KEGG   Oryctolagus cuniculus (rabbit): 100341460
Entry
100341460         CDS       T03373                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
  KO
K07466  replication factor A1
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03030  DNA replication
ocu03420  Nucleotide excision repair
ocu03430  Mismatch repair
ocu03440  Homologous recombination
ocu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100341460
   03420 Nucleotide excision repair
    100341460
   03430 Mismatch repair
    100341460
   03440 Homologous recombination
    100341460
   03460 Fanconi anemia pathway
    100341460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ocu03000]
    100341460
   03032 DNA replication proteins [BR:ocu03032]
    100341460
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100341460
Transcription factors [BR:ocu03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    100341460
DNA replication proteins [BR:ocu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    100341460
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     100341460
   MMR (mismatch excision repair)
     100341460
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     100341460
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon DUF223 Ubiquitin_At1g33420 IBR
Other DBs
NCBI-GeneID: 100341460
NCBI-ProteinID: XP_008269149
Ensembl: ENSOCUG00000001504
UniProt: G1SFK3
LinkDB
Position
19:complement(13855130..13915984)
AA seq 616 aa
MVGHLSEGAIAAILQQGDTSIQPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNPLVEEERLSSNCICQVNRFIVNTLKDGRRVVILMEVEVLKSAEAVGMKIGNPVPYNE
GHGQQQALPPPVTAASAPASKPQQQNGSAGMGPPVSKSFGASKAFGKSGGSSLLNTAGGT
QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QVDKFFPLIEVNKVYYFSKGTLKIANKQFTAVKNDYEMTFVNETSVMPCEDGHHLPTVQF
AFTGIDALENKPKDSLVDIIGICKSYEDATKITVKSNNREVAKRNIYLMDTSGKVVTATL
WGEDADRFDGSRQPVLAIKGARVSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQ
ALDGVSISDLKSGGMGGSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDSEFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL
GQNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPVDYR
EHARRLIMNIRRNAAL
NT seq 1851 nt   +upstreamnt  +downstreamnt
atggtcggccacctgagtgagggggccattgcggccatattgcagcagggagatacatct
attcaacccatcctgcaggtcattaacatccgtcccattacgacagggaatagcccaccc
cgttatcgactgctcatgagtgatggactgaacactctgtcctctttcatgttggcaaca
cagttgaaccctcttgttgaggaagaacgattgtccagcaactgtatttgccaggtgaac
cgatttattgttaacacgctgaaagatggaaggagagtagtcattttgatggaagtagaa
gttctgaagtcagctgaagcggtcggaatgaagatcggcaatccggtgccctacaatgaa
ggacatgggcagcagcaggcacttcctcctccagtcacagcagccagtgccccggccagc
aagccccagcaacagaacgggagcgcgggcatgggtccacccgtatctaagtcttttggt
gcctcaaaggcatttggaaaatctggaggttccagtctgttgaacactgctgggggaaca
cagtccaaagtggtacccattgccagcctcaccccttaccagtccaagtggactatttgt
gctcgtgttaccaacaaaagccagatccgcacctggagcaattccagaggggaagggaag
cttttctccatagagctggttgatgaaagcggtgaaatcagagctactgctttcaatgag
caggtggacaagttctttccccttattgaagtgaacaaggtgtattatttctcaaaaggc
accctgaagatagccaacaaacaattcacagctgttaaaaacgactatgagatgaccttc
gttaacgagacgagtgtgatgccctgtgaagacgggcaccatctgcccacggtccagttt
gctttcaccgggatcgacgccctagagaataagcccaaggactcacttgtagacataatt
gggatctgcaagagctatgaagatgccacaaaaatcacagtgaaatctaacaacagagaa
gtcgctaagagaaatatctatctgatggacacgtcggggaaggtggtgactgccactctg
tggggagaagatgctgatagatttgatggctctagacagcctgtgctagctatcaaagga
gccagagtttctgattttggtgggcggagcctgtctgtcctgtcttcaagcactgtcatt
gtgaatcctgacatcccagaggcctacaagcttcgtggctggttcgactcggaagggcaa
gccttggatggtgtttccatctctgacctcaagagcggggggatggggggcagcaacacc
aactggaagaccttatacgaagttaaatcggagaacctgggccaaggtgacaaggccgac
tactttagctccgtggcaaccgtggtgtatcttcgcaaagagaactgtatgtaccaggcc
tgcccaactcaggactgcaataaaaaagtgattgatcagcagaatgggttataccgctgc
gagaagtgcgacagtgaatttcccaatttcaagtaccgcatgatcctgtcggtaaatatt
gcagactttcaggagaatcagtgggtgacttgtttccaggagtctgctgaggccatcctt
ggacagaacactgcttaccttggggagctgaaagagaagaacgagcaggcctttgaagag
gttttccagaatgccaacttccgctccttcacgttcaggatcagggtcaaactagagacc
tacaacgatgagtctcgaattaaggccacggtgatggacgtgaagcccgtggactacaga
gagcacgccaggaggctgatcatgaacatcaggaggaacgcggctctgtga

KEGG   Oryctolagus cuniculus (rabbit): 100347550
Entry
100347550         CDS       T03373                                 
Name
(RefSeq) replication protein A 32 kDa subunit isoform X1
  KO
K10739  replication factor A2
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03030  DNA replication
ocu03420  Nucleotide excision repair
ocu03430  Mismatch repair
ocu03440  Homologous recombination
ocu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100347550
   03420 Nucleotide excision repair
    100347550
   03430 Mismatch repair
    100347550
   03440 Homologous recombination
    100347550
   03460 Fanconi anemia pathway
    100347550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ocu03032]
    100347550
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100347550
DNA replication proteins [BR:ocu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    100347550
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     100347550
   MMR (mismatch excision repair)
     100347550
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     100347550
SSDB
Motif
Pfam: RPA_C tRNA_anti-codon TFA2_Winged_2
Other DBs
NCBI-GeneID: 100347550
NCBI-ProteinID: XP_051685623
Ensembl: ENSOCUG00000016194
LinkDB
Position
Unknown
AA seq 272 aa
MWNSSYETFSSSSYGGTGGYTQSPGGFGSPTPSQAEKKSRARAQHIVPCTISQLLSATLA
DEVFKIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDASGENTVV
PPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTAHILEVVNAHMMLNKSHSQLQPSA
GRASFSNPGMSEAGNFSGNSFLPANGLTPAQNQVLNLIKACPRPEGLNFHDLKNQLHHMT
VASIKQAVDFLSNEGHIYSTVDDDHFKSTDAE
NT seq 819 nt   +upstreamnt  +downstreamnt
atgtggaatagttcctacgagaccttcagcagctccagctacgggggaaccgggggctac
acgcagtcgccgggcggcttcgggtcgcccacgccctctcaggccgaaaagaaatcgaga
gcccgagcccagcacattgtgccctgtaccatatcccagctgctttctgccactctggcc
gatgaagtgttcaaaattgggaatgttgagatttcacaggtcaccatcgtggggataatc
agacatgcggagaaggcaccaaccaacattgtttacaaaatagatgacatgacagctgca
cccatggacgtccgtcagtgggtcgacacagatgacgccagtggggagaacaccgtggtt
cctccagaaacatacgtgaaggtggctggtcacctgaggtctttccagaacaagaagagc
ctggtagcctttaagatcatgcccctggaggacatgaacgagttcactgctcacatccta
gaggtggtgaatgcgcacatgatgctgaacaagtcacacagccagctccagccctcagca
gggagagcatctttcagcaatccaggaatgagtgaagcaggaaacttcagcgggaacagc
ttcctgccggcaaatggcctcactccagcccagaatcaggtgctgaatttgattaaggct
tgcccacgacctgagggattaaactttcatgatcttaagaaccaactccatcacatgact
gtggcctcgatcaagcaagctgtggattttcttagcaacgagggacacatctattctacg
gtagacgatgatcattttaaatctacagatgcagaataa

KEGG   Oryctolagus cuniculus (rabbit): 100358262
Entry
100358262         CDS       T03373                                 
Name
(RefSeq) replication protein A 14 kDa subunit isoform X2
  KO
K10740  replication factor A3
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03030  DNA replication
ocu03420  Nucleotide excision repair
ocu03430  Mismatch repair
ocu03440  Homologous recombination
ocu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    100358262
   03420 Nucleotide excision repair
    100358262
   03430 Mismatch repair
    100358262
   03440 Homologous recombination
    100358262
   03460 Fanconi anemia pathway
    100358262
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ocu03032]
    100358262
   03400 DNA repair and recombination proteins [BR:ocu03400]
    100358262
DNA replication proteins [BR:ocu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    100358262
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     100358262
   MMR (mismatch excision repair)
     100358262
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     100358262
SSDB
Motif
Pfam: Rep_fac-A_3 DUF356
Other DBs
NCBI-GeneID: 100358262
NCBI-ProteinID: XP_017199961
Ensembl: ENSOCUG00000000467
UniProt: G1SDC7
LinkDB
Position
10:28021290..28025897
AA seq 121 aa
MVDVMELPKSRINASMLSQFIDRPVCFVGRLEKIHPSGKMFILSDGEGKTGTVELMEPLD
EEISGIVEVVGRVTAKATIMCASYVQFKEDNNPFDLGLYNEAVKITHEFPQFFPLGVTQH
D
NT seq 366 nt   +upstreamnt  +downstreamnt
atggtggacgtcatggagctgcccaagtcgcgcatcaacgccagcatgctctctcagttc
atcgaccggccagtctgcttcgtggggaggctggaaaagattcatcccagtggaaaaatg
tttattctttcagatggagaagggaaaactggaactgttgagttgatggaacctctcgat
gaagaaatctctggaattgtggaagtcgttggaagagtaacagccaaggcaaccatcatg
tgtgcatcttatgtccagttcaaagaagataacaatccttttgatcttggactttacaat
gaagctgtgaaaattacccacgagttccctcagttttttcctttaggggttacacaacat
gattga

KEGG   Oryctolagus cuniculus (rabbit): 103351965
Entry
103351965         CDS       T03373                                 
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 30 kDa subunit
  KO
K10741  replication factor A4
Organism
ocu  Oryctolagus cuniculus (rabbit)
Pathway
ocu03030  DNA replication
ocu03420  Nucleotide excision repair
ocu03430  Mismatch repair
ocu03440  Homologous recombination
ocu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ocu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103351965
   03420 Nucleotide excision repair
    103351965
   03430 Mismatch repair
    103351965
   03440 Homologous recombination
    103351965
   03460 Fanconi anemia pathway
    103351965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ocu03032]
    103351965
   03400 DNA repair and recombination proteins [BR:ocu03400]
    103351965
DNA replication proteins [BR:ocu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    103351965
DNA repair and recombination proteins [BR:ocu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     103351965
   MMR (mismatch excision repair)
     103351965
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     103351965
SSDB
Motif
Pfam: RPA_C ZW10_C2 WHD_2nd_SelB
Other DBs
NCBI-GeneID: 103351965
NCBI-ProteinID: XP_051683724
LinkDB
Position
X:complement(92501748..92509628)
AA seq 334 aa
MGRSKNPSGSDGWNCCVLVADWLHRLHEDGCGALHNMSACSSRVKRQTSLWSPLTRAKPH
LSSAGAVLKMIKSEFGSHSCISAEGGASGGNDQPSDXGTMPVTMVRSRARXQQVIPCYVS
QLLASXVDNVFKIRRIEISQVSVMGIIRKVERAPNXILCKIDDMTXKPIPVWQSLGKNKV
KQEATVLPVGVYAKVFCVLQLFMGAKSLVVLKIHVLEDMNELTMHVLEMVSAYMMQNKAR
QGESXQNEDGYDVSCIWKEVLHSIHMCPHQEGKSVQELQTQLCGLSEKAIKEAIDYLATE
GRIYPTVDKEHFKSIKAAKASHCLKMFASGCELF
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgggaagaagcaaaaacccatcaggctccgatggctggaattgctgcgttctggtagct
gattggctccacaggttgcatgaagatggctgtggtgccctgcataatatgtcggcttgc
agctcacgggtaaagcgccaaaccagcctgtggagtcccctgacaagagccaagcctcat
ctctcctcagctggagctgtccttaagatgattaagagtgagtttggaagccacagttgc
atctctgctgagggaggagctagtggtggcaatgaccaaccatctgactgaggcacaatg
cctgttacgatggtgagatccagggcccggntccaacaggttataccttgttatgtaagc
cagctgctcgcctctnnggttgataatgtgttcaagattagacgaattgagatttcccag
gtttctgtcatggggataatcaggaaggtggagagggctccaaactaaattctctgcaaa
attgatgatatgaccnccaagccaatcccggtttggcagtcacttggtaaaaataaagtg
aagcaggaagctactgtgctgccagttggagtatatgccaaagtgttttgtgtccttcag
ttgttcatgggagcaaaaagccttgtagtattgaaaatccatgtcctggaggatatgaat
gagttaaccatgcatgttctggaaatggtcagtgcatacatgatgcagaataaagcccgc
caaggggaaagctgacaaaatgaagatggctatgatgtcagctgcatctggaaggaggtg
ctccactcgattcacatgtgtcctcaccaggaagggaagagcgtacaggagctgcagacc
cagctctgtggtctgagcgagaaggccatcaaggaagccattgattatctggccaccgag
ggtcgcatctatcccaccgttgacaaggagcattttaaatctattaaggcagcaaaagca
tctcattgtctgaagatgtttgcctctggctgcgagttattttga

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