KEGG   Oryctolagus cuniculus (rabbit): 100338745
Entry
100338745         CDS       T03373                                 
Name
(RefSeq) general transcription factor IIH subunit 2-like protein
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03022  Basal transcription factors
ocu03420  Nucleotide excision repair
ocu05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100338745
  09124 Replication and repair
   03420 Nucleotide excision repair
    100338745
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    100338745
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ocu03021]
    100338745
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100338745
Transcription machinery [BR:ocu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     100338745
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     100338745
SSDB
Motif
Pfam: Ssl1 VWA_2 C1_4 VWA HscB_4_cys IBR
Other DBs
NCBI-GeneID: 100338745
NCBI-ProteinID: XP_051709379
Ensembl: ENSOCUG00000015655
LinkDB
Position
11:complement(3822666..3876437)
AA seq 504 aa
MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
SGNPRKHITSLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPS
NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSSTEPGLTLGGYFCPQCRAKYCE
LPVECKICGLTLVSAPHLARSYHHLFPLDPFQEIPLEENKGERFCYGCQGELKDQHVYVC
SACQNVFCVDCDVFVHDSLHCCPGCIHKLPAPSVASFVTGYEEILESFSKCEFLQSKKTS
EEIIQYIQSYEGIVDMTLMAMTASLLMKTSGGIPLRTGPTSHLWGLRLWPERVFSTQAYA
SRLYGGVLKLDDTLYQDGKVFFCS
NT seq 1515 nt   +upstreamnt  +downstreamnt
atggatgaagagcctgaaagaaccaagcggtgggaaggaggctatgagagaacatgggag
attcttaaagaagatgaatctggatcactaaaagccacaatagaagacattcttttcaag
gcaaagaggaaaagagtatttgagcaccatggacaagtacgactgggaatgatgcgccac
ctttatgtggtggtagatggatcaagaacaatggaagaccaagatttaaagcctaataga
ctgacatgtactttaaagttattggaatactttgtggaggaatattttgatcaaaatcct
attagtcagattggaataattgttacaaagagtaaaagagctgaaaaactgactgaactc
tcaggaaacccaagaaaacatataacgtctctgaagaaagctgttgatatgacctgccat
ggagaaccatctctttataattccttaagtatggccatgcaaactctaaaacacatgcca
ggacatacaagtcgagaagtcctaatcatctttagcagccttacaacttgcgacccatca
aacatttatgatctaatcaagaccctaaaggcagctaaaattagagtgtctgttattgga
ctgtctgcagaggttcgagtgtgcactgtacttgctcgtgaaactggtggcacgtaccac
gttattttggatgaaagccattacaaggaactgctgacacatcatgttagcccacctcct
gccagctcgagttctgaatgctcacttattcggatgggatttccccagcacaccattgct
tctctgtctgatcaagatgcgaaaccctctttcagcatggcgcatttggacagcagtact
gagccagggctcacattaggaggttatttctgcccacagtgtcgggccaagtactgtgag
cttcctgttgagtgtaaaatctgtggtcttactctggtgtctgctccgcatttggctcgg
tcttaccatcatttatttcctttggatccttttcaagaaattcccctagaagaaaataaa
ggagaaagattttgctatggctgtcagggggaattgaaagaccaacatgtctatgtttgc
tctgcgtgccagaatgtcttctgtgtggactgtgatgttttcgttcatgactctctccac
tgttgtcctggctgtattcataaacttccagctccttcagtggccagcttcgtgacaggc
tatgaagagatattggagtctttcagcaaatgtgaatttcttcaaagtaagaagacttca
gaagaaattatccagtatattcaaagctacgagggaattgttgacatgacgcttatggca
atgacagcgtctttgctaatgaagacctccggcgggattcctttaagaactggccccaca
agtcacctgtgggggctgcggctctggcccgagcgggtcttttctacacaggcttacgca
tcacggctttatggtggagtcttgaaactggatgataccctgtatcaggatgggaaagtt
ttcttctgttcctag

KEGG   Oryctolagus cuniculus (rabbit): 100342919
Entry
100342919         CDS       T03373                                 
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03022  Basal transcription factors
ocu03420  Nucleotide excision repair
ocu05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100342919
  09124 Replication and repair
   03420 Nucleotide excision repair
    100342919
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    100342919
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ocu03021]
    100342919
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100342919
Transcription machinery [BR:ocu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     100342919
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     100342919
SSDB
Motif
Pfam: PH_TFIIH BSD GeBP-like_C
Other DBs
NCBI-GeneID: 100342919
NCBI-ProteinID: XP_002721410
Ensembl: ENSOCUG00000017633
UniProt: G1TE38
LinkDB
Position
Unknown
AA seq 545 aa
MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLNVNTTDSSSTSNHKQDVGISAAFLADVRPQTDG
CNGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSK
DLFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKPLDEGYGISSVPSASNSKSIKENSN
AAIIKRFNHHSAMVLAAGLRKQEAQNGEPSSIDGNSGDADCFQPAVKRAKLQESIEYEDL
GKNNSVKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPRLTQVLS
SGAASCTITALSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFPVNT
PFLEEKVIKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHTWQSRR
LMKKT
NT seq 1638 nt   +upstreamnt  +downstreamnt
atggcaacttcctctgaagaagtattgctgattgtaaagaaggtgcgacagaagaaacag
gatggagctctgtacctcatggcagaaagaattgcttgggcacctgaaggcaaagatagg
tttacaatcagccatatgtatgcggacattaaatgccagaaaatcagtccagaaggaaaa
gctaaaattcagcttcagctggtcctgcatgcaggggacacaacaaacttccatttttcc
aatgaaagcacagcagtgaaagagcgtgatgcagtaaaggaccttcttcagcagctgctg
cccaaatttaagaggaaagcaaataaagaactggaagagaaaaacagaatgctgcaagaa
gatcctgttttgtttcagctctataaagacctggttgtgagtcaagtgatcagtgctgag
gaattctgggccaatcgcttaaatgtgaacacaacagatagttcttccacatccaaccat
aagcaggacgttggcatttctgcagcatttctggctgatgtccggccccaaacagatggc
tgtaatggtttgagatacaatttaacttctgatatcattgagtccatttttaggacttac
ccagcagtaaaaatgaaatatgcagaaaatgttcctcacaacatgacagaaaaggaattc
tggacgcggtttttccagtcccattattttcatagggacaggctgaatacagggtcaaag
gatctctttgcagaatgtgccaaaatagatgaaaaaggattaaaaacaatggtttcatta
ggagtaaagaacccactactggatttgacagctttagaggataagccattagatgagggc
tatggcatttcctccgtgccgtctgcttccaattctaagtccataaaggagaatagtaat
gctgccatcatcaagaggttcaaccatcacagtgccatggttctggcagcaggtctcagg
aaacaagaagcacaaaatggtgagcccagcagcattgatggaaattccggagatgccgac
tgctttcagccagcagtcaaaagggcaaagttacaagaatccattgaatatgaagacttg
ggaaaaaataattctgtaaaaacaattgcactaaaccttaagaagtctgataggtattat
catggtccgactccaatccagtcactacagtatgcaacaagtcaggacattattaattct
tttcaaagtattaggcaagaaatggaagcttatacacctaggttaactcaggttctctca
agtggtgctgccagttgtaccattacagcattgtcacccggaggagcacttatgcaagga
gggacacagcaagccataaaccagatggtgccaaatgatattcagtctgaattgaaacac
ttgtatgtggctgttggagaacttctgcggcatttctggtcctgttttcctgttaataca
ccattcctagaagaaaaggtaataaaaatgaaaagtaatttggaacgattccaggttaca
aagctctgcccattccaagaaaaaattcggagacagtatttaagcacaaatttggtgagc
cacatagaagagatgctgcagacagcctacaacaagctccacacgtggcagtctcggcgt
ctaatgaagaaaacgtga

KEGG   Oryctolagus cuniculus (rabbit): 100347110
Entry
100347110         CDS       T03373                                 
Name
(RefSeq) general transcription factor IIH subunit 3 isoform X2
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03022  Basal transcription factors
ocu03420  Nucleotide excision repair
ocu05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100347110
  09124 Replication and repair
   03420 Nucleotide excision repair
    100347110
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    100347110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ocu03021]
    100347110
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100347110
Transcription machinery [BR:ocu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     100347110
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     100347110
SSDB
Motif
Pfam: Tfb4
Other DBs
NCBI-GeneID: 100347110
NCBI-ProteinID: XP_002723381
Ensembl: ENSOCUG00000003472
UniProt: G1SJS8
LinkDB
Position
Unknown
AA seq 309 aa
MVSDEDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVV
ASHIQESRFLYPGKNGRVGDFFGDPGNPSSEFNPSGSKDGKYELLTAANEVIVEEIRDLM
TKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMN
VIFAAQKQNILIDACVLDTDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS
QLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCSFSPICTTCETAFKISLPPMLKA
KKKKLKVSA
NT seq 930 nt   +upstreamnt  +downstreamnt
atggtgtccgatgaagatgaactgaatctcctggtcatcatagtggataccaacccgata
tggtggggaaagcaggcgctgaaggagtctcagtttactctatccaaatgcatcgatgcc
gtgatggtgctggggaactcccacttgttcatgaatcgctccaacaaactggccgtggtc
gccagtcacatccaggagagccgattcttatatcctgggaagaatggcagagttggagac
ttctttggagaccctggcaacccatcttctgaatttaacccctcaggaagtaaagacgga
aaatatgaactgctaacagcagcaaatgaagtgattgtggaagagattagagacctcatg
acaaaaagtgacataaagggtcagcatacagaaactctgctggcaggatccctggccaaa
gccctttgctatattcatagaatgaacaaggaggtgaaagataatcaggagatgaaatcg
agaatattggtgattaaggccgcggaagacagcgcgctgcagtatatgaacttcatgaat
gtcatcttcgcagcacagaagcagaatattttgattgatgcctgcgttttagacaccgat
tcaggactcctccaacaggcttgtgacatcactgggggactatacctgaaggtgcctcag
atgccgtccctcctgcagtacctgctgtgggtttttcttcccgatcaagatcagagatcg
cagttaatcctgccacccccagttcacgtggactacagggctgcttgcttctgtcatcga
aacctcattgaaatcggctacgtctgttctgtgtgtctgtcaatattctgcagcttcagc
cctatctgcaccacgtgcgagacagcctttaagatctctctgcctcccatgctgaaggcc
aagaagaagaaactgaaggtgtctgcgtga

KEGG   Oryctolagus cuniculus (rabbit): 127493056
Entry
127493056         CDS       T03373                                 
Name
(RefSeq) general transcription factor IIH subunit 4 isoform X1
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03022  Basal transcription factors
ocu03420  Nucleotide excision repair
ocu05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    127493056
  09124 Replication and repair
   03420 Nucleotide excision repair
    127493056
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    127493056
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ocu03021]
    127493056
   03400 DNA repair and recombination proteins [BR:ocu03400]
    127493056
Transcription machinery [BR:ocu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     127493056
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     127493056
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-GeneID: 127493056
NCBI-ProteinID: XP_051710835
LinkDB
Position
12:complement(132835086..132840539)
AA seq 463 aa
MESTPSRGGLNRVHLQCRNLQEFLGSLSPGVLDRLYGHPATCLAVFRELPSLAKNWVMRM
LFLEQPLPQAAVALWVKKEFSKAQEQSTGLLSGLRIWHTQLLPGGLQGLILNPVFRQNLR
VALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQLL
SQAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQ
LSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSSGVSGAGG
TVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGI
TAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFE
LLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQKHSS
NT seq 1392 nt   +upstreamnt  +downstreamnt
atggagagtaccccttctaggggtggactgaaccgggtgcatctacaatgcaggaatctg
caggaattcttagggagcctaagccctggggttttggatcgattgtatgggcaccctgcc
acctgtctggctgtcttcagagagctcccatctttggctaagaactgggtgatgcggatg
ctctttctggagcagcctttgccgcaagctgccgtagccctgtgggtgaagaaggagttc
agcaaggctcaggagcaaagtacggggctgctgagcggcctccggatctggcacacccag
ctgctccctggaggcctccagggcctcatcctcaaccccgtcttccgccagaacctccgc
gtcgcccttctcggtggggggaaggcctggtctgatgacacaagtcagctgggacccgac
aagcatgcccgggatgtcccctccctcgacaagtacgcagaggagcgatgggaggtggtc
ttgcacttcatggtgggctccccgagtgcggccgtcagccaggacttggcccagctcctc
agtcaggctgggctcatgaagagtgccgagccaggagagcccccctgcattacctctgcc
ggcttccagttcctgctgctggacacgcccgcccagctctggtactttatgctgcagtat
ctgcagaccgcccagagccggggcatggacctcgtggagattctctccttcctgttccag
ctcagcttctctactctgggcaaggattactctgtggagggtatgagtgactccctgctg
aacttcctgcaacatctgcgtgaatttggcctcgtcttccagagaaagaggaagtcccgg
cgctactaccccacgcgcctggccatcaatctctcatctggcgtctctggggctgggggc
actgtgcaccagccgggcttcattgttgtggaaaccaactaccggctgtatgcctacacg
gagtcggagctgcagatcgcgctgatcgccctcttctccgagatgctctatcgcttcccc
aacatggtggtggcgcaggtgacccgggagagcgtgcagcaggccattgccagcggcatc
acggcccagcagataatccacttcctaaggacaagggcccacccagtgatgctcaaacag
acccccgtgctgccccccaccatcacggaccagattcgcctgtgggagctggaaagggac
aggctgcggttcacggagggcgtcctgtacaaccagttcctgtcgcaagtggacttcgag
ctgctgctggcccacgcgcgggagctgggcgtgctggttttcgagaactcggccaagcgg
ctcatggtggtgaccccggccgggcacagcgacgtcaagcgcttctggaagcggcagaag
cacagctcctga

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