KEGG   Oryctolagus cuniculus (rabbit): 100339463
Entry
100339463         CDS       T03373                                 
Name
(RefSeq) S-phase kinase-associated protein 1
  KO
K03094  S-phase kinase-associated protein 1
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03083  Polycomb repressive complex
ocu04110  Cell cycle
ocu04114  Oocyte meiosis
ocu04120  Ubiquitin mediated proteolysis
ocu04141  Protein processing in endoplasmic reticulum
ocu04310  Wnt signaling pathway
ocu04350  TGF-beta signaling pathway
ocu04710  Circadian rhythm
ocu05132  Salmonella infection
ocu05170  Human immunodeficiency virus 1 infection
ocu05200  Pathways in cancer
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    100339463
   04120 Ubiquitin mediated proteolysis
    100339463
  09126 Chromosome
   03083 Polycomb repressive complex
    100339463
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    100339463
   04350 TGF-beta signaling pathway
    100339463
 09150 Organismal Systems
  09159 Environmental adaptation
   04710 Circadian rhythm
    100339463
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    100339463
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    100339463
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ocu04131]
    100339463
   04121 Ubiquitin system [BR:ocu04121]
    100339463
   03036 Chromosome and associated proteins [BR:ocu03036]
    100339463
Membrane trafficking [BR:ocu04131]
 Endosome - Lysosome transport
  Acidification regulators
   RAVE complex
    100339463
Ubiquitin system [BR:ocu04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Adaptor protein
     100339463
   Cul7 complex
     100339463
Chromosome and associated proteins [BR:ocu03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     100339463
  Centromeric chromatin formation proteins
   Kinetochore proteins
    CBF3 complex
     100339463
SSDB
Motif
Pfam: Skp1 Skp1_POZ
Other DBs
NCBI-GeneID: 100339463
NCBI-ProteinID: XP_002710256
Ensembl: ENSOCUG00000022505
UniProt: G1TTU6
LinkDB
Position
3:complement(16923513..16939733)
AA seq 163 aa
MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQ
WCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTC
KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEEK
NT seq 492 nt   +upstreamnt  +downstreamnt
atgccttcaataaagttgcagagttctgatggagagatttttgaagttgatgtagaaatt
gccaaacagtctgtgactatcaagaccatgttggaagatttggggatggatgatgaagga
gacgatgacccggttcctctaccaaatgttaatgcagcaatattaaaaaaggtcattcag
tggtgcacccaccacaaggatgaccctcctccccctgaagacgatgagaacaaagaaaag
cgaacggatgatatccctgtttgggaccaggaattcctgaaagttgaccaaggaacactt
tttgagcttattctggctgcaaactacttagacatcaaaggtttgctggacgttacgtgc
aagactgttgccaatatgatcaaggggaagactcctgaggagattcgcaagaccttcaac
attaagaatgactttactgaagaagaggaagcccaggtacgcaaagagaaccagtggtgt
gaagagaagtga

KEGG   Oryctolagus cuniculus (rabbit): 100340043
Entry
100340043         CDS       T03373                                 
Name
(RefSeq) S-phase kinase-associated protein 1-like
  KO
K03094  S-phase kinase-associated protein 1
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03083  Polycomb repressive complex
ocu04110  Cell cycle
ocu04114  Oocyte meiosis
ocu04120  Ubiquitin mediated proteolysis
ocu04141  Protein processing in endoplasmic reticulum
ocu04310  Wnt signaling pathway
ocu04350  TGF-beta signaling pathway
ocu04710  Circadian rhythm
ocu05132  Salmonella infection
ocu05170  Human immunodeficiency virus 1 infection
ocu05200  Pathways in cancer
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    100340043
   04120 Ubiquitin mediated proteolysis
    100340043
  09126 Chromosome
   03083 Polycomb repressive complex
    100340043
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    100340043
   04350 TGF-beta signaling pathway
    100340043
 09150 Organismal Systems
  09159 Environmental adaptation
   04710 Circadian rhythm
    100340043
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    100340043
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    100340043
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:ocu04131]
    100340043
   04121 Ubiquitin system [BR:ocu04121]
    100340043
   03036 Chromosome and associated proteins [BR:ocu03036]
    100340043
Membrane trafficking [BR:ocu04131]
 Endosome - Lysosome transport
  Acidification regulators
   RAVE complex
    100340043
Ubiquitin system [BR:ocu04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Adaptor protein
     100340043
   Cul7 complex
     100340043
Chromosome and associated proteins [BR:ocu03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     100340043
  Centromeric chromatin formation proteins
   Kinetochore proteins
    CBF3 complex
     100340043
SSDB
Motif
Pfam: Skp1 Skp1_POZ
Other DBs
NCBI-GeneID: 100340043
NCBI-ProteinID: XP_051678460
LinkDB
Position
1:complement(156737881..156738707)
AA seq 163 aa
MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNVAILKKVIQ
WCTHHKDDPPPPEDDENKEKRIDDIPVWDQGFLKVDQGTLFELILAANYSDIKGLLDVMC
KTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVSKENQWCEEE
NT seq 492 nt   +upstreamnt  +downstreamnt
atgccttcaataaagttgcagagttctgatggagagatttttgaagttgatgtagaaatt
gccaaacagtctgtgactatcaagaccatgttggaagatttggggatggatgatgaagga
gacgatgacccggttcctctaccaaatgttaatgtagcaatattaaaaaaggtcattcag
tggtgcacccaccacaaggatgaccctcctcctcctgaagacgatgagaacaaagaaaag
cgaatagatgatatccctgtttgggaccagggattcctgaaagttgaccaaggaacactt
tttgagcttattctggctgcaaactactcagacatcaaaggtttgctggacgttatgtgc
aagactgttgccaatatgatcaaggggaagactcctgaggagattcgcaagaccttcaac
attaagaatgactttactgaagaagaagaagcccaggtaagcaaagagaaccagtggtgt
gaagaggagtga

KEGG   Oryctolagus cuniculus (rabbit): 100345752
Entry
100345752         CDS       T03373                                 
Name
(RefSeq) cullin-1 isoform X1
  KO
K03347  cullin 1
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu04110  Cell cycle
ocu04114  Oocyte meiosis
ocu04120  Ubiquitin mediated proteolysis
ocu04141  Protein processing in endoplasmic reticulum
ocu04310  Wnt signaling pathway
ocu04340  Hedgehog signaling pathway
ocu04350  TGF-beta signaling pathway
ocu04710  Circadian rhythm
ocu05170  Human immunodeficiency virus 1 infection
ocu05200  Pathways in cancer
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    100345752
   04120 Ubiquitin mediated proteolysis
    100345752
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    100345752
   04350 TGF-beta signaling pathway
    100345752
 09150 Organismal Systems
  09159 Environmental adaptation
   04710 Circadian rhythm
    100345752
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    100345752
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    100345752
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ocu04121]
    100345752
Ubiquitin system [BR:ocu04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   SCF complex
    Cullin
     100345752
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 IntS11_C
Other DBs
NCBI-GeneID: 100345752
NCBI-ProteinID: XP_051704987
Ensembl: ENSOCUG00000002543
LinkDB
Position
7:170186713..170293537
AA seq 776 aa
MSSNRSQNPHGLKQIGLDQIWDDLRAGIQQVYTRQSMAKSRYMELYTHVYNYCTSVHQSN
QARGAGGPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYT
QQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVT
NAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADT
ERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHL
EIFHTEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAAL
NDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPE
LLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSA
SDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVL
SSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYT
LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDE
VELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMK
MRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA
NT seq 2331 nt   +upstreamnt  +downstreamnt
atgtcatccaacaggagtcagaatccccatggactgaagcagattggccttgaccagatc
tgggacgacctcagagctggaatccagcaagtgtataccagacaaagtatggctaagtcc
agatacatggaactctatactcatgtttataactactgcacgagcgtgcaccagtccaac
caagcccggggggctggtggcccgccttccaagtcaaaaaaggggcagacacctggagga
gctcagtttgttggcttggaattatacaaacgacttaaggaatttttgaagaattacttg
acaaatcttcttaaggatggagaagatttgatggatgagagtgtactgaaattctacact
caacaatgggaagattatcgattttcaagcaaagtgttgaatggaatttgtgcctacctc
aatagacattgggttcgccgtgaatgtgacgaaggacgaaaaggaatatatgaaatctat
tcacttgcattggtgacttggagagattgtctgttcaggccattgaataaacaggtaaca
aatgctgtcttaaaactgattgaaaaggaaagaaatggtgaaaccatcaatacaagactg
attagtggagttgtacagtcttatgtggaattggggctgaatgaagatgatgcatttgca
aagggtcctacgttaacagtgtataaagaatcctttgaatctcaatttttggctgacaca
gaaagattttataccagagagagtactgaattcttgcaacagaacccagttaccgaatat
atgaaaaaggcagaggcgcgcctgctcgaggagcagcggagagtccaggtctaccttcac
gaaagcacccaggacgagctggcgcgcaagtgtgagcaggtcctcatcgagaagcacttg
gaaatcttccacacggagtttcagaatttgctggatgctgacaaaaatgaagatctgggg
cgcatgtataaccttgtctccaggatccaggatggcctaggagaactgaaaaaactgctg
gagacacacatccacaatcagggtcttgcagcaattgagaagtgtggagaagctgctttg
aacgaccccaaaatgtatgtacagacagtgctagatgttcataaaaagtacaacgccctg
gtgatgtcagcattcaacaacgacgctggcttcgtggctgcgcttgacaaggcttgtggc
cgcttcataaacaacaatgcagtaaccaaaatggctcagtcatccagtaaatcccctgag
ctgctggctcgatactgtgactccttgttgaagaaaagttccaagaacccagaagaggct
gagctagaagacacgcttaatcaagtgatggttgtcttcaagtacatcgaggacaaagat
gtgtttcagaagttctacgcgaagatgctggccaagcgactggtgcatcagaacagtgca
agtgacgacgctgaagcaagcatgatctccaagttaaagcaagcttgtggctttgagtac
acctctaagctccagcggatgtttcaggacatcggtgtcagcaaggatctgaacgagcag
ttcaagaaacacctgacgaattcggagccactagacctggacttcagcatccaggtgctg
agctcggggtcctggcccttccagcagtcctgcacgttcgccttgccctcggagctggag
cggagctaccagcgcttcacggccttctacgccagccggcacagcggccggaagctgacg
tggctgtatcagctgtctaaaggagaactggtcaccaactgcttcaagaacaggtacacc
ttgcaggcatccacgttccagatggcgatcctgctgcagtacaacacggaagacgcctac
acggtccaacagctgactgacagcactcagattaaaatggacattttggcccaagtcctc
cagattttattgaagtcaaagttactggtcttggaagatgaaaatgcgaacgtcgatgaa
gtggaattgaagccggacaccttaataaaattgtatcttggctataaaaacaagaagtta
agggtgaacatcaacgtgcccatgaagacggagcagaagcaggagcaggagaccacgcac
aagaacattgaggaggaccgcaaactgctgatccaggcggccattgtgcgaatcatgaag
atgaggaaggtgctgaagcaccagcagctgctcggcgaggtcctcactcagctgtcgtcc
aggttcaagccgcgggtcccggtgatcaagaaatgcattgacattctgattgagaaggag
tatttggagcgcgtggacggcgagaaggacacctacagttacctggcctag

KEGG   Oryctolagus cuniculus (rabbit): 103352470
Entry
103352470         CDS       T03373                                 
Name
(RefSeq) E3 ubiquitin-protein ligase RBX1 isoform X1
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03420  Nucleotide excision repair
ocu04066  HIF-1 signaling pathway
ocu04110  Cell cycle
ocu04114  Oocyte meiosis
ocu04120  Ubiquitin mediated proteolysis
ocu04141  Protein processing in endoplasmic reticulum
ocu04310  Wnt signaling pathway
ocu04350  TGF-beta signaling pathway
ocu04710  Circadian rhythm
ocu05170  Human immunodeficiency virus 1 infection
ocu05200  Pathways in cancer
ocu05211  Renal cell carcinoma
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    103352470
   04120 Ubiquitin mediated proteolysis
    103352470
  09124 Replication and repair
   03420 Nucleotide excision repair
    103352470
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    103352470
   04350 TGF-beta signaling pathway
    103352470
   04066 HIF-1 signaling pathway
    103352470
 09150 Organismal Systems
  09159 Environmental adaptation
   04710 Circadian rhythm
    103352470
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    103352470
  09162 Cancer: specific types
   05211 Renal cell carcinoma
    103352470
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    103352470
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ocu04121]
    103352470
   03400 DNA repair and recombination proteins [BR:ocu03400]
    103352470
Enzymes [BR:ocu01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     103352470
Ubiquitin system [BR:ocu04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   103352470
  Multi subunit Ring-finger type E3
   SCF complex
    Ring finger protein
     103352470
   Cul2 complex
     103352470
   Cul3 complex
     103352470
   Cul4 complex
     103352470
   Cul7 complex
     103352470
   Cul8 complex
     103352470
   Cul9 complex
     103352470
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      103352470
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      103352470
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11
Other DBs
NCBI-GeneID: 103352470
NCBI-ProteinID: XP_051689974
LinkDB
Position
Unknown
AA seq 131 aa
MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
ASATSEECTVAWGVCNVWALERAFFHQASLFVVHFLTCPPVNYKLDRTMSFLLCLFSLLF
LRPYCIVSNKV
NT seq 396 nt   +upstreamnt  +downstreamnt
atggcggcagcgatggatgtggataccccgagcggcaccaacagcggcgcgggcaagaag
cgctttgaagtgaaaaagtggaatgcagtagccctctgggcctgggatattgtggttgat
aactgtgccatctgcaggaaccacattatggatctctgcatagagtgtcaagccaaccag
gcatctgctacgtcggaagagtgcaccgttgcgtggggcgtctgcaatgtatgggcacta
gaaagagcattcttccatcaagcttcattgtttgttgttcatttcctgacttgccctcca
gttaattataaattagatagaaccatgtcttttctgctttgtcttttcagtttgttgttc
ctgcggccatattgtattgtgtcaaataaagtctag

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