Oerskovia sp. KBS0722: FFI11_008555
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Entry
FFI11_008555 CDS
T06124
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
oek
Oerskovia sp. KBS0722
Pathway
oek03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
oek00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FFI11_008555 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oek03021
]
FFI11_008555 (rpoB)
03400 DNA repair and recombination proteins [BR:
oek03400
]
FFI11_008555 (rpoB)
Enzymes [BR:
oek01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FFI11_008555 (rpoB)
Transcription machinery [BR:
oek03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FFI11_008555 (rpoB)
DNA repair and recombination proteins [BR:
oek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FFI11_008555 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QDW62580
LinkDB
All DBs
Position
1899637..1903161
Genome browser
AA seq
1174 aa
AA seq
DB search
MAASRTPSAPSADAIANRTASRRVSFAKIYEPLEVPDLLGLQTESFDWLLGNPAWRARVD
AAAAAGRQDVPSTSGLEEIFEEISPIEDFGSSMSLSFSNHRFEPPKYSAEECKEKDFTFA
APLFVTAEFVNYNTGEIKSQTVFMGDFPLMTARGTFIINGTERVVVSQLVRSPGVYFERQ
ADKTSDKDIYSAKIIPSRGAWLEFEIDKRDAVGVRVDRKRKQSVTVLLKALGLTESQIRE
EFADFPSVLDTLEKDHVHTEEEALVDLYRKIRPGEPPTVEAGRSLLENFYFNPKRYDFAK
VGRYKANKKLGVDAPLGDSTLSVTDIVATIKYLAALHAEVTTLPGTRAGEPVEIRVETDD
IDHFGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVASIKE
FFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETP
EGPNIGLIGSLASYGRINPFGFIETPYRKVEAGKVSDEVVYLTADDEDRYVIAQANTELN
ADGSFRAERVLVRTKGGETADVLGTEVDYMDVSPRQMVSVATALIPFLEHDDANRALMGA
NMQRQAVPLVRSEAPLVGTGMERRAAIDAGDVIVATKPGVVTEVSADLIVVANDDATTTS
YRAAKFRRSNQGTSYNQRVVVDEGARVEVGSVLADGPATDEGELSLGRNLLVAFMSWEGH
NYEDAIILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEDVLADLDERGV
IRIGAEVGAGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGTVIG
VREFNREDGDELPAGVNQLVRVYIAQRRKITDGDKLAGRHGNKGVISKILPVEDMPFLED
GTPVDVILNPLGVPGRMNVGQVLETHLGWVAKQGWDISQTDGAAGEGDLSWKEHVPAVAA
SSEPGRPVATPVFDGLEEEALTGLLSTTLPNRDGNRMVGRDGKARLFDGRSGEPFPEPVS
VGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT
LQELLTIKSDDVPGRVKVYEAIVKGENIPDSGIPESFKVLLKEMQSLCLNVEVLSSDGVS
IEMRESDDDVYRAAEELGIDLSRRPNAASTIDEI
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
ttggctgcctcgcgcaccccttctgctccgtccgccgacgctatcgcgaaccgcaccgct
tcccggcgcgtatctttcgccaagatctacgagcctctcgaggtgcccgacctgctcggg
ctccagaccgagagcttcgactggctgctgggcaacccggcgtggcgcgcacgcgtcgac
gccgcggccgccgccggtcgccaggacgtcccctcgacgtcgggtctcgaggagatcttc
gaggagatctccccgatcgaggacttcggctcctccatgtctctctccttctccaaccac
cgcttcgagcccccgaagtactcggccgaggagtgcaaggagaaggacttcaccttcgcc
gcgccgctcttcgtcaccgcggagttcgtgaactacaacaccggtgagatcaagagccag
acggtcttcatgggcgacttcccgctcatgaccgcacgcggcaccttcatcatcaacggc
accgagcgcgtcgtcgtctcgcagctcgtccgttcgcccggtgtgtacttcgagcgccag
gccgacaagaccagcgacaaggacatctactccgcgaagatcatcccgtcgcgcggtgcg
tggctggaattcgagatcgacaagcgcgacgccgtcggcgtccgcgtcgaccgcaagcgc
aagcagtccgtcacggtcctgctcaaggccctcggcctgaccgagtcgcagatccgcgag
gagttcgcggacttcccgtcggtgctcgacacgctcgagaaggaccacgtccacaccgag
gaagaggcgctcgtcgacctctaccgcaagatccgtccgggcgagccgcccacggtcgag
gccggtcgctcgctcctcgagaacttctacttcaaccccaagcgctacgacttcgcgaag
gtcggccgctacaaggcgaacaagaagctcggcgtcgacgcgcccctcggcgactccacg
ctgtccgtcacggacatcgtcgcgacgatcaagtacctcgcggccctgcacgccgaggtc
acgaccctccccggtacgcgtgccggcgagcccgtcgagatccgcgtcgagaccgacgac
atcgaccacttcggcaaccgtcgtatccgcgccgtgggtgagctcatccagaaccaggtc
cgtacgggcctgtcccgcatggagcgcgtcgtgcgcgagcgcatgacgacccaggacgtc
gaggcgatcacgccgcagaccctgatcaacatccgccccgtggtggcgtcgatcaaggag
ttcttcggcacctcgcagctctcgcagttcatggaccagaacaacccgctcgccggcctg
acgcacaagcgtcgtctgtccgcgctgggcccgggtggtctgtcccgtgaccgtgccggc
atggaggtccgtgacgtccacccgtcgcactacggccgcatgtgccccatcgagacccct
gagggtccgaacatcggtctgatcggctcgctcgcctcctacgggcgcatcaacccgttc
gggttcatcgagacgccgtaccgcaaggtcgaggcgggcaaggtctccgacgaggtcgtc
tacctgacggccgacgacgaggaccgctacgtcatcgcccaggcgaacaccgagctcaac
gccgacgggtcgttccgtgccgagcgtgtcctggtccgcaccaagggtggcgagacggct
gacgtcctcggcaccgaggtcgactacatggacgtctcgccgcgccagatggtgtcggtc
gcgaccgccctcatcccgttcctcgagcacgacgacgcgaaccgcgcactcatgggtgcc
aacatgcagcgtcaggccgtgcccctggtccgctccgaggccccgctcgtgggtaccggc
atggagcgtcgtgcagccatcgacgccggtgacgtcatcgtcgccaccaagcccggtgtc
gtcaccgaggtctccgctgacctgatcgtcgtcgcgaacgacgacgcgaccacgacgagc
taccgcgcggcgaagttccgccgctcgaaccagggcacgtcgtacaaccagcgcgtcgtc
gtcgacgagggcgctcgcgtcgaggtcggctccgtgctggccgacggccccgcgacggac
gagggcgagctctcgctcggccgcaacctgctcgtcgcgttcatgtcctgggaaggccac
aactacgaggacgcgatcatcctgtcgcagcgcctcgtgcaggacgacgtcctgtcctcg
atccacatcgaggagcacgaggtcgacgcccgcgacacgaagctcggccccgaggagatc
acgcgggacatcccgaacgtctccgaggacgtcctggcggacctcgacgagcgcggtgtc
atccgcatcggtgcagaggtcggcgcgggcgacgtgctcgtcggcaaggtcacgcccaag
ggtgagaccgagctgacccccgaggagcgcctcctgcgcgccatcttcggcgagaaggcc
cgcgaggtccgcgacacgtcgctcaaggttccccacggcgagtccggcaccgtcatcggc
gtccgcgagttcaaccgcgaggacggcgacgagctgcccgccggcgtcaaccagctggtc
cgcgtctacatcgcgcagcgacgcaagatcacggacggcgacaagctcgccggccgtcac
ggcaacaagggtgtcatctcgaagatcctccccgtcgaggacatgcccttcctcgaggac
ggcaccccggtggacgtcatcctcaacccgctgggtgtccccggtcgtatgaacgtcggc
caggtcctcgagacccacctcgggtgggtcgcgaagcagggctgggacatttcgcagacc
gacggcgcagccggcgagggcgacctgtcctggaaggagcacgtccctgcggtcgctgct
tcgtccgagccgggccgtcccgtggcgacgccggtcttcgacgggctcgaggaggaggcc
ctcacgggcctgctctccacgaccctcccgaaccgtgacggcaaccgcatggtcggccgc
gacggcaaggcacgtctgttcgacggccgctccggcgagccgttcccggagccggtctcc
gtgggctacatgtacatcctgaagctccaccacctggtggacgacaagatccacgcccgc
tcgaccggtccgtactcgatgatcacgcagcagccgctgggtggtaaggcgcagttcggt
ggacagcgtttcggcgagatggaggtgtgggcgctcgaggcatacggcgcggcgtacacc
ctccaggagctgctgacgatcaagtccgacgacgtcccgggccgcgtgaaggtctacgag
gcgatcgtcaagggcgagaacatccccgactcgggcatcccggagtccttcaaggtcctc
ctgaaggagatgcagtcgctgtgcctgaacgtcgaggtgctctcgagcgacggtgtctcc
atcgagatgcgtgagtccgacgacgacgtgtaccgcgctgccgaggagctcggcatcgac
ctgtcgcgtcgccccaacgcagcatccacgatcgacgagatctga
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