Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139415022
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Entry
139415022 CDS
T10872
Name
(RefSeq) crooked neck-like protein 1
KO
K12869
crooked neck
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139415022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139415022
03036 Chromosome and associated proteins [BR:
ocla03036
]
139415022
Spliceosome [BR:
ocla03041
]
Complex B
Other components
Prp19-related factors
139415022
Complex C
139415022
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
139415022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
HAT
TPR_14
Suf
TPR_19
TPR_CcmH_CycH
TPR_16
U3_assoc_6
Mad3_BUB1_I
Motif
Other DBs
NCBI-GeneID:
139415022
NCBI-ProteinID:
XP_071018863
LinkDB
All DBs
Position
8:16655899..16662521
Genome browser
AA seq
786 aa
AA seq
DB search
MASTAAGKQRIPKVAKVKNKAPAEVQITAEQLLREAKERELELLPPPPKQKITDEEELND
YKLKKRKGFEDNIRKNRTVISNWIKYAQWEESLKEVQRARSIYERALDVDHRNIALWLKY
AEMEMKNRQVNHARNIWDRAITILPRVNQFWYKYSYMEEMLGNIAGCRQVFERWTEWEPE
EQAWHSYINFELRYKEVDKARSIYERFVIVHPDVKNWIKYARFEEKHGYIAHGRKVFERS
VEFFGEEHVDENLFVAFARFEEKQKEFERVRVIYKYALDRIPKQQAQELFKFYTVFEKKF
GDRRGIEDVIVSKRRFQYEEEVKASPHNYDAWFDYLRLVESDADPDTAREVYERAIANIP
PIQEKRHWRRYIYLWINYALYEELEVKDPERTRQVYLACLDLIPHKKFTFAKMWLLYGQF
EIRQKNLQAARQGLGTAIGKCPKNKLFKGYIELELQLREFDRCRKLYEKYLEFASENCTT
WIKFSELETILGDTERARAIFELAIGQPRLDMPEVLWKSYIDFEIEQEEYDNTRGLYKRL
LQRTQHVKVWISYAQYELSIDTSDRLQRCRGIFEEANKGLRSCEEKEERLMLLESWKEFE
QEFGSDTTRERVKKLLPEKVKKRRKLTAEDGSDAGWEEYYDYIFPEDAANQPNLKLLAMA
KMWKRQQQEEDDEEDDEEDEEENNGEVDRGKVEEVRGKEMEGEENGRGERGIDKEMTEDL
ASPSSEKPIVSEPVPEKVPKESTYDDRDDSDESSSGSSSSSSSSSSSDNDGGEKQPRKSN
KDSVKD
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggcatctactgcggcggggaaacagaggataccgaaagtagcgaaggtgaaaaacaaa
gctcctgcagaggtacaaatcacagctgagcagttgctcagggaggcaaaggagagggag
ctcgagcttctgccaccgccacccaagcaaaagatcactgatgaagaggagttgaacgat
tacaagttgaagaagaggaagggatttgaagacaacatcagaaagaaccgtactgttatc
agcaactggataaaatacgctcaatgggaggagagcctgaaagaagtccagagggctcgc
tctatttacgagcgtgccctggatgtagaccaccgaaacatagctctgtggctgaagtat
gccgagatggagatgaagaaccggcaggtgaaccacgcccgcaacatctgggacagagcc
atcaccatcttgccccgtgtcaaccagttctggtacaagtacagttacatggaagagatg
ctgggcaacatcgctggctgcagacaggtgtttgagcgctggacagagtgggaaccagag
gaacaagcctggcactcctacatcaactttgagctgcgctacaaggaagtcgacaaggcc
cgctccatctatgagagatttgtgattgtccaccctgatgtgaagaattggattaagtac
gcccgttttgaagagaagcatggctacatcgcccatggaaggaaggtgtttgaaagatca
gtggagttctttggcgaggagcatgttgatgagaacctctttgtggccttcgccagattt
gaagagaaacagaaagagtttgagagagttcgagtcatctacaaatacgccctggacaga
attcccaagcagcaggctcaggagcttttcaagttctacaccgtgtttgagaagaagttt
ggagaccggaggggaatcgaggacgtcatcgtcagcaagaggagatttcagtatgaagag
gaagtcaaggcaagcccacacaattatgacgcatggtttgattacctacgcctggtggag
agtgacgcggatcctgacactgccagggaggtctatgagagagccatcgccaatatccct
cctatacaggagaagagacactggagaagatacatttacctgtggataaactacgctcta
tatgaagaactggaggtcaaggacccagagagaacaaggcaggtgtacctggcatgtctg
gatctcatccctcacaaaaagttcacgtttgccaagatgtggctactctacggacagttt
gaaatccgccagaagaacctccaagctgctagacaaggcttgggcacagccattggtaaa
tgtccaaagaacaagctgtttaagggctacattgaactggagctgcagctcagagagttt
gaccgatgtaggaagctttatgagaagtacctggagtttgcctccgagaactgcaccact
tggatcaagttctctgagctggagaccatcctgggagacacagagagagcccgggccatc
ttcgagctggccatcggacagccacgactggacatgccagaggtgttgtggaagtcctac
atcgactttgaaatcgagcaggaagagtatgacaacaccagaggtctctacaagagactg
ttgcagcgcacacagcacgtcaaggtctggatcagctatgcccagtatgagctgtccata
gatacctctgaccggctgcagaggtgtagggggatctttgaggaggccaacaagggcctg
aggagctgtgaggagaaggaggagcgtctgatgctgctggagtcttggaaggagtttgag
caggagtttggctcagacacaaccagggaaagggtgaagaaactgctgccggagaaggtg
aagaagaggagaaagctcacggcagaggacgggtcagatgcagggtgggaggagtactac
gactacatcttccctgaggatgcagcgaaccagcccaacctcaagctgctcgccatggcc
aagatgtggaagaggcagcaacaagaagaagacgatgaagaagacgatgaagaggatgag
gaagaaaacaatggagaagtggataggggtaaagtggaggaagttaggggcaaagaaatg
gagggagaagaaaacggaagaggggagagaggaatagacaaagaaatgacagaagattta
gcatcaccatcatcagaaaagcctatagtcagtgagcctgtgcctgaaaaagtccccaag
gagagtacatacgatgacagagatgattctgatgaaagcagtagtggaagcagcagcagc
agcagcagcagtagtagtagtgacaatgatggtggtgagaaacagccaaggaagagcaat
aaggactcagtgaaagattag
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