Oryctolagus cuniculus (rabbit): 127487387
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Entry
127487387 CDS
T03373
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
ocu
Oryctolagus cuniculus (rabbit)
Pathway
ocu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127487387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocu03019
]
127487387
Enzymes [BR:
ocu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
127487387
Messenger RNA biogenesis [BR:
ocu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127487387
mRNA degradation factors
3'-5' decay
Pan complex
127487387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_CDC20-Fz
WD40_like
Beta-prop_THOC3
Motif
Other DBs
NCBI-GeneID:
127487387
NCBI-ProteinID:
XP_051688693
LinkDB
All DBs
Position
Unknown
AA seq
1215 aa
AA seq
DB search
MNFEGLDPGLAEYAPAMHSTLDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG
VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGNDDIR
QIQSLENGILFLTKNNLKYMARGGLIIFDYLLDESEDMHSLLLTDSSTLLVGGLQSHILE
IDLNTVQETQKYAVETPGVTVMRQTNRFFFCGHTSGKISLRDLRTFKVEHEFDAFSGSLS
DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL
AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS
PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDTLLSDWPAANSAPAP
RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDSEFDTFSQVPESPIGREE
EPHLHMVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEP
VRCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADS
DEASGKGNLARLIQRWNRFILTQLHQDMQELEVPQAYRSAGGSYGISSFCSSGDSVIGQL
FSCEMENCSLCRCGSETVRASSTLLFTLSYPEGRNSDKTGKNYDFAQVLKRSICLEQNTQ
AWCDNCEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRAQAEVAFKMAMKKHGGEVV
KNKEFARADRTHRFLCADRKEVGSPEGALLCPSMEELKNVWLPFSLRMKMTKNKGLDVCN
WTDGEEVQWGPARAEEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTH
QQWYLFNDFLIEPIDKHEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEA
SLARKQRKTHTTFIPLMLNEMPQVGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSV
ARITCVRGQGPNEGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYL
KLRFLIDIGVKFVGHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDL
KIQGETHDSIEDARTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPEGQ
TSPKNAAVFSSVLAL
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgagggtctggaccctggattggcagagtatgctccggctatgcattccacc
ctggaccctgtcctggatgcccacctgaacccgagtctgctacagaatgtggagctggac
ccggagggagtagccctggaggctcttcccgtccaggagtcggtgcacataatggaaggc
gtctactctgagctgcacagcgtggtggctgaagtgggcgtgcctgtctccgtctctcac
tttgacttgcacgaggagatgctgtgggtggggagccacgggggccatgccacttcattt
tttggcccagccttggagcgctactcatcctttcaagtcaatggcaatgatgacattcga
cagatccagagcctagagaatggtattctttttctcaccaagaacaacctcaagtatatg
gcccgtgggggcctcattatatttgattacctgctggatgagagtgaggatatgcacagc
ctcctgctgaccgacagcagcactctccttgttggtgggctgcagagccacatattggag
atcgatcttaacactgtccaggagactcagaagtatgcagtcgaaacacctggagtcacc
gtcatgagacagacaaatcgcttcttcttctgtggccacacatccggcaagatttccctg
cgagacctccgcacttttaaggtggagcatgagttcgacgctttctcagggagtctgtca
gactttgacgtgcacggcaacctcctggctgcctgcggcttctccagccgcctcactggc
ctggcctgcgaccgtttcctcaaggtgtacgacctgcgcatgatgcgtgcgattacaccg
cttcaggtccacgtggatcccgccttcttacgcttcatccccacatatacgtctcggctc
gccatcatctctcagtcgggacagtgccagttttgtgaacccaccggcctggccaaccca
gcagatatctttcatgtgaatcctgtgggtcctctgctaatgacatttgatgtgtcagcc
agcaagcaggccctggcctttggggattctgagggctgcgtgcacctctggactgactcc
cctgagccttctttcaacccctactcccgtgagactgagtttgctttgccctgtctcgtg
gactcactacctcctctggactggagccaggacctgctgcctctttccctcatccctgtg
ccactcaccactgacacacttctctctgactggcctgctgccaactccgctccagccccc
aggcgagcacctcccgtggatgcagagattctgcgcaccatgaagaaagtaggcttcatt
ggctatgcccccaacccccgcaccaggctacgtaatcagattccttaccgactcaaggag
tcggacagtgaatttgacaccttcagccaggtccccgagtcaccgatagggcgggaagag
gagccacatctgcacatggtctctaagaaataccgcaaggtgaccatcaaatattccaag
ctggggctggaagactttgacttcaagcattacaacaagaccctgtttgctggactagag
ccgcacatccccaatgcctactgtaactgcatgatccaggtgctctacttcctggagcct
gttcgctgtctcatccagaaccacctttgccagaaggagttctgcctggcctgtgagctg
ggattcctcttccacatgctggacctctctcgtggcgacccttgccagggcagtaatttt
cttcgagcattccgcaccattcccgaggcctcagcccttggtctgatcctggctgactcg
gatgaggcttccggcaagggcaacctggccaggctcattcagaggtggaatcgcttcatt
ctcacccagctgcatcaagatatgcaggagctggaagtgccccaagcttaccgcagtgct
ggaggcagctatgggatcagcagcttttgctcatcgggggactctgtcattgggcagttg
ttcagctgcgagatggagaactgcagcctctgccgctgtggcagcgagaccgtgcgagcc
tcctccactctgctcttcacgctctcctaccctgagggtagaaacagtgataaaaccggg
aagaactatgactttgctcaggtgctgaagcgaagcatctgcctggagcagaacacacag
gcctggtgcgacaactgtgaaaagtaccagcccacgattcagacccgcaacatccgtcat
ctgccagacattcttgtcatcaattgtgaggttaacagctccaaagaggccgatttctgg
agagcgcaggctgaggttgccttcaagatggcaatgaagaagcacggtggggaagtcgtc
aagaacaaggagtttgctcgggctgaccggacacatcgattcctctgtgctgacaggaag
gaagtggggagtcccgaaggtgcgctgctctgtccctccatggaggagctgaagaatgtc
tggcttcctttctcccttcgcatgaagatgaccaagaacaaagggctggatgtttgcaat
tggactgatggggaggaggtgcagtggggcccagccagggcagaggaggagcatggtgtc
tatgtgtatgacctgatggcaactgtggtacacatcctggactcacgcacagggggcagc
ctggtggctcatatcaaagttggagagacgtaccaccagcgcaaagagggtgttactcac
cagcagtggtatctcttcaatgactttctcatcgaacccatcgataagcatgaagccgtg
cagtttgacatgaattggaaagtacctgcaatcctttattacgtgaaaagaaatctcaat
tccagatataacctgaacatcaagaatcctattgaggctagtgtcctgctggctgaagcc
tcactggcacggaagcagcggaagacacatactacctttatcccactgatgctgaatgaa
atgccacaggttggggatctggtgggcctcgatgctgagtttgtcaccctcaatgaggaa
gaagcagagttacgcagtgatggcaccaagtccaccattaaaccaagccagatgtcagta
gcaaggatcacctgtgttcggggccagggaccaaatgagggtatccccttcattgatgac
tacatctctacccaggagcaggtcgtggattacttgactcagtactcggggataaagccg
ggagaccttgacgccaagatatcctccaagcacctcacaaccctcaagtccacgtacttg
aagcttcggtttctcattgacattggcgtcaagttcgtgggccatggcctgcagaaggac
ttcagggtcatcaacctcatggtgcccaaggaccaagtacttgacactgtgtacctgttc
cacatgccccgaaaacgaatgatttccctgcgattccttgcatggtactttctggacctg
aagattcaaggggagacccatgacagtattgaggatgcccgcacagctcttcagctctat
cgaaagtatctggagctaagcaagaacggcactgagcctgaatccttccacaaggtgctc
aagggcctttatgagaagggccggaagatggactggaaggtgcctgagccagagggccag
acaagtcccaagaacgcagcggtcttctcctcagtgctggcactctga
DBGET
integrated database retrieval system
