Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139415185
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Entry
139415185 CDS
T10872
Name
(RefSeq) tumor necrosis factor receptor superfamily member 21
KO
K05157
tumor necrosis factor receptor superfamily member 21
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04060
Cytokine-cytokine receptor interaction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04060 Cytokine-cytokine receptor interaction
139415185
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04050 Cytokine receptors [BR:
ocla04050
]
139415185
04090 CD molecules [BR:
ocla04090
]
139415185
Cytokine receptors [BR:
ocla04050
]
Tumor necrosis factor receptors
TNF receptor superfamily
139415185
CD molecules [BR:
ocla04090
]
Proteins
139415185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNFR_c6
Death
CARD
DUF1451
Motif
Other DBs
NCBI-GeneID:
139415185
NCBI-ProteinID:
XP_071019182
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All DBs
Position
8:26280639..26323912
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AA seq
667 aa
AA seq
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MRSSQTFAQNWKMSVLCMSVALLYSVVGEASSQPLTPNPGTEIVALSARHYYHTDQSTGS
QLVCDKCPAGTFVSRHCNQTNVRECSRCGEGTFTRGENGVQQCHRCRRPCRAPLIEKFPC
TATMDRVCNCPPDTFAKGDTCTPHFLCPVGSGVKKRGSEVEDVSCKVCARGSFSDVVSSV
LRCRTHTDCLAQGLPLLTIGTRETDNICGPASPNSPTLPGPAQSAFIQEPSYSSAGPVHK
DAFILTAGSEVLELLLSTTGTLPSSGNSQDSTAAGSYEASPKDGEVLNLATTAGAQDPTQ
TPPHLKHSVPSEHHRTHPAANKRAMDGVEDGSEVGVGQGVQRSGYRPTRRGSPRPSTHTH
FDINEHLPWMIVLLLLLVLVVIVVCSVKRSSRVLKKGPVQDPSSIIEKAIQKKTCPPTQT
KEKWIYYSNGQGVDILKLVAAQIGSQWIDMYQSLANATEREVAAFSNGYQSDHDRAYAAL
QHWTIRDGDANLAKLINALHRHRRIDVVEKIRGVMEDNPQFDLNQLMTAVNVTPSHSPVH
KPLDSPRVLVEQSPVHRAKGFFPDESEPLLRCDSTSSKDSALSRTGSFITKEKKDTVLRQ
VRLDRCDLQPIFDDMLHILNPDELHIIEEIPMAEDKLDRLFEIAGVKSQEASQTLLDSVY
SHLPDLL
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgagaagtagccaaacatttgctcagaactggaaaatgtcagtgctctgtatgtctgtg
gcgctactgtacagtgtggttggtgaggcctctagccagcctctgacacccaaccctggc
actgagatagtggccctgtctgcccgccactactaccacacagaccaaagcacgggcagt
caactggtctgtgacaagtgccccgcaggaactttcgtgtccaggcactgcaaccagacc
aacgtgagggagtgcagccgctgtggcgagggcacattcacgcgcggagagaacggggtt
cagcaatgccaccgctgcaggaggccctgccgcgcccccctcattgagaagttcccctgc
acggccaccatggaccgggtctgcaactgccccccggacaccttcgccaagggggacacc
tgcactccccacttcctgtgccctgtgggctcaggggtgaagaaaaggggcagcgaggtg
gaggatgtgagctgtaaggtgtgcgcgcgagggagcttctcggatgtggtttccagtgta
ttgaggtgcaggacacacacagactgtctggcccagggtctgcccctactgacaataggc
accagagagacagacaacatctgtggacctgcttctcccaactcccccaccctcccggga
cctgcacagtctgccttcatccaggagccctcctattcctcagctggcccagtgcacaaa
gatgccttcatcctgacagcaggttctgaggtcttagagctcttactgagtaccacgggg
actctacccagctccggcaacagccaggactccaccgcagcaggctcctacgaggccagc
cccaaagatggagaggtgctgaacctggccactactgccggagcccaggaccccacacag
actccaccacacctcaagcactctgtgcccagtgagcaccaccgcacccacccagcagcc
aacaagcgggccatggacggcgtagaggacggatcggaggtaggggtaggtcagggtgtg
caaagatcagggtacaggcccacgcgaaggggctcccccaggcccagcactcatacacac
tttgacatcaacgagcacttgccctggatgatcgtgctgctgctgctgctggtgctggtg
gtgatcgtggtgtgcagcgtgaagaggagctccagagtgctgaagaagggaccggttcag
gaccccagcagcatcattgagaaagctatccagaagaagacctgccccccgacacagacc
aaggagaagtggatctactactccaacggacagggtgtggacatcctgaagttggtggca
gctcagattggcagccagtggatcgacatgtaccagtccctggccaatgccacagagcgc
gaggtggcagccttctccaatggctaccagtcggaccacgaccgggcatacgctgccctg
caacactggaccatccgcgacggggacgctaacctggccaagctcatcaacgccctgcac
cgccaccgccgcatcgacgtggtggagaaaatacggggcgtcatggaagacaatcctcag
tttgatctgaaccagctgatgaccgctgtgaatgtaaccccgagccacagtcctgtccac
aagcctttggattctcctagggtgctggtggagcagtctcctgtgcaccgggccaagggt
ttcttccccgatgaatcagagccccttctccgctgtgactccacctccagcaaagactcc
gccctcagcaggactggctcgttcattaccaaagagaagaaagacacggtgctacgtcag
gtccggctggaccggtgcgacctgcaacccatcttcgacgacatgctgcacatcctaaac
cctgacgagctgcacatcatcgaggagatccccatggccgaggacaaactggaccgcctc
tttgagattgccggggtcaagagccaggaggccagccagaccctgctggactcggtctac
agccacttgcctgacctactatag
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