Osmerus eperlanus (European smelt): 134021311
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Entry
134021311 CDS
T10927
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
134021311 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oep03019
]
134021311 (cnot1)
Messenger RNA biogenesis [BR:
oep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
134021311 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
134021311 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
134021311
NCBI-ProteinID:
XP_062317977
LinkDB
All DBs
Position
5:complement(16786032..16806622)
Genome browser
AA seq
2422 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFISTLCYAIDNPLHYQKSLKPSTHLFTQLSKVLK
LSKVQEVIFGLALLNSCNADLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLSEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLADGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFMVRDSKGLQMVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPDVFC
FADFPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPSFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHLEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLSCLQSCAG
NVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSPLQIDP
LSAMGSLNIGGSATSHTQSMQGFPTTLASAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLS
SQISGPLGSGIGSGIGSGIGLGMQTGSSDPFGTRKMSTPGLNPTTFQQTDLSQVWPEANQ
HFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEE
YRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAAL
DRFKNRLKDYPQYCQHLASIGHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSL
ALAQAQAQSQPPKAPQPGQPSTLVTTAATTTTKTTTITRPTPGSFKKDVPVSTAPAKMPS
INTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPW
VSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDR
SLLKNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYVKGQQELLYVVPFVAKVLESSLRS
MIFRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGTLLKDKDKL
KSLEEQLSAPKKESKPPEEMLPIVTTGTPLYTGDFLPFAAAPSTPAATTPCTATGPPTPQ
FSYHDINVYALAGLAPHININISIPLLQAHPQLKQCVRQSIERAVQELVHPVVDRSIKIA
MTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAA
LRAPTPQQRELMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQE
GRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLA
QPMKQQAWATDDVAQIYDKCMADLEQHLHAIPPALAINPQTQALRSLLEAVALARNSRDG
IAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLI
ECRDEYKYNVDAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERS
VSHITEADLFHTIDTLMRTSAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSG
ISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLI
TRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATN
TVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQT
LTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYL
APFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSA
FPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSE
LRSNLQVGGATLGPWKYLQHNETSLDQVSNEAGNRYNIQLINALVLYVGTQAIAYIHNKG
STPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYLFAE
ANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDFVHCAPEIEKLFQ
SVAQCCMGQKQAQQVMEGTGAS
NT seq
7269 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctttcgctggctttgtctcaaatcagctatctggtagacaattta
acaaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcgtcacggc
cccgaggcagacaggcatttattacgctgtctcttctcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagactttcatcagacacagtttctaatccaggagtgtgtgtca
ctgatttcaaagccaaactttatctcaaccctttgctacgccatcgacaatcctctgcat
taccagaagagtttgaagccgtcgacccacctttttactcagctgagtaaagttcttaaa
ctaagcaaagtccaagaagtgatatttggccttgctttgctgaattcgtgcaacgcagat
cttcgcggttttgctgcgcagttcatcaagcagaagctccctgacctcctgcggtcttac
gtggacgcagaccttggggggaaccaggaaggtggcttccaggacattgccatagaggtc
ctgcacctgctcctctcccatctcctgtttggccagaagggagccagcggtgtcgggcaa
gagcagattgacgccttcctcaagacactgtgcagagatttcccccaggagcgctgccct
gtggtgcttgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggagagttagccaagaccatgatggagagttctctttcagagttcatgcaa
gaagttggctatggcttctgtgcaagtcttgatgagtgcaggaacataatcctgcagtat
ggggtgcgagaggtgacagccagccaggtggccagagtcctgggcatgatggctcgcaca
cactctggcttggctgatggcatccccttacagtccatctcggcgccgggcagtgggatc
tggagcgatgggaaagacaagagcgatggctcgcaggcccacacctggaatgtagaagtt
ctcattgacgtggttaaagaagtgaaccccaatctgaacttcaaagaggtgacgtatgag
ctggaccatccaggcttcatggtccgggacagtaagggcctccagatggtggtgtacggc
attcagagaggcctgggtatggaagtcttccctgtggacctcatctacagaccctggaag
catgctgagggacagttgtcattcatccagcactccctcatgagcccagatgtgttctgt
tttgctgacttcccctgccacactgtggccatcgacatactgaaggccccgccagaagac
gacaacagggagatcgctacctggaagagcctggacctggtggagagcctcctgcggctg
tccgaggtgggccagtacgagcaggtgaagcagctgttcagcttccccatcaagcactgt
ccagacatgctggtgctggccctgctgcagatctccacctcctggcacaccctgcgccac
gagctcatctccaccctcatgcccagcttcctgggcaaccaccccaactcagccatcatc
ttgcactatgcctggcacggacagggccagtccccctctatccgccagctgatcatgcac
tcgatggcagagtggtacatgagaggggagcagtacgaccaggccaagctgtctcgtatt
ctggacgtggcccaggacttgaagtctttatcgatgctgctgaatggtactccatttgcc
tttgttattgaccttgctgcacttgcttctcgccgtgaatacctcaaactggacaaatgg
ctgactgacaaaataagagagcatttggagcccttcatccaggcgtgtgtgacgttcctg
aagagacgctgcccctccatcatggggggtctggcaccagacaaggaccagcccaagagc
gcccagctccccccagagacactggccaccatgctgtcttgtctgcagtcctgcgctggg
aatgtgtctcaggagctctcagagacaatcctgaccatggttgccaactgtagcaacgtg
atgaataaagctcgccagcctcctccgggggtcatgccaaagggacgtgctcccagtacc
agcagcctcgacgccatatcccctgtgcaggtatcggtgtctcccctccagatcgaccca
ttgtctgccatgggctccctgaacattgggggatctgccacctctcacacacagagtatg
cagggctttccaaccacgctggcttcagccttcagcaacccccagtctccagccaaggcc
ttccccccgctctccaaccccaaccccagcacaccgtttgggggcatcggatctctctct
tcacagatatctggtccactgggctctggcatcggttctggcatcggctctggtattggt
ctggggatgcagacagggagcagtgacccgtttggcacaagaaagatgagcacaccgggg
ctgaaccccacaacctttcagcagaccgacctctctcaggtgtggccagaggctaaccag
cactttagcaaggagattgacgatgaggccaacagctacttccagcgcatctacaaccat
cccccacaccctaccatgtctgtggacgaggtgttggagatgctccaaaggttcaaagac
tcgaccatcaagcgtgagcgcgaggtgttcaactgcatgttgaggaacctgtttgaggag
taccgcttcttcccccagtacccggacaaggagctgcacatcaccgcctgcctgttcggg
ggcatcattgagaagggtctagtcacctacatggccctgggccttgccctcagatacgtt
ctcgaagccttaaggaaacccttcggatccaaaatgtattactttggaatcgctgctcta
gatagattcaaaaacagattgaaggactatcctcaatattgtcagcacttggcctcaatt
ggccattttctgcaattcccccaccatttacaagagtgcgtacagtatatcgagtatggc
caacagtcacgggatcccccggtgaagatgcagggatccatcaccacccccggaagccta
gcgttggcccaggcccaggcccaatcccagccgcccaaagcccctcagcccggccagccc
agcaccttggtcaccacagccgccaccaccaccaccaaaaccaccaccatcacccggcca
acaccgggcagcttcaagaaggatgtcccggtgagtacggccccggcgaagatgccctct
atcaacaccaccaacatcgacaccctgctcgtggctacagaccagacggagaggatcgtc
gagcctcccgaaaacgtccaggagaagatcgccttcatcttcaacaacctgtcgcagtcc
aacatgacacagaaggtggaggagctgaaggagactgtgaaggaggagttcatgccctgg
gtgtcacagtacctggtcatgaagcgtgtcagcattgagcccaactttcacagcctctac
tcgaacttcctggatacattgaagaaccccgagttcgtcaagatggtcctcaacgagact
taccgcaacatcaaggttctattgacctcagacaaggcagctgcaaacttctctgatcgc
tccctgttgaaaaacctgggccactggttgggaatgatcactctggctaaaaacaaacca
atactctacactgatctggaggtgaagtctctcctgttggaggcctatgttaagggtcag
caggagcttctgtacgtggtccccttcgtggccaaagtcctcgagtccagtttacgtagc
atgatcttccggcctcagaacccctggactatggccatcatgaacgtcctggcagaactc
caccaggagcatgacctgaagctcaacttgaagtttgagattgaggttctgtgtaagaac
ctgtccctggacatcaacgacctgaagcctgggaccctgctgaaggacaaggacaagctg
aagagcctggaggagcagctctccgcaccaaagaaggagagcaagcctcccgaggagatg
ctgcctattgtaacaacaggtacaccactgtatacaggagactttcttccatttgcagct
gccccctctacgcctgccgctaccaccccctgcacagccaccggaccccccacccctcag
ttcagctaccatgacatcaatgtgtacgccctggcagggctggcccctcacatcaacatc
aacatcagtatccccctgctacaggcccacccccagctgaagcagtgtgtgagacagtcc
atcgagcgggccgtccaggagctggtccaccccgtggtcgaccgctccatcaagatcgcc
atgaccacctgcgagcagatcgtcaggaaggactttgccctggactctgaggagtcgcgc
atgcgcgtggcggcccatcacatgatgcggaacctgactgcaggcatggccatgatcacc
tgcagggagccactgctcatgagcatcgctaccaacctgaagaacagctttgcagccgcc
ctcagggcccccactccccagcagagagagctgatggaagaggctgccgccaggattgct
caagacaactgtgaactcgcctgctgcttcatccagaagactgctgtagagaaggcagga
cctgagatggacaagagactggccaccgagtttgagctgaggaagcatgcccgccaggag
ggccggcgctactgtgaccccgtggtgctgacctaccaggctgagcgcatgccggagcag
atcagactcaaggtgggaggtgtggatcccaagcagctggctgtgtacgaggagtttgcc
aggaacgtgcccggtttcctccccagcaacgacctgtctcagcccactggcttcctggct
cagcccatgaagcaacaggcatgggccacagacgacgtggctcagatctatgacaagtgc
atggcggaccttgagcagcacctgcatgccatccccccagcgctggccatcaacccccag
acccaggccctgcgcagcctcctggaggccgtggccctggccaggaactcccgtgacggc
atcgccgccctggggcttctgcagaaggcggtggaggggctgctggacgccaccagcggg
gccgacgccgacctgctgctgcgctacagagagtgccacctgctggtgctcaaggccctg
caggacggccgcgcctacggcccccagtggtgcaacaagcagatcaccaggtgcctgatc
gagtgtcgcgacgagtacaagtacaacgtggacgctgtggagctgctgatcaggaaccac
ctggtcaacatgcagcagtacgacctgcacctggcccagtccatggagaacggcctccac
tacatggctgtggcgttcgccatgcagctggtgaagctgctgctggtggacgagcgcagc
gtgagccacatcaccgaggccgacctgttccacaccatcgacaccctgatgaggaccagc
gcccactccagggccaacgcccccgagggtctcccccagctgatggacgtggtgcgctcc
aactacgaggccatgatcgaccgtgcccacggaggccccaatttcatgatgcactcgggg
atctcgcaggcgtccgagtacgacgacccgccgggcctgagggagaaggccgagtacctg
ctgagggaatgggtcaacctgtaccactctgctgctgcaggcagggacagcaccaaggcc
ttttctgcctttgtaggacagatgcaccagcagggtatcctgaagaccgacgatttgatc
acgcgcttcttccgcctgtgtacggagatgtgcgtggagatcagctaccgcgcccaggcg
gagcagcagcacaaccctgcggccagcgcggccatcatcagggccaagtgctaccacaac
ctggacgccttcgtccgcctcatcgccctgctggtcaaacactctggagaggccaccaac
acggtcaccaagatcaacctgctcaacaaggttcttggcatcgtggtgggggtgctgatc
caggaccatgacgtgaggcagacggagttccagcagctgccgtaccatcgcatcttcatc
atgctgctgctggagctcaacgcccccgagcatgtcctggagaccatcaacttccagacc
ctcacagccttctgcaacaccttccacatcctgcggcccaccaaagcccctggcttcgtc
tacgcctggctggagctcatctcccaccgcatcttcatcgccaggatgctggcacacacg
ccacagcagaagggttggcccatgtacgcccagctgctcatcgacctgttcaagtacctg
gcacccttcctgaggaatgtagagctcaacaaacctatgcaaatcctctacaagggcact
ctgcgtgtcctgcttgtcctgctgcatgacttcccagagttcctgtgtgactaccactac
ggcttctgtgacgtcatccctcccaactgcatccagctgcgcaacctgatcctgagtgcc
ttcccccgcaacatgaggctcccagaccccttcacacccaacctcaaggtggacatgctg
agtgagatcaacatcgccccccgcatcctcaccaacttcaccggagtgatgccctctcag
tttaagaaggacctggactcgtacctgaagacgcgctcccccgtcaccttcctgtccgag
ctccgcagcaacctgcaggtagggggcgccactctgggtccctggaagtatttgcagcac
aacgaaacatctttagaccaggtgtcaaacgaggcagggaatcgctacaacatccagctg
atcaacgccctggtgctgtacgtgggcacacaggccatcgcctacatccacaacaagggc
agcaccccctccatgagcaccatcacccactctgcacacatggacatcttccagaacctg
gccgtcgacctcgacacagagggccgctacctgttcctgaatgcgatagccaatcagctg
cgctacccaaacagccacacccactacttcagctgcaccatgctgtacctgtttgcagag
gccaacacagaggccatccaggagcagatcaccagggttctcctggagaggctcatagtg
aacaggccacacccctggggtctgctcatcaccttcatcgagctcatcaagaaccccgcc
ttcaagttctggagccacgactttgtgcactgtgcccctgagatagagaagttgttccag
tctgtggcccagtgctgcatggggcagaagcaggctcagcaggtgatggagggcactggt
gccagctag
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integrated database retrieval system
