Ostrea edulis (European flat oyster): 125664084
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Entry
125664084 CDS
T09123
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
oed
Ostrea edulis (European flat oyster)
Pathway
oed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125664084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oed03019
]
125664084
Messenger RNA biogenesis [BR:
oed03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125664084
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125664084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
CNOT1_HEAT
DUF3819
CNOT1_1st
DUF7809
PolC_DP2_central
Motif
Other DBs
NCBI-GeneID:
125664084
NCBI-ProteinID:
XP_056008645
LinkDB
All DBs
Position
1:11888755..11931663
Genome browser
AA seq
2434 aa
AA seq
DB search
MNLDSLSFALAEISYSVANLTKKNFKSSVAEISHLLSKHGAEADRHLFRCLFSHVDFSGD
GRSSGKDFHQTQFLIQEFGSLLGKPNLVSTLCYAIDNPLHHQKSLKPSSQLFAQVSRVLK
LTRVQEVVFGLALLNSSNSETRNYSAQFVKQKLPDLIKSYVDADSSLKQEGGLQDAPIEV
IHLLLTSLFKCKDNFGIGTEQKEVFIRTLKKDFPFERVPVILGPLLYPDAEDLFIEKLAD
TSTMPKSALDASLAEMIHEAGYSCTTSIEECRGSLMQFGVREISPSSVAKVLGMMARTPT
GLDGQNMQQAHTSLAPGSGWGDMMDKGDKPGFNTWNVEVFVSVIQDLAPHFNWRDVVGEL
DHSTFLVVNKRGLRLLLQGLNRGLQDVFPIEYIYRPWKNTEGQLSFIVQSLRNPDVFCFA
DYPCHTVVIDILKSAPDDDNREIVTWKSLDLVETLLRLSDSGHYQTVSEMFKIPVQNCPD
MLVLALLQISPTWNTLKQELISTLMPIFLGNHSNSAVVLHYAWHCQGHSSTIRTLIMHSM
AEWYMRGEQHDQGRLSRILDVAQDLKALSMLLNATPFAFVIDLACLASRREYLKLDKWLS
DKIREHGEPFIQTCVNFLKRRCPQLVGGLSKDENQPQMKSQMLPTETIATMLSCLQQCAR
INSLRSQVSQELSEAILTMVANATMLLNKPRQAPPGVVGPVPKTMPNIPPPPSNPLDESN
TLGIPKSWTMSAVGNSGFPQGLAAPLTSTTTPGSPAKPGFQQITQPSSVTGLQGISSQLQ
SLSIQNPLAPPRNPGINTLVGQAMLKPSPPQGAPPQAQPTQATLGQQQALTPQAVVRPIG
QTAGDISSIFPDIQQQFSKEVEDEANSYFQRIYNQPPTPTMSIDEVLDMLKRFKDSPDKK
EKDVYECMLRNLFEEYRFFPQYPERELHTTAVLFGGIIEKGLATYMALGIALRYVLEALK
KQHNSKMYFFGIAALDRFKTRLKDYPQYCQHLAAIPHFHQFPQHLIEFVKYGAQSQEPPQ
QPVSSRSISPTMGSLGLTGLHTGPLGMMQPSGTPTSSVAGSSHEGIPTTTVSTSTPISSA
QPAAKPLPKVPPSIASATNIDTLLAGQGKEEFSVPPETVQDKVFFIFNNLSLANMVQKAE
EFKKEVTEEYLPWAAQYLVMKRASIEPNFHTLYANFVDALNLSKLATMVTKETFRNIRVL
LRSDKGDANFSDRTLLKNLGHWLGMLTLAKNKPILQIDIDLKGLLYEAYHKSSRELLYVV
PFTAKVVESCAKSKVFKPPNPWTVAIMNALAELHQEPDLKLNLKFEIEVLCKTLNINLGD
LKPGNYLKDTLRLQTHEPQLSSVKPVMQPAPITPQPEPSLILTASTPTVTTTTVTTAATV
PTTSTPNLPPRPQFAYEDINTNNFATLANQIHMSGQVALLQTYPNLKQLVKMAVEKSVQE
LMPPVVERTNKITLTTCEQIIKKDFALDPEETRMRAAAHHMIRNMTSALALITSREPLYH
SISTNLKTAFMSALRLTAEAASTQEKDAIEQAATVLATDNAELACVFIQKTAVERAIPEM
DKRLATEYELRKHARNEGRRYCDPGVLTYQAERMPEQIRLKVGGVTPAQISVYEEFAHNI
PGFLPTNETPQPHPGVTKPVPVQPDEISQMLEKIGRDIEQVLQTFMVPPSNPLANQLHKV
IEAVMYARNSREIGSIETLLQKTVNGLMELYTNNTTEQELMSRFRDCHILVLKCLHDPRA
YGPVWLKKQVTRALIERSDDQKYNLEALDCLIRNQLVALPQYDMYVVQLMDNGMNYMAVA
FAMQLVQRYCVSDKHSAVLTEADFANTIEALNAISTRSINPPEGLQTLLDSLRPSNVSST
TTAAPSTDFVFVDQTAALKAASGMMHTGIIQARDIDGDPPGLHEKAEYLLREWVNMYHSP
AAGRDSTKAFTAFVQQMHQQGILKNDDVITRFFRLCSEMCVDLCYRAMGEVTPTINQALV
RAKCFYTLDAFVRLIALLIKHSGDNANTVTKINLLNKVLGIVAGVLLQDHIVRMSEFQQL
PYHRIFIMLFIELNAPEHILENINYQVLTAFCNTFHVLRPAKSPGFSYAWLEFISHRVFI
GRMLALTPQQKGWGMYAQLLIDLFKFLAPFLRNADLTKPTQMLYKGTLRVLLVLLHDFPE
FLCDYHYGFCDVIPPNCVQMRNLILSAFPRNMRLPDPFTPNLKVDMLADISHPPRILINF
ASKIQPAQFKKDLDSYLKSRSPVTFVSDLRSYLQSSEPGTRYNIQLMNALVLYVGTQAIQ
FIHGKGLTPSMSTIAHSAHMDIFQNLAVALDTEGRYLFLTAIANQLRYPNSHTHYFSCTL
LYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPQFKFWNHEFVHCAPE
IEKLFESVARSCMQPKQNQQASTGIRESETNEMH
NT seq
7305 nt
NT seq
+upstream
nt +downstream
nt
atgaatctagactctttatcatttgctttggctgaaataagttattcagtggccaatcta
acgaagaaaaattttaagtcgagtgtcgctgaaataagtcatcttctaagtaaacacggt
gctgaggcagatcgacacttgtttcgctgccttttttctcatgtagacttcagcggtgat
ggtagaagcagtggaaaagattttcatcagacacagtttttgatacaggaatttggaagt
ctacttggaaaaccaaatttagtatcaactctgtgttacgcaattgacaaccctcttcat
catcagaagagtttgaaaccatcatcacagctctttgctcaagtcagtcgtgtcttgaag
ctaactcgagttcaagaggtggtatttggactagctctccttaactcctccaactctgaa
acaaggaactattctgcccagtttgtcaaacaaaagctgcctgatctcatcaaatcctat
gttgatgcagacagtagcttaaaacaggaaggaggcttgcaggacgctcccattgaagtt
attcatcttttgttaacaagcctttttaaatgtaaagacaattttggcattggaacagag
cagaaagaagtttttattaggactttgaagaaagactttccttttgagagggtccctgtg
attttgggaccattgctatatccagacgcagaggatttattcatagagaaattagcagac
acatccaccatgcctaaatcagcactggatgcctctctggctgagatgatacatgaagct
ggctacagttgtaccacaagcattgaagaatgtcgtggaagtctaatgcagtttggtgta
agggagatctccccatcttctgtggcaaaagttttaggtatgatggcaagaaccccaaca
ggattggatggacaaaacatgcagcaggcacatacaagcttggctccagggtcaggttgg
ggtgacatgatggacaagggagataaacctggattcaacacgtggaatgtggaagtcttc
gtttcagtcatacaagatctggccccacatttcaactggcgagatgttgttggagagctg
gaccattccaccttccttgtagtgaacaaaagggggctaagactgctactccagggatta
aatcggggcctacaggacgtgttccccatagagtacatctaccgaccctggaaaaacaca
gagggacagctgtccttcatcgtccagtctctgaggaatcctgacgtattctgttttgcg
gattacccttgtcatactgtggtgatcgacatcctgaagtccgcgccagatgacgacaac
agagaaatagtcacatggaagtccttggacctggtggagaccttgttgagactgtcagac
tcagggcactaccagactgtatcagagatgtttaaaatccctgtccagaattgtccagat
atgctggtgctggcacttctgcaaatttcgcccacctggaacactctaaagcaggaactg
atatcgaccctgatgccaatctttcttgggaatcattccaattctgccgtggtactccac
tatgcctggcactgccagggtcactccagcacaatccggaccctcatcatgcactccatg
gctgagtggtacatgcggggggagcaacatgaccagggcaggctctctagaattctagac
gttgcacaggacttaaaggcattatcaatgctgctgaatgccacaccgtttgcctttgtg
attgacttggcttgtttggcctccagaagagaatacctgaagctagacaagtggctttcc
gacaaaatcagagagcatggggaaccctttatccagacctgtgtgaatttcctcaagcgt
agatgtcctcagctggtgggcggactctctaaggacgagaaccagcctcagatgaagagc
cagatgttgcccacagaaaccatagccaccatgttgtcctgtctccagcagtgtgcgagg
attaatagtctcagaagccaagtatctcaggagttgtcggaggccattctgacaatggta
gccaatgcaacaatgctcttaaacaaaccaagacaggctccaccaggggtggtgggaccc
gtacccaaaacaatgcccaatataccaccaccccccagcaatccgcttgatgagagcaat
actcttggaattcccaagtcgtggacaatgagtgctgtgggaaattctgggtttccccag
ggtctggctgctccactgacttctaccactaccccggggtccccagccaagccaggattt
caacaaatcacgcagccctcatctgtgaccgggctgcaggggatttcttcacaactccaa
tctctgtcaattcaaaatccattagcacctccaagaaatccaggaatcaacacattagtt
ggacaagccatgctgaaaccctcccctccccagggggcaccccctcaggctcagcctact
caagcaaccttaggccaacaacaggcattgactcctcaggcggtggttagaccaataggc
cagacagctggagacatatccagcattttcccagatattcagcagcagttttccaaagag
gtggaggatgaagccaattcgtacttccagaggatttataaccagcctccaacccccacc
atgtccatagatgaagtgctggacatgctgaagcggttcaaagattctcccgacaaaaaa
gaaaaggatgtgtatgagtgtatgttgaggaacttgtttgaagagtacagatttttccct
cagtatcctgagagggagttacacacaacagccgttttatttggaggaatcatcgagaaa
ggattagcaacgtatatggcgttaggaattgcccttagatatgtgttggaggcattgaag
aagcaacacaattccaaaatgtatttctttggaattgcagcactagacagatttaaaacg
agattaaaagactacccccagtattgtcagcatctagcagctattcctcattttcaccag
ttcccgcaacatctcatcgagtttgtgaaatacggagcccagtcccaggagcctccccaa
cagcctgtttcctctcgcagtatttcccccaccatggggagtctggggctcacaggattg
cacaccggacccttaggaatgatgcagccgtctgggacccccacctccagtgtcgccgga
tctagtcatgagggaattcccacgaccactgtatctacatctaccccaatctcctcagcc
cagccagcagccaaacccttaccaaaggtaccgccctccattgccagcgctacaaacatt
gacacactgctggcaggacaggggaaggaggaattctccgttcccccggagacagttcag
gacaaggtcttcttcattttcaacaacctttcactggccaacatggttcagaaggctgag
gagtttaagaaggaggtgactgaggagtacctgccctgggccgctcagtacttggtgatg
aagagggccagcattgaaccaaactttcacacactctatgccaattttgtggatgccttg
aatctctcaaaacttgcaactatggtgacaaaggagactttcagaaatatcagggtattg
ttaagaagtgataaaggcgacgctaatttctcagacaggacactgctgaaaaacttgggt
cattggttgggaatgttaaccctggccaaaaataaacccatccttcaaatagacatagac
ttgaaaggtctgttgtatgaagcttaccacaaaagttccagggagctcctctatgtcgtt
ccgtttactgccaaagtagtggagtcctgtgcaaaaagcaaggttttcaaaccacccaat
ccatggacagtggcaatcatgaatgcacttgctgaacttcatcaagaacccgacctgaaa
ttaaacttgaagtttgaaatagaagtcttatgtaagactctgaatattaacttaggggat
ctgaaaccaggaaattacttgaaagacaccttgagactgcagactcatgagccccagctg
tcatcagtgaaacctgtgatgcagcctgcccccatcaccccacagccagaaccgtccctt
attctgacagcctccacccccactgtcacgacaaccactgtcaccacggcagccacagtc
cccaccactagcacacccaacctgccaccaaggccacagtttgcatatgaagatatcaac
accaacaactttgctactttagctaatcagattcacatgagtggacaggtggccctgtta
cagacgtaccccaaccttaagcagctggtcaagatggctgtagagaaatctgtgcaggag
ctgatgcctccagtggtagagagaacaaacaaaatcacactcactacatgtgaacaaatc
atcaagaaggactttgcattggaccctgaagaaaccagaatgcgggcagcagctcaccat
atgatcagaaacatgacatccgccctggccctcatcacatcaagggaacccctataccac
agcatctcaactaatcttaagactgcatttatgagtgcactcagactcacagcagaggca
gccagcactcaggagaaggatgctatagaacaagctgccacagtcctggcgacagacaat
gccgagttagcttgtgtcttcatacagaaaactgcagtggagagggccattcctgagatg
gacaagagactggccacggaatatgaacttcgtaaacatgccagaaatgaaggcaggcga
tactgcgatccaggagttctgacctatcaagctgagagaatgccagaacagattagacta
aaggttggaggagtaacaccggctcagatttcagtgtatgaagaatttgcacataatatt
cctggatttcttcccacgaatgagactccacagccccacccaggggtgaccaaacctgtg
cctgttcagccagatgaaatttctcagatgttggagaaaattggaagagatattgagcaa
gtcctgcaaactttcatggttcctccatcaaatccccttgcaaatcagctacacaaagtt
atagaggctgtaatgtatgctaggaacagcagagaaatcggatcgattgagactctgctt
cagaagacggtgaacggactgatggaattgtacaccaacaatactacagagcaggagctc
atgagtagattccgtgactgtcacattctagtactcaaatgcttacatgacccacgggca
tacggtccagtgtggctcaaaaaacaggtgacccgtgcccttattgaacggagtgatgat
caaaagtacaatttggaggcgttggattgtctcattcgtaaccagctggtggccctgcca
cagtatgacatgtatgtggtgcagctgatggacaacggaatgaactatatggctgtggcc
ttcgctatgcagttagttcagagatactgtgttagtgataaacatagtgctgttcttact
gaggcggactttgccaacacaatagaagctctaaatgccatctccaccaggtccattaat
ccacctgaagggttgcagactttgcttgacagcctgcgtcctagcaatgttagcagcact
actactgctgccccaagcaccgactttgtctttgtggaccagactgcagccctaaaggca
gcctcaggaatgatgcacacagggatcatccaggccagagatattgatggggaccctcca
gggcttcacgaaaaggcggagtacctcctaagagagtgggtcaatatgtaccactccccc
gctgctggcagggacagcacaaaagcattcactgcatttgtccaacagatgcaccagcag
ggtatactgaagaatgatgatgtaatcacacggttctttcgtctttgttccgagatgtgt
gtagatctttgctacagagccatgggtgaggtcactcccaccatcaatcaggccctagtg
agagccaagtgtttctacacgctggacgcatttgttcgccttattgccctgttgatcaaa
cactcaggagacaatgctaatacagtgacaaaaatcaatcttcttaacaaggtgctcgga
attgtggcaggtgttttgcttcaggatcacatagtgaggatgtcagaattccagcagctt
ccgtatcaccggatttttattatgctctttattgagttgaatgcaccagaacatatccta
gaaaacatcaactaccaggtcctcacagcattctgcaacactttccacgtgctgagacct
gccaagtcgccaggattttcctacgcatggttggagtttatatcacatcgtgtcttcatt
ggtcgaatgttagctctgacaccccaacaaaaggggtggggaatgtatgcccagttgctg
attgatctgttcaagtttctggctcctttcctgaggaatgctgatctcacaaaacccact
cagatgttgtacaagggaacgctgagggttttactggtcctgcttcatgacttcccagag
ttcctctgtgattaccattatggattctgtgatgtcattccaccaaactgtgttcagatg
cgtaatctaattcttagtgcatttcctcggaacatgaggctccccgatccgttcacacca
aacctgaaggtggatatgttggcagacatttctcatccacctcgcattctcatcaacttt
gcaagcaaaatccagccagctcagtttaaaaaggatttagattcctacttgaagtcgaga
tctcctgtgacgtttgtatcagacttgcgaagctacttgcagtctagtgagcctggaacc
cgatacaatattcagctgatgaatgccttggttctgtatgtgggcacacaagccatacaa
ttcatccatggtaaaggtctgacgcccagtatgagcactattgcccactccgcccacatg
gacatcttccagaacttggccgttgccttggacacagaaggtcgatacctgttcttgact
gccatagctaaccagctgaggtaccccaatagccacacccactatttcagttgtacactt
ctgtacttgtttgcggaggcaaataccgaggccattcaggagcagataactagggtgctg
ttggagaggctcatcgtgaacagacctcacccctgggggctcctcatcaccttcattgaa
ttgatcaagaatcctcagttcaagttttggaatcatgagtttgtgcattgtgccccggag
atagagaaactctttgaatcagtggccagatcctgcatgcaaccaaaacaaaatcagcaa
gcttcaactggtatacgagaatcagaaacaaacgaaatgcactag
DBGET
integrated database retrieval system
