KEGG   Oryctolagus cuniculus (rabbit): 100339543
Entry
100339543         CDS       T03373                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 4
  KO
K03129  transcription initiation factor TFIID subunit 4
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03022  Basal transcription factors
ocu05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100339543
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    100339543
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ocu03021]
    100339543
   03036 Chromosome and associated proteins [BR:ocu03036]
    100339543
Transcription machinery [BR:ocu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     100339543
   Coactivators
    SAGA/TFTC/STAGA complex
     100339543
Chromosome and associated proteins [BR:ocu03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TFTC complex
     100339543
SSDB
Motif
Pfam: TAF4 TAFH TAF tRNA-synt_1c
Other DBs
NCBI-GeneID: 100339543
NCBI-ProteinID: XP_051686387
Ensembl: ENSOCUG00000022377
LinkDB
Position
Unknown
AA seq 729 aa
MILGPTMQGALPSPAGVPPPAPGTPTGLPKGAAGAVTQSLPRTPTAASGGIRATLTPTVL
APRLPQPPQNPTNIQNFQLPPGMVLVRSENGQLLMIPQQALAQMQAQAHAQAQPQSTMAP
RPATPTSAPPVQISTVQAPGTPLIARQVTPTTIIKQVSQAQTTVQSTTTLQRSPGVQPQL
VLGGAAQTTALGTAAAVQTGTPQRPVPGATATSTAATETMENVKKCKNFLSTLIKLASSG
KQSTETAANVKELVQNLLDGKIEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQLTPD
SAAFIQQSQQQPPPASQATTALTAVVLSSSVQRTAGKTAATVTSTLQPPVISLTQPTQVG
VGKQAQPAPLVIQQPPKPGALIRPPQVTLTQTPMVALRQPHSRIMLTTPQQIQLNQLQPV
PVVKPAVLPGTKALSAVSAQAAAAQKNKLKESGGGSFRDDDDINDVASMAGVNLSEESAR
ILATNSEIVGTLTRSCKDETFLLPAPLQRRILEIGKKHGITELHPDVVSYVSHATQQRLQ
NLVEKISETAQQKNFSYKDDDRYEQASDVRAQLKFFEQLDQIEKQRKDEQEREILMRAAK
SRSRQEDPEQLRLKQKAKEMQQQELAQLRQRDANLTALAAIGPRKKRRADWPGTAGAEVP
VSWAGVWPGTAGAEGSGPGSAVPGSSGVGTPRQFTRQRITRVNLRDLIFCLENERETSHS
LLLYKAFLK
NT seq 2190 nt   +upstreamnt  +downstreamnt
atgatcctggggccaactatgcaaggggcgctgcccagcccggccggcgtcccgccgccc
gcccccgggacccccacggggctgcccaaaggcgcggccggcgccgtgacccagagcctg
ccccgcacgcccacggccgccagtggcggcatccgggccaccctgacgcccaccgtgctg
gccccacgcctgccgcagccgcctcagaacccgaccaacatccagaacttccagctgccc
ccaggaatggtccttgtgcgcagcgagaacgggcagctgctaatgatccctcagcaggcc
ctggcccagatgcaggctcaggcccacgcccaggcccagcctcagagcaccatggcgccc
cgccctgcaacccccacaagtgcccctcctgtccagatctccaccgtacaggcacctggg
acacctctcattgcacggcaggtgacccccacgaccataattaagcaagtgtctcaggcc
cagacgacggtacagtccactacaaccctacagcgctcccctggcgtccagcctcagctc
gtcctggggggcgctgcccagacgactgccctggggacagcagctgccgttcaaacagga
acgcctcagcgacccgtgcccggcgcgaccgccacctccacagctgccacggaaaccatg
gaaaacgtgaagaaatgtaagaattttttgtctacattgataaaactggcttcgtctggc
aaacagtccacagagacagcagcgaacgtgaaagagctggtgcagaatttactggatgga
aaaatcgaagcagaagatttcactagcaggttataccgcgaactcaactcctcacctcaa
ccttaccttgtgcctttcctgaagaggagcttacccgccttgcgacagctgacgccggac
tccgcagccttcatccagcagagccagcagcagccgcctcccgcctcgcaggccaccacc
gcgctcacggccgtggttctgagcagctccgtgcagcgcacggctgggaagacggcggcc
accgtgaccagcaccctgcagccccccgtcatcagcctcacgcagcccacgcaggtcggc
gtgggcaagcaggcgcagcccgccccgctggtgatccagcagcccccgaagccaggagcc
ctgatccggcccccgcaggtgacgttgacgcagacgcccatggtcgccctgcggcagcct
cacagccggatcatgctgaccacgccccagcagatccagctgaaccagctgcagccagtc
cccgtggtgaaacccgccgtgttacctggaaccaaagctctctctgcggtctcggcccag
gcagctgctgctcagaaaaacaagctcaaggagtctgggggaggctccttccgggacgac
gatgacatcaacgatgttgcgtcgatggccggagtaaacctgtcggaagaaagtgcgaga
atactggccacgaactctgagatcgtggggacgctgacccggtcctgcaaggacgaaacc
ttccttctcccggcgcctttgcagaggagaatcttagaaatcggtaaaaaacacggcatc
acggagttgcaccccgatgtcgtgagctacgtatcccacgccacacagcagcggctacag
aacctcgtagaaaaaatatcggagacggcgcagcagaagaacttctcctacaaggacgac
gacaggtatgagcaggcgagcgacgtccgggcgcagctcaagttcttcgagcagctcgat
cagatcgagaagcagaggaaggacgagcaggagagggagatcctcatgcgggcagccaag
tctcgatccagacaggaagaccccgagcagttacggttgaaacagaaggcgaaagagatg
cagcagcaggagctggcgcagctgaggcagcgcgacgccaacctgacggcgctcgcggcc
atcgggcccaggaagaagaggagagcggactggccggggacggcgggagcagaggtaccc
gtgtcgtgggccggggtctggccggggacggcgggagcagagggctcgggcccgggctcg
gcggtgccaggcagctccggcgtcgggacccccagacagttcacgcggcaaagaatcacg
cgggtcaacctcagggacctcatattctgtttagaaaatgagcgcgagacaagccattcg
ctgctgctctacaaagcgttcctcaagtga

KEGG   Oryctolagus cuniculus (rabbit): 100349838
Entry
100349838         CDS       T03373                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 4B isoform X1
  KO
K03129  transcription initiation factor TFIID subunit 4
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03022  Basal transcription factors
ocu05016  Huntington disease
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    100349838
 09160 Human Diseases
  09164 Neurodegenerative disease
   05016 Huntington disease
    100349838
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ocu03021]
    100349838
   03036 Chromosome and associated proteins [BR:ocu03036]
    100349838
Transcription machinery [BR:ocu03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     100349838
   Coactivators
    SAGA/TFTC/STAGA complex
     100349838
Chromosome and associated proteins [BR:ocu03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TFTC complex
     100349838
SSDB
Motif
Pfam: TAF4 TAFH
Other DBs
NCBI-GeneID: 100349838
NCBI-ProteinID: XP_002713657
Ensembl: ENSOCUG00000005480
LinkDB
Position
9:complement(48560450..48696115)
AA seq 856 aa
MPAGLTEPAGAAPPAAVSASGAVTMAPAGALPVRVESAPLGAVTKAPVSVCVEPSASQPL
RSPVGTLVTKVAPVSALPKLSGGPRLPAPQIVTVKAPNTTTIQLPANLQLPPGTVLIKSN
SGQLMLVSPQQAVTRAETTSNVTSRPAIPTNTQTVKICTVPNSSSQLIKKVAVAPVKKLA
QTGTTVVTTVPKPSSVQSVAAPTSVVTGTPVKPLNTVTTLKPSSLGASSTSSNEHNLKAE
SPAAAQTNLSPTMLENVKKCKNFLAMLIKLACSGSQSPEMGQNVQKLVEQLLDAKIEAEE
FTKKLYVELKSSPQPHLVPFLKKSVVALRQLLPNSQSFIQQCVQQTSGEVVIATSTTTVT
ATPVVTTTVSLIQPEKPIIVSAAATPRTVSVQTLNPVTTGPVRAKTGVVTLHSVGPAAVP
GGTTAGTVLLQTSKPLVTSVPNTVTTVSLQPEKPVASGAAVTLALPSVTFRETSAAALCL
PSVKPVVTTAGTTSDKPVIAAPVQIKLAQSSPVLSQPAGIPQAVKVKQVVVQQPSGGVGK
QVTTLSHSSTLSIQKSGQKKMPVNTVIPTTSILKQITLPGNKILSLQASPIQKHKIKENG
TTCFRDEDDINDVTSMAGVNLHEENACILATNSELVGTLIQSCKDEPFLFIGALQKRILD
IGKKHDITELNSDAVNLISHATQERLRGLLEKLTTIARHRMTTYKASENYILSSDTRSQL
KFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKAKELQQLELAQIQHRDA
NLTALAAIGPRKKRPLESASEGLKDNLLASGTSSLTATKQLLRPRITRICLRDLIFCMEQ
EREMKYSRALYLALLK
NT seq 2571 nt   +upstreamnt  +downstreamnt
atgcccgcgggcctcactgaaccggcgggcgccgctcccccagctgctgtgagcgcatcg
ggggccgtgaccatggcccctgctggggctctcccggttcgggtggagagcgctcccctg
ggcgccgtgactaaggcgcctgttagtgtctgcgtggagccctcggcgtcccagcccctg
cggtcccccgtggggaccctggtgaccaaagtggctcctgtcagtgctcttcctaaactt
agcggcggccctaggctgcctgcgcctcagatagtgaccgtgaaagcccccaacaccacg
accatccagttgccggctaatttgcagcttcctccaggaacagttttgatcaaaagtaac
agtggtcagttaatgttggtatctcctcagcaagccgtgacaagagctgagaccacaagt
aatgtaacttcaaggccagcaatacccacgaatactcaaacagtcaaaatctgtaccgtg
ccgaattctagctcacaattaatcaagaaagtagcagtggcacctgttaaaaaactggca
caaacaggaactactgtggtaaccactgttccgaagccttcctcagtacaatctgtggct
gcgccaaccagtgttgtcacaggtactcctgtaaagccgttgaacacagtaactactctg
aaaccttcaagtttgggagcatcatccacttcctcaaatgagcacaatctcaaagcagag
agtccagcagctgctcagaccaatctttctccaacaatgctagaaaatgtgaagaaatgt
aagaacttccttgcaatgttaataaaactagcatgtagcggatcacaatccccagaaatg
gggcagaatgtgcagaagctggtggaacaacttttggatgcaaaaattgaagcagaagaa
tttaccaagaaactgtatgttgaactcaagtcttcacctcagcctcacctagttcctttt
cttaagaaaagtgtggttgccttacgacagcttctgcctaactcccagagcttcattcag
cagtgtgttcagcagacctctggtgaggtagtcattgccaccagtaccacaacagtaaca
gctactcctgtagtgacaactacagtttccttaattcagcctgaaaagcccatcattgtt
tctgcagcagcaacacccagaactgtgtctgtgcagactctaaatccagtcaccactggt
ccagtgagagcaaaaactggagttgtgactcttcactctgtgggtccagctgctgtacca
ggaggcacaacagctggaactgttttgcttcagacttcaaaaccacttgtgacatctgta
ccaaatacagttacaacagtctcacttcagcctgagaaaccggttgcctctggagcagca
gtaaccctggcccttccttcggtaacttttcgagaaacttcagctgcagctctttgtctc
ccatctgtgaagcctgtagttactactgctggaaccacatctgacaagcctgtcattgca
gctccagtccaaatcaaacttgcccagtccagtcctgtcctttcacagccagctgggatt
ccacaggcagtcaaagtcaagcaagtagtagtccagcagccttcaggaggcgttggaaaa
caagtgaccacactttcccattcctcaacattgtctattcagaaatctggacagaagaag
atgccagtgaacactgtaatacctaccacttccattctaaagcaaattactctgcctgga
aataaaattctgtcgcttcaggcatctcctattcagaaacataaaataaaagagaatgga
acaacatgcttcagagatgaagatgacatcaatgatgtgacttccatggcaggggtcaac
cttcatgaagaaaatgcctgcatcttagcaacaaactctgaactggttggcacactcatt
cagtcatgtaaagatgaaccatttcttttcattggagctcttcaaaagagaattttagat
attggtaaaaagcatgatattacagaacttaactctgatgctgtgaacttgatctcccat
gcaacacaagagagattacgaggccttctagaaaaattgaccacaattgctcggcatcga
atgactacttacaaggcaagtgaaaattacatcctgtctagtgataccaggtcacagctt
aaatttctcgaaaagctggatcaattggagaaacagagaaaggatttagaagaaagagaa
atgttacttaaggcagccaagagtcgttccaataaagaagacccggaacagctgcgatta
aagcagaaagccaaagagttgcagcaattggaactcgcacagatacaacacagagacgct
aatcttacagctcttgcagctattggaccgaggaagaagagaccactagagtctgcaagt
gagggcttaaaagacaaccttcttgcttctgggacatccagcctgacagccaccaaacag
ttgcttcgtccgagaatcacaagaatctgcctcagggacttgatattttgtatggaacag
gaaagggagatgaagtattcccgagctctatacctggcccttctgaagtga

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