Osmerus eperlanus (European smelt): 134011922
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Entry
134011922 CDS
T10927
Symbol
snrnp200
Name
(RefSeq) LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134011922 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oep03041
]
134011922 (snrnp200)
Enzymes [BR:
oep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
134011922 (snrnp200)
Spliceosome [BR:
oep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
134011922 (snrnp200)
Complex C
U5 SnRNP specific factors
134011922 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
134011922
NCBI-ProteinID:
XP_062307453
LinkDB
All DBs
Position
25:complement(7433243..7447636)
Genome browser
AA seq
2146 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKSQRTK
PQMLEERRAKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDQGSDEDSEGEEADVGSAL
TANLGVTGDVMTAKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKEKIIGKMESDQELSKIL
YQLQETEKEDIIREERSRRERVRKSRMDNDLESMDIDHGESMTPRQLLDLEDLAFTQGSH
FMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVPIEKLPKYAQAGFEGFKTL
NRIQSKLFKTALETDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINLDDFKIIYV
APMRSLVQEMVGSFSKRLASYGIIVSELTGDHQLCKEEINATQVIVCTPEKWDIITRKGG
ERTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDV
ATCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVAKLPDML
NAEIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLVHTAA
NVLDKNSLVKYDKRTGSFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLS
SEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVE
LTITPDFQWDDKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEP
LPPQYFIRVASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNAAFETLY
HNKFPFFNPIQTQVFNALYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNVEGRCVYITP
MEALAEQVFMDWHQKFQDALSKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQ
RKNVQNVSLFIVDETHLIGGDNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA
HWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVV
FVPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKVADATLKETLANGVGYLH
EGLNTTERKIVEQLFNSGAVQVVVASRSLCWGTNISAHLVVVMDTQYYNGKIHAYVDYPI
YDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIV
TKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVEHTLHDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAADVQQHPIR
HHEDTLLRQLAQKVPHKLNNPKFNDPHVKTNLMLQAHLSRMQLSAELQSDTEDILSKAVR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTSEHIKRCTDKGVES
IFDIMEMEDEERSALLQLSDGQIADVARFCNRYPNIELSYEVAEKDNIKSGGPFLILVQL
EREEEVTGPVIAPALPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVLGV
HKLRCYFMSDAYMGCDQEYKFSVDVKEADQRGATATRTEVTWRSSN
NT seq
6441 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgcgcgtagcttgcagtacgagtacaaagcgaactctaacttggtt
ttgcaagctgaccgctctctgatcgaccgcacacgccgcgatgagcccaccggagaggtg
ctgtcactggtggggaagttggaggggaccaagatgggagataagtcacagaggaccaag
ccgcaaatgctggaagagagacgtgcaaagagaagaaagagagatgaagacaggcacgac
atcaataagatgaaaggcttcacccttctgtctgagggcattgatgagatggtgggtatc
gtatacaagcccaaaacaaaggagaccagagagacctatgaagtcctgctcagcttcatc
caggccgccttaggagatcagcctcgtgacatcttgtgcggggcggcggacgaggtcctg
gccgtgctgaagaacgacaagatgagggacaaggagaggcggcgggaggtggaacagctg
ctggggccggccgacgacacgcgctaccacgtgctggtcaacctgggcaagaagatctcc
gactacgggggagacaaggagctgcagaacatggatgacaacatcgacgagacctatgga
gtgaatgtccagtttgaatctgacgaggaggagggggacgaggaccagtttggggaggtg
cgagaccagggctctgatgaggacagcgagggagaggaagcggacgtgggcagcgcgctc
acggccaacctgggggtcacgggggacgtgatgacagccaagaagaaggacctgcaccct
cgcgacatcgacgccttctggctccagcgccagctcagccgtttctacgacgatgccatc
gtgtcacagaagaaagcagacgaggttctggagatcctgaagacagccagtgacgacaga
gagtgtgagaaccagctggtcctgttgcttggcttcaacacgttcgacttcatcaagatc
ctcaggcagcaccggcgcatgatccagtattgtaccatgttggcgagcgcccagagtgag
gcggagaaggagaagattattgggaagatggagtcggatcaggaactgtccaaaatcctt
taccagctacaggagaccgagaaagaggatattatcagggaggagcgatctcgcagggag
agggtgaggaagtctcgtatggataatgacctggagtccatggacattgaccacggagag
tccatgacccctcgccagctcctggacctcgaggatctggccttcacgcagggaagtcac
ttcatggccaacaagaggtgccagctgcctgacggatccttccggaaacagcgcaaagga
tacgaggaagttcacgttcccgccctcaaacccaagcccttcgctgacgatgaggtgctt
gtgcccattgagaagctccccaagtatgcccaggccgggttcgaaggcttcaaaaccctg
aaccgcatccagagcaagctgttcaagaccgccttggagacggacgagaacctgctcgtc
tgcgcgcccacgggcgcgggtaagaccaacgtggctctgatggccatgctcagggagatc
ggcaagcacatcaacctggacgggaccatcaacctggacgacttcaagatcatctacgtg
gctcccatgcggtcgctggtacaggagatggtggggagcttcagcaagcgcctggccagc
tacggcatcatcgtgtctgagctgacgggcgatcaccagctgtgtaaggaggagatcaat
gccacgcaggtgatcgtgtgcaccccggagaagtgggacatcatcacccgcaaggggggc
gagcgcacctacacccagctagtccgcctcatcatcattgatgagatccacctgctccac
gacgaccgtggcccggtgctggagtccctggtggcccgcaccatccgcaacgtggagcta
acccaggaggacgtgcgcctgctgggcctcagcgccaccctgcccaactacgaggatgtg
gccacctgcctgcgcgtcgaccccgccaagggcctcttctacttcgacaacagcttccgg
cccgtgcctctggagcagacctacgtgggcatcacggagaagaaggccatcaagcgcttc
cagatcatgaacgagatcgtgtacgagaagatcatggagcacgcggggaagaaccaggtg
ctggtgttcgtccactccaggaaggagacagggaagacggcccgggccatcagggacatg
tgcttggagaaggacaccctggggctgttcctcagggagggctcggcctccacagaggtc
ctgaggaccgaggcggagcagtgcaagaatctggagctgaaggatttgctgccgtacggc
tttgctattcaccatgctgggatgaccagggtggaccgtaccttggtggaggatctgttt
gctgatcgccacattcaggtgctggtgtctacagccacgctggcctggggagtcaatctc
ccagcacacaccgtcatcatcaagggaacgcaggtgtacagccctgagaagggccgctgg
accgagctgggagccctggacatcctacagatgctgggccgagcagggcgtccccagtac
gacaccaagggcgagggcatcctcatcacgtctcacggggagctgcagtactacctgtct
ctgctcaaccagcagctgcccatcgagagccagatggtggccaagctgcccgacatgctc
aacgccgagatcgtgctgggcaacgtgcagaacgccaaggatgcggtgaactggctgggc
tacacctacctgtacgtgcgcatgctgcgcaaccccaccctgtacggcgtctcccacgac
gaccgcagctcggaccccctgctggagcgccgcaggatggacctggtgcacacagctgcc
aacgtcttggacaagaacagcctggtcaagtacgacaagaggaccggaagcttccaggtg
accgacctgggccgtattgccagtcacttttacatcacccacgactccatccagacctac
aaccagcttctgaagcccaccctcagcgagatcgagctcttcagggtcttctccctctca
tctgagttcaggaacatcaccgtcagagaggaggagaagctggagctgcagaagcttcta
gagagagtccccatcccagtgaaggagagcatcgaggagcccagcgctaagataaacgtg
cttctccaggcttacatctctcagctgaagctggagggctttgccctcatggctgacatg
gtgtacgtcacacagagcgcggggagactgatgcgtgccatctttgagatcgtcctgagc
cgaggctgggcccagctcactgacaagaccatgaacctgtgcaagatgattgacaagagg
atgtggcagtccatgtctcctctgcgccagttcaggaagcttccggaagaggtcatcaag
aagatcgagaagaagaacttccccttcgagcgcctctacgacctcaaccacaatgagatt
ggtgagttgatccgcatgcccaagatgggaaagaccatccacaagtacgtccaccagttc
cccaagctggacctggccgtgcacctgcagcccatcacccgctccaccctcaaggtggag
ctcaccatcacgcccgacttccagtgggacgacaaggtgcacggctcgtccgaggccttc
tggatcctggtggaggacgtggacagcgaggtgatcctccaccacgagtacttcctgctc
aaggccaagtacgcccaggacgagcacctggtgaccttcttcgtgcccgtgttcgagccc
ctgccgccccagtacttcatccgcgtggcctccgaccgctggctgtcctgtgagacccag
ctgcccgtgtcgttccgccacctgatccttccggagaagtaccctccgcccacagagctg
ttggacctgcagcccctgcctgtgacggccctccggaacgccgccttcgagaccctctac
cacaacaagttccccttcttcaaccccatccagacacaggtgttcaacgctctgtacaac
agcgatgacaacgtgtttgtgggcgcgcccacgggcagcgggaagaccatctgtgccgag
tttgccatcctgaggatgctgctgcacaacgtggagggtcgctgtgtctacatcacgccc
atggaggccctggctgagcaggtgttcatggactggcaccagaagttccaggacgcactg
agtaagaaggtggtgttgctgacgggggagaccagcaccgacctcaagctgctgggcaag
ggcgacatcatcgtcagcacgcccgacaagtgggacatcctgtcccgccgctggaagcag
aggaagaacgtccagaacgtcagcctgttcatcgtggacgagacccacctgatcggagga
gataatgggccggtgctggaagtgatctgctccaggatgaggtacatctcctcccagatc
gagcggcccatccgcatcgtggccctcagctcgtccctctccaacgccaaggacgtggcc
cactggctgggctgcagcaccacggccaccttcaacttccaccccaacgtccggcccgtt
cccctggagctgcacatccagggcttcaacgtgagtcacacccagacccgcctgctgtcc
atggccaagccggtgtaccacgccatcatgaagcactcgccctccaagcccgccgtggtg
tttgtgccgtcccgccgccagacccgactcaccgccatcgacatcctcaccttctgcgcc
gccgacgtcgttccccagaggttcctgcactgcacagagaaggacctggctcccttcctg
gagaaggtggcagacgccaccctgaaggagaccctggccaacggggtgggctacctgcac
gagggcctcaacaccaccgagcgcaagatcgtggagcagctcttcaactccggtgccgtc
caggtcgtggtggcatcgcgctccctctgctggggcaccaacatctctgctcacctcgtc
gtcgtcatggatacccagtactacaacggcaaaatccacgcgtatgtggactatcccatc
tacgacgtgctccagatggtgggcaaagccaaccgccccctgcaggacgacgagggccgc
tgcgtcatcatgtgtcagggctccaagaaggacttctttaagaagttcctgtacgagccg
ctgccggtggagtcccatctggaccactgtctccacgaccacttcaacgccgagatcgtc
accaagacggtggagaacaagcaggacgccgtggactacctcacctggacgttcctctac
cgccgcatgacacagaaccccaactactacaacctgcagggcatgtctcaccgtcacctg
tcggaccacctgtctgagctggtggagcacaccctgcatgacctggagcagtccaagtgc
atcagcatcgaggacgagatggacgtggctccccttaacttgggcatgatcgctgcctac
tactacatcaactacaccaccatcgagttgttcagcatgtctctgaacgccaagacaaag
atccgaggcttgatcgagatcatctccaacgccgccgatgtacaacaacatcccatcaga
caccacgaggacactctgctgcgacagctggcccagaaggttccccacaagctgaacaac
cccaagttcaacgacccccacgtgaagaccaacctgatgctgcaggcccacctgtccagg
atgcagctgagcgccgagttgcaatctgacactgaggacatcctcagcaaggctgtgcgt
ctgatccaggcgtgtgtggacgtgctgtccagtaacggctggctgagccctgccctcgct
gctatggagctggcccagatggtcacccaggccatgtggtccaaggactcgtacctcaaa
cagctgccctacttcacctcagaacacatcaagcgctgcacagacaagggggtggaaagc
atcttcgacatcatggagatggaggatgaggagaggagcgccctgctgcagctgtccgac
ggccagatcgccgacgtggctcggttctgtaaccgctaccccaacatcgagctgtcctac
gaggtggctgagaaggacaacatcaagagtggaggtccattcctgattctggtgcagctg
gagagggaggaggaagtcactggtccggtcatcgcccctgctcttccacagaaacgtgag
gagggctggtgggttgtgattggagatcccaagtccaacagcctgatctctatcaagagg
ctcaccctgcagcagaaggccaaggtgaaactggactttgtggcgcccgtgttgggggtc
cacaaactacgctgttacttcatgagcgacgcctacatgggctgcgatcaggagtacaag
ttcagcgtggacgtgaaggaggctgaccagcgaggggcgacagcgactcggactgaggtc
acctggaggagttccaactga
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integrated database retrieval system
