Osmerus eperlanus (European smelt): 134015063
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Entry
134015063 CDS
T10927
Symbol
skic3
Name
(RefSeq) superkiller complex protein 3
KO
K12600
superkiller protein 3
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134015063 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134015063 (skic3)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
134015063 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_16
TPR_19
TPR_17
TPR_14
TPR_8
TPR_11
TPR_9
TPR_CcmH_CycH
TPR_12
ChAPs
ANAPC3
ARM_TT21_C
Fis1_TPR_C
HEAT_Nup120
PknG_TPR
Motif
Other DBs
NCBI-GeneID:
134015063
NCBI-ProteinID:
XP_062310352
LinkDB
All DBs
Position
28:complement(5321205..5335436)
Genome browser
AA seq
1577 aa
AA seq
DB search
MSSKEVKSELKSAREAIKNKEFKEALKHCKAVLKLEKNNYNAWVFIGVAASELEQPDQAQ
TAYRKAAELEPEQLLAWQGLANLYEKTEQIDFKAELPQVYQKLVQLYESSDKTKCYEAIQ
KLSDIYHAQKNYLQVATLWQRLIQLKEGEAVEKVEVLGLLRRMSLLLSDSVEEQDNETQQ
HLIAALEKAMALTDGVPGEEHQKLSADYIRCLSKLSHEEAKMKEACESMSSLYPSHTFPL
EVMCTHYLNTGVLGEDAGRWFDRLSELDPGSGLGHLGVGIRALEEGKCEDAVKNLAQGLK
KMRSCTVGWHRLAQAQLRMHRYSDCAASCLQGLSGAGQEAVRPKLLRLRLEALVGSGEKR
AGEQALETLTQLPDAESDPVLVALKGRVYLQTDQVDQALQVSSELLASNPDLAQGLALRG
LAQLAQDQHHLAEQSFLQAVSQRPDCGEYYFLLGRLYWDMGEETRKDRSKAHTHLLKAAK
LDPYLGCVFRYLGHYYREVARDQGRARGCYKKAFEMEAGDVESGAASVDLSMEQGDMDTA
LAVLQSVIEKASPGSAKWAWMRRGLYHLKVGQHPQAVSDLQATLRADPQDWVCWECLGEA
YLHRRSFSAALKAFARALQLQPSSIYSLYQTAAIKQTLGNFKEAAAEYSQIVSREDYVPA
LKGLGECLLSLSKGLMEDYRDGGAIDLIQKAILHLFKAVQLRPDLSCLWKILGDVCTTVS
AVSLNRAHVLVPGPLAGLQPADQNHPLDQAQTLRVGERCYGRALKLMAEAPSLWYDLGLN
YHQQARLLCSTQGEEEDPSSLSLLLEKAQQCVKKAVMLDSGNHSYWNALGVVAMSKGLEN
FALAQHCFIKSIQVESSNVVAWTNLGVLYLKKDNIELSHEAFKIAQSLEPLYVRCWIGQA
LIAERVGSCDTMDLFRHTTELGTHTEGVKGYAYWVCATLLDKTNRDTELYRYNIVQMNAV
SAAHVSLSKYTERIQTDPDAFIMLGYLNERLQLKTQALQAYQRAVELLQTPSCEEKLAFA
LGSYGRALCATGQWEDAVRVYSSTPLEELQDLAGLALAYCRAGITPDSINAYERALASAS
SEKDKAYVLTSLALLQHRLGHSDAAKTLLFKCSMLKEPIPESLLCLCALGLVQGDATLAG
AALNELLKQGRATGGAVEDRCLLTCALLALQGNYSAVQREASRAVHSNPGDPSLWALLSR
LVPQYYPRKAKGGAMAGHVACLSSMTQGKRALLYSGVNQLACGRHSGEDPSRNPLKTLQR
AVLLCPDDPAAWAGLMAACHTENATCALSGSAPGRRGLEQILMGVVSEKVRCVEEGDRPL
AQALEGWVLQQAVTGLTLGGELDQAETLCSQVLTVSPEQPAVLLLLRQVQCERLLLASAG
TAPPAALPDAVLEQLSSAVLANHTSAAAWHWLAEVYRSQGLLVQAVVAYRQSLQLASQLG
LLSAQVASLLRLALLALGPYMAGVPGSDWKDLVMEATAEVLKLGPSPVAILIQALLQFST
KMAARETRRLLERVVYDPSRSSPHTVQSVARWYLLRHLHAKDDLELMDTLLDQARACGDG
RLQEFHTLLTTSSSNSC
NT seq
4734 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaaagaagtgaaatcggagctgaaaagtgccagagaagctattaagaacaag
gagttcaaagaggcactaaaacactgcaaggctgtgctgaagctggagaagaacaactac
aatgcctgggtgtttatcggagtggcagcgagcgagttggagcagccagaccaggcgcag
actgcctacaggaaggcagcggagcttgagcctgagcaactactggcctggcaggggtta
gctaacttgtatgagaaaacggagcagatagactttaaagcagagctgccccaggtctac
cagaaactcgtacagctgtatgaaagttcagacaagaccaaatgttacgaggccatccaa
aaactgtcagacatctaccacgcccagaagaactatttacaggtggccacgttgtggcag
cgtctgatccaactgaaggagggagaagctgtggagaaggtcgaggtcctagggctcctg
cgccggatgagcctcctactgtccgacagcgtggaggaacaggacaatgagacacagcag
catttaatcgcggccttggaaaaagccatggcactcactgacggtgttcctggtgaggaa
catcagaagctctcagccgactacatcagatgcctctccaagctctcccatgaagaagcc
aagatgaaggaagcctgcgagtccatgtcgtccctctacccctcacacaccttccccctg
gaggtcatgtgtacacactacctcaacacaggggtcctcggtgaggacgctggtcgctgg
tttgaccggctctcggagttggaccctggcagtggcctgggccacctgggagtgggaatc
agagctctggaggagggcaagtgtgaggacgccgtcaagaatctggcccaagggctgaag
aagatgcgctcctgcacagtaggatggcacaggctggcacaggcccagctccgaatgcac
cgctactctgactgcgctgcgtcctgcctccaagggctgagcggggctgggcaggaggcg
gtgaggccgaagctgctgaggctgaggctggaagccctggtggggagcggggagaagcgg
gcaggagagcaggctctggagaccctcacccagctcccggatgctgagagtgaccccgtc
ctggtggcgttgaaaggcagagtgtatctgcaaacagaccaagtggatcaggcgcttcag
gtgtcctctgagttgctggcctccaaccctgacctggctcagggcttagctctgagggga
ctggctcaactggcccaggaccaacaccatctggcagagcagagcttcctgcaggcagtg
agccagaggccagactgtggggaatactacttcctgttggggcggctctactgggacatg
ggggaggagacccgcaaggacaggagcaaggcccacacccacttgcttaaggcggcgaag
ctggacccgtacctgggctgcgtgttccggtacctgggccactactaccgagaggtagcc
agggaccaaggcagggccagaggctgctacaagaaggcctttgagatggaagcgggcgat
gtggagtcgggggccgcctcggtggaccttagtatggagcagggagacatggacacagcc
ctagcggtgctccagtccgtgatagagaaggccagtcctggctctgctaagtgggcctgg
atgaggcgagggctctaccacctgaaggtcggccagcacccccaagctgtctcagacctc
caggcaaccctgagggcagacccccaggactgggtgtgttgggagtgcctgggcgaggcc
tacctgcaccgccgcagcttctcggccgccctcaaggccttcgccagggccctgcagctc
cagccctcctccatctacagcctctaccagaccgccgccatcaagcagaccctgggcaat
ttcaaggaggcggccgcagagtactcgcagatcgtgtcgcgggaggactatgtacccgcg
ctcaaaggtctaggcgagtgcctgctgtccttgtctaaaggcttgatggaggactacagg
gatggaggggccatcgacctcatccagaaggccatccttcacctcttcaaggctgtgcag
cttcgcccagacctgtcgtgtctgtggaagatactgggggacgtctgcaccacggtcagc
gctgtctctctcaaccgggctcacgtcctggtaccaggccccctggccgggctgcagcca
gcagaccagaaccaccccctcgaccaggcccagaccctccgagtcggggagaggtgttac
gggcgggccctgaagctgatggccgaggcccccagcctgtggtacgacctggggctcaac
taccaccagcaagcccgcctgctctgctccacacagggggaggaggaggacccgagctcc
ctgtctctcctcctggaaaaggcccagcagtgtgtgaaaaaggcagtcatgttggacagt
ggtaaccatagctactggaacgccctcggagtggtcgccatgagcaaaggacttgagaac
tttgctctcgctcagcactgcttcataaagtccatacaagtggagtccagtaatgttgtc
gcatggacaaacctgggtgtgttatatctgaagaaggacaacattgagctctcccacgag
gcgttcaagatcgcccagtctctggagcctctctatgtccgctgctggatcggacaggcc
ctgatagcagagcgagtgggcagctgcgacaccatggacctgttcagacacaccacagag
ctgggcacacacacggagggggtgaagggctatgcctactgggtgtgcgccaccctgctg
gacaagaccaaccgagacacggagctgtaccgctacaacatcgtccagatgaacgctgtg
tctgcagcacacgtgtccctcagcaaatacacagagaggatccagaccgatccggatgcc
ttcatcatgctgggctacctcaacgagcgcctgcagctgaagacccaagccctccaggcc
taccagagggctgtggagctgcttcagaccccgtcctgtgaggagaagctggccttcgct
ctgggcagctacggacgagccctctgtgccacaggccagtgggaggacgcggtccgcgtt
tactcatccacacccctagaggagctgcaggacctggcaggcctggccctggcctactgc
agggccggaatcactccagacagcatcaacgcctacgagcgggccctggcgtcggcctcc
agcgagaaggacaaggcttacgtcctcacgtccctggctctgctgcagcacaggctcgga
cactcggacgccgccaagacgctgctcttcaaatgctccatgctgaaggagcccatccca
gagtccctgctgtgtctgtgcgcgctgggcctggtccagggcgacgccacgctagccggc
gcggccctcaacgagctgctgaagcagggccgggccaccgggggcgccgtggaggaccgc
tgcctgctcacttgcgccctgctggccctgcaggggaactacagcgccgtgcagagagag
gcctccagagctgtccacagtaatcctggagatccttctctgtgggctctgctctccagg
ctggtgccacagtactatccgagaaaggccaagggaggtgcgatggcaggccacgtcgct
tgtctctccagtatgacccagggcaagagggcgctgttgtacagtggcgtgaaccagctg
gcgtgtggaagacactcgggtgaagaccccagcaggaaccccctgaagaccctgcagaga
gctgtgctgctctgtcctgatgaccctgcggcctgggcggggctaatggctgcctgtcac
actgaaaacgccacctgcgccctgtctggctccgccccagggagacggggattggagcag
atcctgatgggggtggtgtccgagaaagtgcgctgtgtggaggagggcgaccggcccctg
gcccaagccctcgagggctgggtgttgcagcaggccgtaacaggactcaccctggggggg
gaactggaccaggccgagaccctctgctcccaggtcctgactgtgtctccagagcagccg
gctgtgctcctgctgctcaggcaggtgcagtgtgagcgcctcctcttggccagcgccggt
actgcccctcctgccgccctgccagacgcggtgctggagcaactcagcagtgctgtcctg
gccaaccacacgtctgctgcagcctggcactggctggcggaggtgtaccgcagccagggc
ctgctcgtccaggccgtcgtggcctacaggcagagcctgcagctggcctctcagctgggc
ctgctcagcgcccaggtggccagcctcctgcgcctggctctgctagccctgggcccctac
atggcgggcgtccccggtagcgactggaaggacctggtgatggaggccaccgccgaggta
ctgaagctcggcccctcccccgtcgccatcctcatacaggctctgctgcagttctccacc
aagatggccgccagggagaccagacggctcctggagagggtggtgtacgacccctcccgc
agctcccctcacacggtgcagtctgtggcccgctggtatctcctcaggcacctccacgcc
aaggacgacctggagctgatggacaccctcctggaccaagccagagcctgcggagacggg
aggcttcaggagttccacactctgctcaccacctcctcctccaactcttgctga
DBGET
integrated database retrieval system
