Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139410948
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Entry
139410948 CDS
T10872
Name
(RefSeq) AP-1 complex subunit beta-1-like isoform X1
KO
K12392
AP-1 complex subunit beta-1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
139410948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139410948
Membrane trafficking [BR:
ocla04131
]
Endosome - Golgi transport
Others
AP-1 complex
139410948
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Adaptin_N
Cnd1
B2-adapt-app_C
HEAT_2
Alpha_adaptinC2
HEAT
PDS5
Cnd3
HEAT_GCN1
RTP1_C1
Arm
HEAT_EZ
XMAP215_CLASP_TOG
NELF-A_N
VPS15-like_hel
Arm_2
API5
FANCI_S3
Alpha_adaptin_C
Transposase_22
Motif
Other DBs
NCBI-GeneID:
139410948
NCBI-ProteinID:
XP_071012740
LinkDB
All DBs
Position
6:complement(30902474..30957378)
Genome browser
AA seq
1023 aa
AA seq
DB search
MEWANQLCENRQFGSKMTDSKYFTTTKKGEIFELKAELNSDKKEKKKEAVKKVIASMTVG
KDVSALFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNTFVKDCEDPNPLIRA
LAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQLVEDQGFLDT
LKDLISDSNPMVVANAVAALSEIAESHPNSNLLDLNPQSINKLLTALNECTEWGQIFILD
CLANYTPRDDRESQSICERVTPRLSHANSAVVLSAVKVLMKFMEMLPKDLDYYGTLLKKL
APPLVTLLSAEPELQYVALRNINLIVQKRPEILKHEMKVFFVKYNDPIYVKLEKLDIMIR
LASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVN
YVVQEAIVVIKDIFRKYPNKYESVIATLCENLDSLDEPEARAAMIWIVGEYAERIDNADE
LLESFLEGFHDESTQVQLQLLTAIVKLFLKKPTETQELVQQVLSLATQDSDNPDLRDRGY
IYWRLLSTDPVAAKEVVLAEKPLISEETDLIEPTLLEELICHIGTLASVYHKPPSAFVEG
SRGVMHKRLPARTESGEGTECPDVGNAAGGSAPEAAPSIIPSQGDLLGDLLNLDLAPPTT
TGPTPSTSGMQMGGMDLLGGGLDSLMDESEPPHVPLRTDPPQSPSPQPPSPVYTHTDYTY
TDYSHTDSPPDHSSTEHSPPAELGGDIGGSPAMGAGFGAAPAVMPASLNAPVGGGLGDLF
DLGGGVGMPMGAYIPPKTVWLPAMKAKGLEISGTFARRAGVIQMELVLTNKAMSVMTDFA
IQFNRNSFGLAPAGPLQVLTPLGPNQTIEVSLPLSTVGPVMKMDPLNNLQVAVKNNIDVF
YFSCQYPISMLFVEDGKMERQVFLATWKDIPNDNESQFQIQDCHLNSEAASNKLQGSNIF
TIAKRTVEGQDMLYMSIKLSNGIWVLAELKVQAGNPNYTISLKCRAPEVSQCVFQCYEAV
LKN
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atggagtgggctaatcaattatgcgagaaccgacaatttggatccaagatgacggactcc
aagtatttcaccactacaaagaaaggagagatctttgagctgaaagctgagctgaacagc
gataagaaggagaagaagaaggaggctgtgaagaaggtcattgcctccatgaccgttggg
aaagatgtcagtgccctgtttccagatgtggtgaactgcatgcagactgacaacctggag
ctgaagaagctagtctacctgtacctgatgaactatgccaagagccagccagacatggcc
atcatggctgtcaacaccttcgtcaaggactgtgaggaccctaaccccctgatccgggcc
ctggctgtgcgtactatgggctgcatccgtgtggacaagatcactgagtacctgtgtgag
cctctgagaaaatgtctgaaggacgaggacccctacgtgaggaagactgcagctgtgtgt
gtggccaagctccatgacatcaacgcccagctggtggaggaccagggcttcctagacacc
ctcaaggacctcatctctgactccaaccctatggtggttgcaaatgctgtggcagccctg
tctgagattgcagagtcccaccccaacagcaacctgctggacctgaacccccagtccatc
aacaagctgctgacggccctcaacgagtgcaccgagtggggtcagatcttcattctggac
tgcctggccaactacacccctcgcgatgaccgcgagtcccagagtatctgtgagcgggtg
accccccgtctgtcccatgccaactctgcggtggtgctgtcggcggtcaaggtgctgatg
aagttcatggagatgcttcctaaggacctggactactatggcaccctgctgaagaagctg
gccccgcccctggtcaccctgctgtctgcagagcccgagctgcagtacgtggccctgagg
aacatcaacctcatcgtacagaaacgcccagagattctgaagcatgagatgaaggtgttc
tttgtgaagtacaacgaccccatctacgtcaagctggagaaactggacatcatgatccgc
ctggcatctcaagctaacattgcccaggtgctggcagagctgaaggagtatgccactgag
gtggatgtggactttgtgcggaaggcagtccgagccatcggccgctgtgccatcaaagtg
gagcaatcagcggagcgctgtgtgagcaccctgctggacctcatccagaccaaggtcaac
tatgtggtgcaggaggccatcgtggtcatcaaggacatcttccgcaagtacccaaacaag
tatgagagtgtgatcgccacgctgtgtgagaacctggactccctggatgagccggaggcg
cgggcagccatgatctggatcgtaggagagtatgctgagaggatcgacaacgctgacgaa
ctgctggagagctttctggagggcttccacgacgagagcacccaggtgcaactgcagctg
ctgacagccatagtgaagctgttcctgaagaaacccactgagactcaggagctggtgcag
caggtgctgagcctggccacacaggactctgacaacccggacctgcgagaccgtggctac
atctactggcgtctgctctccactgaccctgtggctgccaaggaggtggtgctggccgag
aagcctctgatctcagaggagacagacttgattgagcccaccctgctggaggagctcatc
tgccacatcggcacgctggcctccgtctaccacaagcctcccagcgccttcgtggagggc
agccgcggtgtgatgcacaaaaggctccccgcacgcactgaatcaggagagggtacggaa
tgcccagatgtgggcaatgctgctgggggctctgcccctgaagctgccccctctatcatc
ccctcccagggagacctcctgggggaccttctcaacctggacctggcaccccccaccacc
actggtcccaccccctccacctccggcatgcagatggggggcatggatctccttggtggt
ggtctggacagcctgatggatgagtctgaaccgccacacgttcccctgcggacggaccct
ccacagtctccgtcacctcagcccccgtcgccagtgtacacccacactgactacacctac
actgactacagtcacactgacagcccccctgaccacagctctactgagcacagcccccct
gctgagcttggaggagatattggtgggagtcctgcgatgggggctggttttggcgcagct
cccgctgtgatgccagcctctctaaacgctcctgtgggaggcggccttggagacctcttt
gacctcggagggggggttggcatgccgatgggagcatacattccacccaagacagtgtgg
ctcccagccatgaaggctaaaggtctggagatctctgggacctttgcccggcgtgctgga
gtcatccagatggagctggtcctcaccaacaaggccatgagcgtcatgactgacttcgcc
atccaattcaacaggaacagttttggactggcccctgccggcccactccaggtcctcacc
cctctcggcccaaaccagaccattgaagtcagcctccccctcagcactgttgggccagtc
atgaagatggaccctctcaacaacctacaggtggctgtgaagaacaacattgacgtcttc
tacttcagctgccaataccccatcagcatgctgtttgtggaagatggaaagatggagcga
caggtgttcctggccacatggaaagacattcctaacgacaacgagtctcagttccagatc
caagactgtcatctcaactcagaggcagccagcaacaagctgcagggcagtaacatcttc
accatagccaagcgcacggtggagggccaggatatgctttacatgtccatcaaactgtcc
aatggcatctgggtgctggctgagctgaaggtacaggctggaaaccccaactacacgatc
tctctgaagtgcagagccccagaggtgtcccagtgtgtgttccagtgctacgaggcagtg
ctgaagaactga
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