Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139411069
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Entry
139411069 CDS
T10872
Name
(RefSeq) semaphorin-4C
KO
K06521
semaphorin 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
ocla04090
]
139411069
CD molecules [BR:
ocla04090
]
Proteins
139411069
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Motif
Pfam:
Sema
PSI
Ig_3
ig
Ig_2
Paramecium_SA
Motif
Other DBs
NCBI-GeneID:
139411069
NCBI-ProteinID:
XP_071012988
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Position
6:36303092..36364362
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AA seq
864 aa
AA seq
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MGEAKVLLLVLLIGWEKSLCLNWNPVPRKTVRYREVLDSMARFRALGVWNYTMATLAEHE
RVLYVGAREALFALDPNDISRQLRPQIEWPAPQEKKKECATKGKNNQTECFNYIRFLQSY
NHTHLYTCGTYAFQPKCTYINADHFSLNPGSLEDGKGKCPYDPAKGHTGLIVDKELYSAT
LNNFLGTEPVILRNLGQQHYSMKSEYLPAWLNEPDFVGSALVRESSGSKEGDDDKIYFFF
SERAVELDCDTELTVARVARVCKGDLGGTRTLQKKWTTFQKARLVCSLPERHVTFNNLRA
VFTLPGTDWRTTTFYGIFHAQWGDVDVSAVCQYQIGEVKKVFDGPYKEYRDASQRWGRYT
GTVPSPRPGACITSWHRENGYNSSLQLPDATLNFAKKHPLMEEKAQARPLLLTKGINFTR
LAVDRVSALDTRAYNMLFLGTADGWLQRVVILGSEAHVIEEIQLFDSPQPVDSLTISHTK
KYLYIGSRSEVLQLPLANCSRYQSQPDCLLSRDPYCAWDSEGRACVRIDLHRGSTSSLSQ
DLMLERFSRGKAKFDKPVAIPSPDNSRLRNVTVVVESDMVLPCQLVSNLAQPSWLLNDRE
LQLGDEEAGGARFDQTLKALVVPNVMPVHAGRYVCYSEEQGVKFQMERYQVSVVASSPVV
MAARAPDGSMGLFWVLVITLGAACLLLLVAALYLRRRLKLAIGKGTEMKPLESTLVYPIT
LPKEPPTFVPSKMPSDEDRFWETGANYYYSDGSLKIVPGHALCPSSQSHHHAPTASPSAI
PGQPIHSPSRLSLTNIRGSGSNGYIRLNLSSAGEERVSGGGSGGGGLGLSGGGNDYSSPF
KEELRRTLQQRSVLPDANPEESSV
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaggctaaggtcctgctgttggttcttctgattggttgggagaagtcgttatgt
ctcaactggaacccagtcccacgcaaaacggtcagataccgcgaggtactggacagcatg
gccaggttccgggctctaggtgtgtggaactacaccatggcgactctagcagaacacgag
agggttctgtatgtaggagctagagaggccctgttcgccctggaccctaacgacatcagc
agacagctacgacctcagattgaatggccagcaccacaggagaagaagaaagagtgtgcc
accaagggcaagaacaaccagacggagtgcttcaactacatccgcttcctgcagagctac
aaccacacccacctctacacctgtggaacctacgccttccagcccaagtgcacctacatc
aatgcagaccactttagtctcaaccctggctcccttgaggatggtaagggcaagtgtccc
tacgacccagccaagggccacacaggccttatagtggacaaggagctgtattcagccaca
ctgaacaacttcctgggtactgagcctgtgatcctgaggaacctgggacaacaacactac
agcatgaagagtgaatacctgccggcctggctcaacgaacctgactttgtgggctctgcc
ctggtgagggagagcagtggcagcaaggagggggacgatgacaagatctacttcttcttt
agtgagagagctgttgagctggactgtgacacggagctcactgtggccagggtggcccgc
gtctgtaagggtgatctggggggcactaggaccctgcagaagaagtggaccaccttccag
aaggccaggctggtgtgttctctccccgagcgacacgtcaccttcaacaaccttcgggca
gtcttcaccctgccaggcaccgactggcgcaccaccaccttctatggcatcttccacgcc
cagtggggcgatgtggatgtgtcagcagtgtgtcagtaccagataggggaggtgaagaag
gtgtttgatggcccttataaggagtacagagacgcgtcgcagagatgggggcgatacact
ggcactgtccccagcccacggcccggagcgtgtattacgagctggcatagggagaacggc
tacaacagctctcttcagctgccagacgccaccctcaactttgccaagaagcaccctctg
atggaggagaaggctcaggctcgccccctactgctcaccaagggcatcaacttcacccgc
ctggcagtggaccgggtcagcgccctggacacgcgggcatacaacatgctcttcttaggc
acagcggacggctggttacagagggtagtgatcctcggctcggaggcccatgtcattgaa
gagatacagctgtttgattctccccagccagtggacagcctgaccatctctcacaccaag
aagtacttgtacattggctcacgttcagaagtgctccagcttcccttggctaactgcagc
cgctatcagtcgcagccagactgccttctgtcccgggacccctactgtgcctgggacagt
gagggtcgcgcctgtgtccgcatcgacctccaccgcgggtctacctcctccctatcccag
gatctgatgctggagagattcagcaggggcaaagccaagtttgacaagcctgtggccatc
cccagccctgacaactctcgactgaggaatgtgacagtagtggtggaatcagacatggtg
ctgccctgccagctggtgtccaacctggcccagccctcctggctcctcaatgaccgggag
ctgcagctaggagacgaggaggccgggggtgcacgcttcgaccagactctgaaggctctg
gtggtccccaacgtgatgccggtgcacgcgggacgctacgtgtgctactccgaggagcag
ggggtcaagtttcagatggagcgctaccaggtgtcggtggtggccagctcccctgtggtc
atggcagcccgggcccctgacggcagcatgggtctgttctgggtgctggttatcaccctg
ggggccgcttgtctactactactggtggcagctctgtatctgaggaggcgtctgaagctg
gccataggtaaagggacggagatgaagcccctggaaagcaccttggtctaccccatcacc
ctgcccaaggagccacctaccttcgtgcccagcaagatgcccagcgacgaggaccgcttc
tgggagacgggcgccaactactactactcagacggctcgctgaagatcgttcccggccac
gccctgtgccccagcagccagtctcaccaccacgcccccacggcgtctcccagcgccatc
cccggccagcccatccactcccccagccggctcagcctcaccaacatcaggggctccggc
agcaacggctacatccgcctcaacctgagctcggccggggaggagagggttagcgggggt
ggttctggtggaggagggctggggctgagcgggggcgggaacgactactccagccccttc
aaggaggagctgcgtcggaccctgcagcagaggagcgtgctgcctgacgccaaccctgaa
gagtcgtctgtgtag
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