaaaagaacctgcac
tctcagagtgaggatgatgatgaagaggagactgagaccgcagtgagggcgtggcctagc
cagtccagcatcctctgtggagacgatgggctaaaggagcggcctgcgtcgtccgctagc
caggccagctacgtggtgaacgagcgcctacaggagctggtcaagatgtttaaggagagg
acagagagggccaaagagaaactcatagacccagatgactctgatgatgacagtcccact
gcctcccctgcgagagctccaacacctccttctgcgcctccagaggagccggaggaggaa
gcacaaccagcctcccctgagagggagatggaggagcagcaaccccagtctagactgtgt
tgcaaggtgacgcctcctcgctggatcagagccctgcttcagtaccgcttcccctctagc
atcgaccccttcaccaatctggtctatgtgctgtggctatttttcgtcaccttggcgtgg
aactggaacgtgtggctgatcccgatgcgctgggccttcccctaccagacccctagtaac
atctacctgtggctgctagccgactacctgtgtgacctcatctacatcctggatatcatg
gtcttccagccccgcctgcagtttgtccgcagtggcgacatagtgtttgacaaaaaggac
atgcgaaagaattacatgaaaactttccggttcaagatggatgtgatcagtcttgtgcca
ctggaattgttctattttaaaactgggatcaacccactcctccgcttcccacggctacta
aaggtaatgtctttcttcgagttcaacgaccgtcttgaggccatcctgaccaaagcctac
gtttacagagtgatccggaccaccagctacctgctgtactgcctccactgtaacgcctgt
ctgttctactggatctctgcgtatgaaggtctgggctccacgaagtgggtctatgatgga
aagggcaacagttacatccgctgctactactttgctgtgaagactctgatcaccattggt
ggactgccggagcccacaacgctctttgaaatcatctttcagctcatcaactactttgta
ggagtgtttgccttttccatcatgataggacagatgagagatgtggttggtgcagccact
tccggacagacgtactacagagcatgcatggacaacactgtcaaatacatggcctcctac
cgtatccccaaagacgtgcaaaaccgggtcaaaacttggtacaactacacctggcagtcc
cagggcatgctggatgaacaggagcttctggtccagctcccagacaagatgaggctggac
atcgctgtggatgtcaactatgacattgtcagtaaagtctctctcttccagggttgcgac
agacagatgatctttgacatgttaaagagtctgaggtctgtcgtttacctcccgggggac
tatgtctgcaaaaagggcgaggttggacgggagatgtacatcatcaaggccggggaggta
caggtggtgggcgggccagacggaaagaccgtgtttgtcacactgaagtccgggtcagtg
tttggggaaatcagcttgcttgcagtgggtggaggaaacaggagaacagccaacgtagtg
gctcatggcttcgccaacctgttcatcctggacaagaaggacctcaatgagattttagtg
cattaccccgagtctcagaagctgctccgcaagaaggccaggaatatgctgacaaaagac
aagaagcctcaggagcctccgaaggagccggcccaggtgatccctcctcggacagagaca
cccaagctactcaaagctgctctggagatggctcatcagaaaacaggcctcaaaaggacc
cttgcaaagattaaggagaacaccaacatatccagtatttcgctacagccctcaatgtcc
tcctccctgacccccctatccccagtctctccagtctccagtctggacccagagcgcaag
tctagcatcatgtccccaacctcagacagctccacgttgctccgccccgcctcccattgt
cacagaggtgagacgctgtccaaggagcaggacaacgtggcggaagaagaggcaggagag
agtgggaagaggaaagaaaagagaaagccatga
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