Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411028
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Entry
139411028 CDS
T10872
Name
(RefSeq) ubiquitin recognition factor in ER-associated degradation protein 1
KO
K14016
ubiquitin fusion degradation protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
139411028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ocla03009
]
139411028
Ribosome biogenesis [BR:
ocla03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
139411028
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UFD1_N1
UFD1_N2
CDC48_2
Motif
Other DBs
NCBI-GeneID:
139411028
NCBI-ProteinID:
XP_071012916
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All DBs
Position
6:33547988..33551880
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AA seq
309 aa
AA seq
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MFSFNMFDHPIPRAFQNRFSTQYRCYSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLN
ITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLMVA
TYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAV
SIIECDMNVDFDAPLGYKEPERCYKAPEEPTEEEGDPSTWTDMDMRFRAFTGSGNRLDGK
KKGIEPSPVPIDPSDIKRGIPNYEYKVGRITFIRNSRPQPRKTTEDEDSEFIAFSGEGQS
LRKKGGRKP
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgttttccttcaacatgtttgatcacccgatcccacgggctttccaaaaccgcttctcc
actcaataccgctgctactctgtgtccatgctggcgggtcccaacgaccggtcggatgtc
gagaaaggaggaaaaattataatgccgccatcagcacttgatcaactaagcagacttaac
attacctaccccatgttgttcaaactgaccaacaagaactcagacagaatgacacactgt
ggtgtcttggagtttgtagcagatgagggtatttgttacctgccacactggatgatgcag
aatctcctgctggaggaagggggcctggtccaggtggagagtgttaacctcatggtggca
acatactccaagttccagcctcagagcccagacttcctggatatcactaaccccaaagca
gtgttggaaaatgccttgagaaactttgcctgcttaaccacaggagatgttattgcaatt
aactacaatgaaaagatctatgaactgcgagtgatggagactaagccagacaaggccgta
tctatcattgaatgtgatatgaatgtggactttgatgctccgttgggttacaaagaacca
gagagatgttacaaagcaccagaggagcccacagaagaggaaggagaccccagcacttgg
actgacatggacatgagattcagagccttcactggttcaggcaatcgtctggatggcaaa
aagaaaggcattgagcctagccccgtccccatcgatcccagtgacattaaaagagggatt
cctaactacgagtacaaggtcggaaggatcaccttcatcagaaactccaggcctcagccc
aggaaaacaacagaggatgaggattcagaattcattgccttttctggtgagggacagtca
ctacgcaagaaaggtggcagaaagccttga
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