Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139418155
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Entry
139418155 CDS
T10872
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139418155
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139418155
09142 Cell motility
04820 Cytoskeleton in muscle cells
139418155
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocla00535
]
139418155
Proteoglycans [BR:
ocla00535
]
Extracellular matrix (ECM) proteoglycans
Others
139418155
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
139418155
NCBI-ProteinID:
XP_071023492
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Position
1:86586383..86627768
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AA seq
523 aa
AA seq
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MQDLSAELCPGACPPGTPGHPGLPGMKGHKGVKGEGGEPGKQGHKGEEGDQGTTGDLGSQ
GPTGPQGIRGSTGMMGPKGGLGARGHDGDPGPQGVEGATGDQGQRGVMGESGPKGDEGSQ
GGRGITGLPGPKGKGGLSGVDGREGIPGLPGGKGTIGKAGSPGEVGLQGLPGLPGSPGSK
GTGGEKGSSGEAGLLGTIGSAGKTGEQGKAGGLGPIGPIGGPGDSGVQGPAGPPGKPGAR
GPKGDLGLPGVPGPPGLPGVKGERGEAGEGGPKGEQGGQGSEGTSGDKGDVGDQGEAGPK
GVVGNPGEPGNRGPEGSRGQPGIEGPAGTPGPRGMQGNRGAPGIRGSQGPAGKEPSDQHI
RQVCMRVMQEQLAQLAASLRRPESGAAGLPGKPGPPGPAGPPGDSGFPGQAGARGLPGLK
GPPGLLGLKGPKGELGDRGDRGPTVRGAKGQPGPPGLPGEPGKPGYGQEGRDGERGPPGV
PGQAGVPGPPGNAGPNGYCDPSSCNLRPGDIDTSIKGPEGTRN
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgcaggatttgagtgccgagctgtgccctggtgcctgtccacctgggacacctggtcat
cccggcctccctggcatgaagggtcacaaaggagtaaaaggggaaggaggagagcctggg
aaacaagggcacaagggtgaagagggtgaccagggaaccacaggggacctcggatcccag
ggcccaacgggtcctcagggaatcagaggctccactggaatgatggggcccaaaggtgga
ctgggagcacgaggacatgatggagatccaggtccccagggtgttgaaggagccactggt
gaccaaggccagaggggcgtgatgggcgagtctggtcctaaaggtgatgagggatctcaa
ggtggaagaggaatcacaggtcttcctgggcccaagggaaagggtggtttgtcaggagta
gatggccgtgaaggtattcctggattgccaggtggaaagggcaccattggcaaggctggg
tctccaggggaggtggggcttcagggacttcctggattacctggttctcctggctctaaa
ggaactggtggagagaagggtagctctggagaggcaggtcttcttggaacaataggatct
gctggtaaaacaggagagcaaggcaaagcaggaggtctaggacccattggacccattggc
ggaccgggagacagcggagtacaaggaccagccggtccaccgggcaaaccaggggccagg
ggacctaaaggggatcttggtcttcctggtgttcccggacccccaggcctccccggagtg
aagggagagaggggagaagctggcgagggaggacctaaaggggagcaggggggacaaggt
tctgagggaacctctggagacaaaggagatgttggtgaccaaggggaagctggacccaaa
ggagtggttggaaacccaggagagcctggtaacagagggccagagggtagcagagggcag
cctggcatcgagggcccagctggtactcctggaccacgtggcatgcagggcaacaggggc
gcaccaggaatcagggggtcacagggaccggcgggtaaagaaccaagcgatcaacacatc
agacaagtctgcatgagagttatgcaagagcagctagcccagttggctgccagtctaagg
aggccggagtctggagcagcgggcctgcctggtaagccagggcctcctggtcctgccgga
cccccaggggacagtggcttccctgggcaggctggagcaagaggactgcctggcctcaaa
ggacctccaggactcctaggactcaaaggacccaaaggtgaattgggcgacagaggagac
cgaggtcccacggtgcgaggggccaagggccagccaggacctcccggtctaccaggtgag
cccggaaagcctggttacggccaggagggacgtgacggcgagagaggacctccaggtgtt
cctggccaggctggtgtacctgggcctcctggtaatgctggccccaacggctactgcgac
ccatcgtcttgcaacctcagaccgggggacattgacaccagcatcaagggcccggaggga
actagaaactag
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