Ochotona curzoniae (black-lipped pika): 121161489
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Entry
121161489 CDS
T11174
Name
(RefSeq) TAR DNA-binding protein 43
KO
K23600
TAR DNA-binding protein 43
Organism
ocz Ochotona curzoniae (black-lipped pika)
Pathway
ocz03015
mRNA surveillance pathway
ocz05014
Amyotrophic lateral sclerosis
ocz05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
ocz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121161489
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
121161489
05022 Pathways of neurodegeneration - multiple diseases
121161489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocz03019
]
121161489
Messenger RNA biogenesis [BR:
ocz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
121161489
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TDP-43_C
TDP-43_N
RRM_1
RRM_7
RRM_PARP14_3
RRM_3
RRM_5
Motif
Other DBs
NCBI-GeneID:
121161489
NCBI-ProteinID:
XP_040843834
LinkDB
All DBs
Position
Unknown
AA seq
414 aa
AA seq
DB search
MSEYIRVTEDENDEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGI
LHAPDNGWGNLVYVVNYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDL
KDYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNS
KQSPDEPLRSRKVFVGRCTEDMTADELRQFFCQYGEVVDVFIPKPFRAFAFVTFADDQVA
QSLCGEDLIIKGISVHISNAEPKHNSNRQLERSGRFGGNPGGFGNQGGFGNSRGGGAGLG
NNQGSNMGGGMNFGAFSINPAMMAAAQAALQSSWGMMGMLASQQSQSGPSGNNQSQGNMQ
REPNQAFGSGNNSYSGSNSGAAIGWGSASNAGSGSGFNGGFGSSMDSKSSGWGM
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagtatatccgagtaactgaggatgagaacgacgagcccattgagatcccgtcg
gaggacgacggcacggtgctgctgtccacggtcacggcccagttccccggcgcctgcggc
ctgcgctaccgcaaccccgtgtctcagtgcatgcgtggggtgcggctggtggagggcatc
ctgcacgcccccgacaatggctggggcaacctggtgtatgtggtgaactaccccaaagat
aacaagaggaaaatggatgagactgacgcatcgtcggccgtgaaagtgaagagggcggtc
cagaagacgtctgacctgattgtgctgggcctgccctggaagacgaccgagcaggatctc
aaggactacttcagcaccttcggagaagtcctgatggtgcaggtcaaaaaagatattaaa
acgggtcattccaaagggtttggctttgttcgttttacggagtatgagacccaggtgaaa
gtgatgtcacagcggcatatgatagatgggcgatggtgtgactgtaagctccccaactcg
aagcaaagcccggatgagccgctgcggagccggaaggtgtttgtcgggcgctgcacagag
gacatgacggccgacgagttacggcagttcttctgccagtacggggaggtggtggacgtc
ttcattcccaagcctttccgagcgtttgcctttgtcacgtttgcggatgatcaggtcgcc
cagtctctgtgtggagaagacttgatcattaaggggatcagcgtgcacatatccaacgcc
gagcctaagcacaatagcaatagacagttagagagaagtggaagatttggtggtaatcca
ggtggctttgggaatcagggtggctttgggaacagtcgagggggtggagctggcttgggg
aacaatcaaggcagtaacatgggcggggggatgaactttggggcgttcagcattaaccca
gccatgatggccgcggcgcaggcagccctgcagagcagctgggggatgatgggcatgttg
gccagtcagcagagccagtcaggcccgtcgggcaataaccaaagtcaaggcaacatgcag
agggaacccaaccaggccttcggctctggaaacaactcctacagtggctccaactcgggg
gcagcgattggctggggctcagcgtccaacgcaggctcaggtagtggtttcaatggcggc
tttggttccagcatggattccaagtcttctggctggggaatgtag
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