Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410651
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Entry
139410651 CDS
T10872
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139410651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139410651
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
139410651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_19
TPR_16
TPR_14
TPR_8
TPR_17
TPR_11
TPR_9
TPR_12
TPR_CcmH_CycH
PPTA
ANAPC8
TPR_MalT
ANAPC3
TPR_Slam
TPR_EMC2
HAT_PRP39_N
RPN7
Fis1_TPR_C
Motif
Other DBs
NCBI-GeneID:
139410651
NCBI-ProteinID:
XP_071012114
LinkDB
All DBs
Position
6:complement(14937580..14974728)
Genome browser
AA seq
1566 aa
AA seq
DB search
MSNKEVKSALKNARDAIKNKEFKEALKHCKAALKLEKNNYNAWVFIGVAASELEQPDQAQ
TAYMKALELEPEQLLAWQGLANLYEKSDQTDFKAELPKVYQKLIELYESSDKTKCYEAIR
KLADIFHMEKDYLQVARVWRRLIQLKEGEGANKAELLQLWQQMTCLLSDSMEDHDNETQQ
HLIAAFEKAMVLSDNVPGEDHRKLSADYLKCLSQLSHEECKIKEACESILALYPSQTFPL
EILGAHHLKSGVCSEDAGRCFSRLLELDPDSGLGHLGLGIRALEEGKCDDSIKYLAQGLK
RMRSSLLGWCSLAQAQLKMHRYSDCATSCSQGLKLGGAGEEALGQKLMRLRLEALVRTGD
EHTADQALESLSQLSDANNDPVLVALKGRAYLQKGQVDQVLQVSTELLNSHPDLAEGLAL
RGLAHIAQGHHQLAEQSLLQAAAQSPACGEYYFLLGRLYWDMGEESRRDRSKAHTHLLKA
AKLDPYLGSVFCYLGHYYREVARDQGRARGCYKRAFELDSNDAESGAASVDLSMNEGDMD
TALAVLQSVIQRATPGSAKWAWMRRGLYHLKVGQHPQACADLQAALRADPQDWVCWECLG
EAYLNRRSFTSALKAFAKAQLLNPSSIYSLYQTAAIKQTLGKFKEAAAEYQQIIAQEDYV
PALKGLGECLLSLARCLMEDYRDGGAIDLIQQAIQYLFRAVELRPDLSCLWKLLGDACTS
VSTVAPNRARVVVPGPLAGLQPPDQGHLLNQGHTLRVGERCYGRALKLMPESSSLWYDLG
LNYYHQACLPPCLQEMEHNTLLLLLEKALQCVKKAIMLNSSNHSYWNALGVVAMSKGLEN
YALAQHSFIKSVQVEPNNVVAWTNLGALYLKKDSVELSHEAFKIAQSLEPLYVNCWIGQA
LIAEMVGSYDTMDLFRHTTELRTHTEGVKGYAYWVCATLLDKSNRDSELYRYNIVQMNAV
SAAQVALSKYTERIQTDPDAFVMLGFLNEHLQLKKQAVLAYQRSVELLQATPSVELLAFS
LGSYGRALCNTGQWEEAVHVYSSTSLEVLHDLAGLALAYCRAGLIPESISAYEKALMVTS
TEKEKAYILTSLALLQHRLGNMDSAKTLLFKCSMLKEPVPESLLCLCALGLVHGDSTLAS
AALTELLKQGRATGAAVEQRCLLTCTLLALQGNYSAVQREASRAVHSNPGNPSLWALLSR
LVPQYYPRKAKGGAVAGHVACLSSMTQGKRALLYSGVNQLACGRHSGEDRSRNALKTMQR
AVLLCPDDPAVWAGLMAACHTENTACSLSGSTPGRRGLEQVLMAVVSEKVRNVEEVEQPL
AQALEGWVLQQAVTGLTSGGQLEQAEALCSQVLSVSPEHPAVVLLLRQVQCEHLLLSSAG
TALPASVLEQLSSAVSANHTSVAAWHWLAEVYRTQGLLVQAVMAYRQSLQLASQLDLHSG
KMACLLRLALLALSPCMSKVPGDEWKELVLEATTEALKLGPSPVALLVQALLHFATKMSA
RETRRLLERLVYSQGYPETVACVARWYLLRHLHAKDDLELMDTLVDDAKASGDSRLLEFH
TRLASC
NT seq
4701 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaagaagttaaatcagctctaaaaaatgccagagatgccataaagaacaag
gaatttaaagaggcgctaaaacactgcaaggctgccctgaaactagagaagaacaattac
aatgcctgggtgttcattggtgtggccgcgagcgagctggagcaaccagaccaggcccag
acagcctacatgaaggctctggagctggagccagagcagctgctggcctggcagggatta
gcaaacctgtatgagaaaagtgaccagacggatttcaaagcggaactacccaaagtctac
cagaaactcattgagctttatgaaagttcagacaaaacaaaatgttatgaggcgatcaga
aaactggcagacatcttccatatggagaaggactatttacaggtggccagggtgtggcga
aggctgattcagctgaaggaaggagaaggtgctaacaaggcagagctgctgcagctatgg
caacagatgacctgccttctctcagacagcatggaggatcacgacaatgagactcagcag
cacttaattgcagcctttgagaaggccatggttctctctgacaatgtgcctggtgaggac
catcggaagctctcagctgactacctcaaatgcctttcacaactttcgcatgaggagtgt
aaaattaaagaggcctgtgagtccatattggccctctatccctcacaaacattccctttg
gagatcctcggtgcacatcatctcaagtcaggggtctgcagtgaggacgcgggccgttgt
ttctcccgtctcttggagttggacccagacagtggcttaggccatctgggtttgggcatc
agagctctggaggagggaaaatgtgacgactccattaagtatctggcccaaggactgaag
cgaatgcgctccagcttgttgggctggtgcagccttgctcaggcccagctgaaaatgcac
cgatattccgactgcgcaacatcctgctcccaaggtctgaagctgggtggggctggagaa
gaggcactgggacaaaagctcatgaggctgaggctagaggcccttgtgaggactggggat
gagcacactgcagaccaagccctggagagcctctcacagctttcagatgctaacaatgac
cctgtcctggtagccttaaaaggaagagcgtatttgcaaaaaggtcaagttgaccaagtg
ctccaggtgtccacggagctgctgaactctcaccctgacctggctgagggactggcgctg
aggggactggcacacattgcacagggacatcaccaactagcagaacagagcctcctgcag
gctgcagcccagagcccagcctgtggagagtactatttcctgttggggcggctgtactgg
gacatgggggaggagagtcgcagggacaggagcaaggcccacacccatctactgaaggct
gccaaactggatccgtacctgggctctgtgttctgctacctgggccattactaccgggag
gtggccagggaccagggtcgagccaggggctgctacaagagagcctttgagctggacagc
aacgacgcagagtccggggctgcctctgtggatctgagcatgaatgagggggacatggac
actgccctggctgtgctccagtcagtgatccagagagccacccctggttcagcaaaatgg
gcctggatgagacgaggcctttaccacctgaaggtgggccagcacccccaggcctgtgca
gatctgcaggctgctctgagggctgacccccaggactgggtgtgttgggaatgtctaggc
gaggcctaccttaaccgccggagcttcacgtcggccctgaaggcctttgccaaggcccag
ctgctcaacccctcctccatatacagcctctaccagactgctgccatcaaacagaccctg
ggcaagttcaaagaggctgctgcagagtaccagcagatcatagcccaggaggactatgtg
cctgcactcaaaggtcttggggagtgtctgctgtccttggccagatgcctgatggaggac
tatagagatggaggagccatagacctcatccagcaggccatccagtacctcttcagggct
gtagagctgcgtccagacctgtcctgtctgtggaagttactgggagacgcctgcacctca
gtcagcactgtggcccccaacagggcccgcgttgtggtgccaggacccctggccgggtta
caacccccagaccaaggccaccttctcaaccaaggacacaccctcagagtgggggagaga
tgctatgggcgtgctctgaagctgatgcctgagagctccagcctgtggtatgacctgggt
ctcaactactaccaccaggcctgtctgcctccctgccttcaggagatggagcacaacacc
ctgctactgctgctggagaaggccctgcagtgtgtgaagaaggccatcatgttgaacagt
agtaaccatagctactggaacgccctgggagtggtcgccatgagcaaaggacttgagaac
tatgcccttgcccaacacagcttcattaagtcagtgcaagtggaacccaataatgttgtt
gcttggacaaacctgggtgctttgtatctgaagaaagacagtgttgagctctcccatgag
gcctttaagatcgcccagtctttggaaccactgtatgtcaactgctggattggacaggcc
cttattgcagagatggtgggcagttatgataccatggacctgttcagacacaccacagag
ctcagaacacacacggagggggtaaagggctatgcttactgggtttgtgccactctgctg
gataagagtaacagggactctgagctctatcgctacaacatcgtccagatgaacgcggtg
tctgccgctcaggtggctttgagcaagtacacagagcggatccagacagaccctgatgcc
ttcgtcatgctgggtttcctcaacgagcacctgcagctaaagaagcaggcagtgctggct
taccagagatctgtggaattgctgcaggcgacgccttccgtggagttactggccttctcc
ctgggaagctatggccgggccctctgcaacacaggccaatgggaggaggcggtgcacgtt
tactcttccacatctctagaggtgctccacgacttggctggcctggcgctggcctactgc
agagcaggactcatcccagagagcatcagtgcctatgagaaggctctgatggtgacatct
actgagaaagagaaggcctacattctgacttctctggctctgctgcagcacagactgggg
aacatggactccgctaaaacactgctcttcaaatgctccatgctgaaggaacctgtgcca
gagtctctgctgtgcctgtgtgctctggggcttgtccatggggacagcaccttggccagc
gcggccctcactgagctgctgaagcagggcagggccactggggctgccgtggagcaacgc
tgcctgctcacctgcaccctgctggccctgcagggcaactacagcgcggtgcagcgagag
gcctccagggccgtccacagtaaccctggcaacccttccctgtgggccctgctttccaga
ctggtgccacagtattaccccaggaaggccaagggaggtgcagtggcaggccacgttgcg
tgtctctccagcatgacccaaggaaagagggcactgctgtacagtggagtgaaccagctg
gcatgtggcaggcactctggagaagaccgcagcaggaacgccctgaagaccatgcagagg
gctgtgctgctctgccccgatgacccggcggtgtgggcggggctaatggctgcttgtcac
acagagaacacagcctgctccctttctggctccacccctggcagacgaggcttggagcag
gtgctcatggccgtggtgtcagagaaagtacggaatgtggaggaggtggaacagcctctg
gcccaggctctggagggttgggtgctgcagcaggctgtgacaggactgacaagtggaggc
cagctagagcaggctgaggccctctgctctcaggtcctgagtgtgtctcctgagcacccc
gctgtagtcctgctgttgaggcaggtgcagtgtgaacacctcctcctgtctagtgccggt
actgccctgccagcttctgtcctggagcagctcagcagtgccgtctcagccaatcacacc
tcagtggccgcctggcactggctggcggaggtgtatcgtacccagggtctgctggtacag
gcagtaatggcctacagacaaagcctgcaactggcctcccagcttgacctccacagtggg
aaaatggcatgtcttctgcgcctagccctgctggccctcagcccctgcatgtcgaaagtc
cctggtgatgaatggaaggagctggttctggaggcgaccaccgaggctctgaagctgggc
ccctcccctgtagccctccttgtccaggccctgctacacttcgccaccaagatgtccgcc
agggagacgaggcgtttgttggagaggctggtgtactcccaaggttacccagagactgtg
gcgtgtgtggctcgctggtacctcctacgccacctgcatgccaaagacgacctggagctg
atggacaccctggtggatgacgccaaagccagtggagacagcagactgctggagttccac
acacggctcgcctcttgctga
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integrated database retrieval system
