Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139423204
Help
Entry
139423204 CDS
T10872
Name
(RefSeq) zinc finger and BTB domain-containing protein 16-A isoform X1
KO
K10055
zinc finger and BTB domain-containing protein 16
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139423204
04121 Ubiquitin system [BR:
ocla04121
]
139423204
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys2His2 BTB-ZF factors
139423204
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
139423204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
BTB
zf-C2H2_6
zf-met
zf-C2H2_jaz
zf-C2H2_15
zf_UBZ
zf-C2H2_16
MIX
zf-C2H2_REST
zf-C2H2_2
Phage_zn_bind_3
Zn_ribbon_TiaS
zf-C2H2_11
Zn_SUZ12
Motif
Other DBs
NCBI-GeneID:
139423204
NCBI-ProteinID:
XP_071031039
LinkDB
All DBs
Position
12:complement(40673019..40796116)
Genome browser
AA seq
663 aa
AA seq
DB search
MDLTKMGMIHLQNPNHPTVLLQKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE
ILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKVEDLDDLLYAAEILEIEYLEEQCLK
ILETIQSSDDNDTEANMNDGGTEEEDERKGRQGGKNAKKHSMEGSFLSATQQASALDQSP
SVSTSFGLSTMSPTKAAVDSLMSIGQSLLQQGFGGEHLTHGNSHRQLMTEIKTEMMQVDE
GGGHESPRTMESSASSNGERSGELDKNRDGPGTPTRSSVITSARELHYVREDGMGDPQAD
GGQMGLEAMAGMTGMTEKQLTSLYSLPPNHKNEVMRSMPASMASSLHMSPALAMSMDFSA
YGGLLPQSFIQREFFNKLGELAAGMKPDGRNQHERCNVCGAELPDNEAVEQHRKLHSGMK
TYGCELCGKRFLDSLRLRMHLLSHSAGEKAIVCDQCGAQFQKEDALEAHRQIHTCLDMAI
FCLLCGKRFQTQPALQQHMEVHAGVRSYICSECNRTFPSHTALKRHLRSHTGDHPYECEF
CGSCFRDESTLKGHKRIHTGEKPYECNGCGKKFSLKHQLETHYRVHTGEKPFECKLCHQR
SRDYSAMIKHLRTHNGASPYQCTICLEYCPSLSAMQKHMKGHKPEDVPPDWRIEKTYLYL
CYV
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggatttgactaaaatgggtatgatccacctccagaaccccaaccaccccacggtcctg
ctgcagaaggccaaccagatgcgtctggcagggaccctctgcgacgtggtcatcatggtg
gacagccaggagttccatgctcacagaaccgtgttggcctgcaccagcaagatgtttgag
attctgtttcaccgtaacagccagcattacaccctggacttcctttcaccaaagaccttc
cagcagatcctggagtacgcctacactgccacactccaggccaaagtggaagacctggac
gacctgctgtacgcagcagagatcctagaaatcgaatacctggaggagcaatgtctcaag
atcctggagaccatccagtcctcggatgataatgacacggaggccaatatgaacgatggc
ggcacggaggaagaagacgagcgcaagggccggcaaggagggaagaacgctaagaagcat
tccatggaggggagcttcctttcagccacccagcaagcctctgccctggaccagagcccc
tccgtctccacatcctttgggctctccaccatgagcccaaccaaagctgccgtggacagc
ctgatgagcattggccagtccctcctgcagcagggcttcgggggagagcacctgactcac
ggcaactcccaccgccaactgatgaccgagatcaagacggagatgatgcaagtggatgaa
ggcggaggccacgagagccccagaaccatggagtccagcgcctccagcaatggtgagagg
agcggcgagttggacaagaaccgtgacggcccagggaccccgaccaggagcagcgtgatc
acaagtgcccgcgagctgcactacgtccgggaggatggcatgggcgacccccaagcagat
ggtggccaaatgggtctcgaagccatggctggcatgacaggcatgactgagaaacagctg
acctccctgtactctctgcctcccaatcataaaaacgaagttatgcgatccatgccggcc
tccatggcctcttctctccacatgtcccctgccctggccatgtccatggacttcagtgcc
tacgggggacttctgccccagagcttcatccagagggagttcttcaacaagctgggggag
ctggccgctggcatgaagccagatggcagaaaccagcacgaacgctgcaacgtgtgtggc
gcagagctaccagacaacgaagctgtagagcaacaccggaagctgcacagcggtatgaag
acctatggatgtgagctgtgtgggaaacgcttcctggacagcctacgccttaggatgcac
ttgctgtctcactcagctggtgagaaggccattgtctgtgaccagtgtggggcccagttc
cagaaggaggatgctctggaggctcacagacagatccacacatgcttggacatggccatc
ttctgtctgctgtgcgggaagcgtttccagacacagccggcgctacagcagcacatggag
gtccacgccggcgtgcgcagctacatctgcagcgagtgcaatcgcaccttccccagccac
accgctctcaaacgccacctgcgctcgcacacaggtgaccatccatatgagtgcgagttc
tgcgggagctgcttccgtgacgagagcactctgaagggccacaagcgcatccacaccggg
gaaaagccctacgaatgtaacggctgtgggaagaagttcagcctcaagcaccagctggag
acccactaccgtgtgcacacaggtgagaagccgtttgagtgcaaactgtgccaccagcga
tctagggactactcggccatgatcaaacacctgcgcacccacaacggagcgtcgccctac
caatgcaccatctgccttgagtactgccccagcctctcggccatgcagaagcacatgaag
ggccacaagcccgaagacgtccccccagactggaggatagagaagacctacctgtacctc
tgctatgtctga
DBGET
integrated database retrieval system
