Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139413917
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Entry
139413917 CDS
T10872
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 3 isoform X1
KO
K05044
solute carrier family 6 (neurotransmitter transporter, GABA) member 11
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
139413917
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ocla02000
]
139413917
Transporters [BR:
ocla02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
139413917
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GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
139413917
NCBI-ProteinID:
XP_071017876
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Position
7:complement(83247924..83311201)
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AA seq
611 aa
AA seq
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MTGEKKVSVINGKPEDALDFESANDKKPVNERGHWNNKIEFVLSVAGEIIGLGNVWRFPY
LCYKNGGGAFFVPYIIFFICCGIPVFFLETALGQFTSEGGITCWRKCCPLFEGIGYATQV
IVAHLNVYYVVILSWAIFYLFNCFTTELPWASCDHYWNTENCVDFQRNGTNFTFNPNSTS
PVVEFWERRVLKISSGIEHIGKLRWELALCLALAWVICYFCIWKGPKSTGKVVYVTATFP
YVMLLVLLIRGVTLPGAWEGIKFYLYPDISRLSDPQVWVDAGTQIFFSYAICLGCLTALG
SYNSYDNNCYRDCIMLCCLNSGTSFVAGFAIFSVLGFMALEQGVPIEAVAESGPGLAFIA
YPKAVTMMPLSPLWACLFFMMLIFLGLDSQFVCVESLVTAVIDMYPETFRRGYRREMLIL
GLSICSFFLGLIMLTEGGMYVFQLFDSYAASGMCLLFVAIFESICIGWVYGSDRFYMNIE
DMIGYRPAIFIKWCWMLLTPGICAGIFLFFLIKYKPLKYNNVYIYPDWGYGIGWMMALSS
MVCIPLGIIIQLWKTPGTFSERMTFLTTPSPDLVMRGKLAGMSPFTIRPKPSKESKKAAK
IATITEKETHF
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgacaggcgagaagaaagtctcagtaatcaatggcaaaccagaggacgccctggacttc
gagtcagccaacgacaagaagccggtcaacgagaggggccactggaacaacaagattgag
tttgtcctgtcggtggccggagagatcatagggcttggaaacgtgtggcgtttcccctac
ctgtgttacaagaatggaggaggtgcgttcttcgtaccatatataatcttctttatatgt
tgtggcatcccggtgttcttcctggagacagctctgggacagttcaccagcgaaggaggc
atcacatgttggaggaaatgctgcccgctctttgaaggtattggctatgcgacccaggtg
atcgtggcccatttgaatgtgtattatgtggttatcctgtcctgggctatcttctacctg
ttcaactgcttcaccacggagctaccctgggcctcgtgtgatcactactggaacacagag
aactgtgtcgatttccagaggaacggcaccaatttcaccttcaaccccaactccacctcg
cctgttgtagagttctgggaacgtcgtgtcctcaagatctccagtgggattgaacacatc
gggaagctacgctgggaactggctctgtgtctggctctggcttgggtcatctgctacttc
tgcatatggaaagggcccaaatccaccggaaaggtggtgtatgtgactgctaccttcccc
tatgtcatgctgttggtcctgctgatccgaggggtgactctgccgggggcgtgggaagga
atcaagttctacctgtaccctgacatctcccgcctctcagacccacaggtgtgggtggat
gctgggactcagatcttcttctcctatgccatctgtttggggtgcctgacggccctgggg
agctacaacagctacgacaacaactgttacagggactgcatcatgctgtgctgtctgaat
agtgggaccagcttcgtggcgggcttcgccatcttctctgtgcttggcttcatggcccta
gaacagggcgtgcccatcgaggccgtggcagagtctggtccaggcttagccttcatagcc
taccctaaagctgtgaccatgatgcctctgtctcctctgtgggcttgtctcttcttcatg
atgctcattttcctggggctggacagccagtttgtgtgtgtagagagcctggtgacagcg
gtaatagacatgtacccagagactttcaggagaggctaccgtcgagaaatgctcatcctg
ggcttgtctatatgctccttcttcctggggctcatcatgttgacagagggtggaatgtac
gtgttccagctgtttgactcctacgcggccagcggaatgtgtctgctgtttgtggccatc
ttcgagtcaatatgtatcggctgggtatacggtagtgacaggttctatatgaacatcgag
gatatgattggataccgacctgccatcttcatcaaatggtgctggatgctactgacccca
ggcatctgtgctggtatcttcctgttcttcctgattaagtacaagcctctgaagtacaac
aacgtgtatatctacccagactggggctacggtataggctggatgatggccctgtcctcc
atggtctgcatacccctaggaatcatcatacagctctggaaaacacctggaaccttctca
gagaggatgactttcctgaccacccccagtccagatctggtgatgagaggtaaactggct
ggtatgagccccttcaccatcagacccaagcccagcaaagagtcaaagaaagctgcaaag
atcgctaccatcacagagaaggagacccatttctaa
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