Ochotona curzoniae (black-lipped pika): 121158041
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Entry
121158041 CDS
T11174
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121158041 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121158041 (CNOT1)
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121158041 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121158041 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
121158041
NCBI-ProteinID:
XP_040838541
LinkDB
All DBs
Position
Unknown
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCASVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGAQAHTWNVEVLIDVLKELNPSLNFKEVTYE
LDHPGFQIRDSKGLHNVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLINPEIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASL
SIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGG
LGTGSLTGIGSGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKPPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIA
AHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPALAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
QAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatctattacgctgcctattttcgcatgtggattttagtggcgat
ggtaaaagtagtggcaaagatttccatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaagccaaactttatctcgacgctgtcctatgccattgataatcctttgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaagtaatttttggccttgccctcttgaattcttcaagttcagat
ctcagaggttttgctgcccagtttatcaaacagaagcttccagatcttttgcgttcttat
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtt
ctacacctcctcctctcccatctcctttttgggcagaagggagcctttggagttggacag
gaacaaatagacgcatttcttaagacactgcgcagagattttcctcaagaacgctgtcct
gtggtgcttgcaccactcttataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagctaaaaccatgatggagagctccttggctgatttcatgcaa
gaagtgggctatggcttttgtgcaagcgttgaagaatgtcgcaatataatcatgcagttc
ggtgttcgggaagttacagctgcccaggttgcaagggttttgggaatgatggctcgaact
cattcaggattaacagatggtattccattacagagtatctctgctcctggcagtggtatc
tggagtgatggaaaagataaaagtgatggagcgcaggcacacacctggaacgtagaagtt
ttgattgatgttctcaaggaactgaacccaagtttgaatttcaaggaagtaacttatgaa
ctggatcatcctggatttcaaattcgtgacagtaaagggcttcataatgtggtttatggc
attcagagaggcttgggcatggaagtcttcccagtagacctcatatatagaccctggaaa
catgcagaaggccagctctctttcattcagcattccctaataaatccagaaatcttctgt
tttgctgactatccctgtcatactgttgccactgatatcctaaaagcaccacctgaggat
gacaatcgggaaattgccacctggaagagcttggatttgattgaatctctgctaaggctt
gcggaagttggccagtatgagcaagtcaaacagcttttcagcttccctatcaaacactgt
ccagacatgttggtattggccttactacaaattaacacctcttggcacaccttacgccat
gaattgatctccaccttgatgccaattttcctcgggaatcatcctaactctgctattatt
ttgcactacgcatggcatgggcaggggcagtctccttcaattcgccaacttatcatgcat
gcaatggcagaatggtacatgagaggggaacaatatgaccaggccaaattgtctcgaata
cttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccatttgct
tttgttattgaccttgctgcacttgcttcacgtcgtgaatacctcaaacttgacaagtgg
ctcacagacaaaattcgagagcatggggagccattcatccaagcttgtatgacttttcta
aagagacggtgcccttctattttgggtggactagccccagagaaagatcagcccaaaagt
gcccaactccctcctgaaactctggcaactatgttggcttgcttacaagcttgtgcaggg
agtgtttctcaggagttgtcagaaaccatcctcaccatggtagctaattgcagtaatgtt
atgaataaggccagacagccaccacctggagttatgccaaaaggtcgcccacccagtgct
agcagcttagatgccatttctcctgttcagattgaccctcttgctggaatggcatctctt
agtataggtggttcagctgcccctcacacccagagcatgcagggtttccctccaaatttg
ggttctgccttcagtacccctcagtcaccagcaaaagcgtttccacccctttcaacccca
aatcagacaactgcattcagtggtattggaggactttcatcacagcttccagtaggtggt
cttggcacaggcagcctgaccggtataggatctggggctcttggacttcctgcagtgaat
aatgatccttttgtacaaaggaaactgggcacctctggattgaatcagcctacattccag
cagagtaagatgaaaccttcggacttgtctcaggtatggcctgaggcaaatcagcacttt
agtaaagagatagatgatgaagcaaacagctacttccagcgaatatataatcatccgcca
catccaaccatgtctgttgatgaggtattagaaatgctacagagatttaaagactccact
ataaagagggaacgagaagtatttaactgtatgctaagaaacttgtttgaagaataccgt
tttttcccccagtaccctgataaagagttacatataacagcctgcctgtttggtgggatt
attgaaaaaggactggtcacttacatggcactaggtcttgctctacgatatgttcttgaa
gccttacgcaagccatttggatctaaaatgtattattttgggattgctgcactagatagg
tttaaaaatagattgaaggactatccccagtattgtcagcatttggcttctattagtcac
tttatgcagtttccacatcatttacaggagtacatcgagtatggacagcagtctagagat
cctcctgtgaagatgcagggctctatcacaacccctggaagtattgcactggcccaggcc
caggcccaggcccaggttccagcaaaacctcctcttgctggccaggttagcactatggta
accacttcgacaaccaccactgttgctaaaacggttacagtcaccaggccaactggagtc
agctttaagaaagatgtgccaccttctatcaatactacaaatatagatactttacttgtg
gccacggatcaaacagaaagaattgtagagcctccagaaaatattcaagagaaaattgct
ttcattttcaataatctctcccagtcaaatatgacacaaaaggtggaagaattaaaagaa
actgtgaaggaagaatttatgccttgggtttcacaatatctggttatgaagagagttagt
attgagccaaactttcatagtttgtattcaaactttcttgatacattgaagaatcctgaa
tttaacaagatggttttgaatgagacatacagaaacatcaaagtgctcctgacttcagat
aaagctgctgccaatttttcagatcgttctttgttgaagaacttgggacattggttagga
atgatcacattggctaaaaataaacccatcttacacactgatttggatgtgaaatctttg
ctgctagaagcttatgttaaaggacagcaggagttgctttatgttgtgccgtttgttgcc
aaagtcttagagtccagcattcgtagtgtggtttttaggcccccaaatccctggacaatg
gcaatcatgaatgtattagccgagttacatcaggaacatgacttgaagttaaacttgaag
tttgagattgaggtcctctgcaagaaccttgcattagatattaatgagctaaaacctgga
aacctcctaaaggacaaagatcgcctaaagaacttagatgagcaactctctgctccaaaa
aaggatgtgaaacagccagaagaactccctcctattacaactacaacaacatctactact
ccagctaccagcaccacctgcacagccacagtcccaccgcagccacagtacagctaccat
gacatcaacgtgtattcgctcgcaggcttggcaccacacattactctcaatccaacaatt
cccttgtttcaggcacatccacagttgaaacagtgtgtgcgtcaagcaattgaacgtgct
gtccaggagctggtccatcctgtagtggatcgatcgatcaagattgccatgactacttgt
gagcaaatagtcaggaaggactttgccctggattctgaggaatcacgaatgcgaatagca
gctcatcatatgatgcgtaacttgacagctggaatggctatgattacctgcagggaacct
ttgcttatgagcatttctaccaacctgaaaaacagctttgcttcagcccttcgtactgca
tctccccagcaaagggaaatgatggatcaggcagctgctcagttagctcaggataattgt
gaattagcttgctgctttattcagaagacagcagttgaaaaagcaggtcctgagatggac
aagagattagcaactgagtttgaactaagaaaacatgctaggcaagaagggcgcagatac
tgtgatcctgttgtgttaacatatcaagctgagcggatgccagagcaaatcaggctaaaa
gttggtggtgtggatccaaagcagctggctgtttatgaagaatttgcacgtaatgtgcct
ggcttcttgcctaccaatgacttaagtcaaccaacaggatttttagctcagcctatgaag
caagcttgggccacagatgatgttgctcagatttatgataagtgcattacagagttggag
cagcacctgcacgccattccaccagctttggccatgaatcctcaagctcaggctcttcga
agtcttttggaggtggttgtgttgtctcgaaattctcgggatgcgatagctgctcttgga
ttgctgcagaaggctgtcgagggtttactagatgccacaagtggtgctgatgctgacctg
ctgctgcgctacagggagtgccacctcttggtcctaaaagctctacaggatggccgggcc
tatgggtctccctggtgcaacaaacaaatcacaaggtgcctaattgaatgtcgggatgaa
tataaatataatgtggaggctgtggagttgttaattcgcaatcatttggttaatatgcag
cagtatgatcttcacctggctcagtcaatggagaatggtttaaactacatggctgtggca
tttgctatgcagctggtaaaaattctgcttgtggatgaaagaagcgttgcccatgttacg
gaggcagatctgttccacacgatcgaaactctcatgaggattaatgcgcattccagaggc
aatgctccagaaggattgcctcagctgatggaagtagtgcgatccaactatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctggaatttctcaagcctca
gagtacgatgaccctccaggcctgagggagaaggcagagtatctcctgcgggaatgggtg
aatctctaccattcggcagcagctggccgtgacagtaccaaagctttctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcatcagcaaggaatactgaagacagatgac
ctcatcacacggttctttcgtctgtgcacagaaatgtgtgttgaaattagctaccgtgcc
caggctgagcagcagcacaacccagctgctaatcccacaatgatccgagccaagtgctat
cacaacctggatgcctttgtccgactcattgcactgctcgtgaagcactcaggggaggcc
accaacactgttaccaagattaatctgttgaacaaggtccttggtatagtagtgggtgtt
cttttacaagatcatgatgttcggcaaagtgaatttcagcagcttccctaccatcggatt
tttatcatgctactcctggaacttaatgcaccagaacatgtgttagaaaccattaatttc
cagacacttacagctttttgcaatacattccacatcttgaggcctacgaaagctcctggg
tttgtctatgcctggcttgaattgatctctcatcgaatttttattgcaagaatgttggct
catacaccacagcagaaggggtggcctatgtatgcacagctactgattgacttattcaaa
tatttagcgccttttcttagaaatgtggaactcaccaaacctatgcaaatcctgtataag
ggtactttaagagtgctgctggttcttctgcatgacttcccagaattcctttgtgattac
cattatgggttctgtgatgtgatcccacctaactgcatccagttgagaaatttgatattg
agtgccttccccagaaacatgaggctcccagacccattcactcctaatctgaaggtggac
atgttgagtgaaattaacattgctccccggattctcaccaacttcactggagtgatgcca
cctcaattcaaaaaggatttggattcctatcttaaaactcgctcaccagtaacttttctg
tctgatttgcgcagcaacttacaggtatctaatgagcctggcaatcgctacaatctgcag
ctcatcaatgcactggtgctctatgtagggactcaggccattgcacacatccacaacaag
ggcagtactccttcaatgagcaccatcacccactcagcacacatggatatcttccagaac
ttggccgtggacttggacactgaaggtcggtatctcttcctgaatgcaattgcgaaccag
ctgagatacccaaacagccacactcactacttcagctgcaccatgctgtacctttttgca
gaggccaacaccgaagcaatccaggaacagatcacaagggttcttttggaacggttgatt
gtaaataggccacatccttggggtcttcttattaccttcattgaactgattaaaaaccca
gcatttaagttctggaaccatgagtttgtacactgtgccccagaaattgaaaagttattc
cagtcggttgcacagtgctgcatgggacagaagcaggctcagcaagtaatggaagggaca
ggtgccagttag
DBGET
integrated database retrieval system
