Osmerus eperlanus (European smelt): 134039594
Help
Entry
134039594 CDS
T10927
Symbol
shmt1
Name
(RefSeq) serine hydroxymethyltransferase, cytosolic isoform X1
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
oep Osmerus eperlanus (European smelt)
Pathway
oep00260
Glycine, serine and threonine metabolism
oep00630
Glyoxylate and dicarboxylate metabolism
oep00670
One carbon pool by folate
oep01100
Metabolic pathways
oep01200
Carbon metabolism
oep01230
Biosynthesis of amino acids
oep01240
Biosynthesis of cofactors
oep04981
Folate transport and metabolism
Module
oep_M00141
C1-unit interconversion, eukaryotes
Brite
KEGG Orthology (KO) [BR:
oep00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
134039594 (shmt1)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
134039594 (shmt1)
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
134039594 (shmt1)
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
134039594 (shmt1)
Enzymes [BR:
oep01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
134039594 (shmt1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Motif
Other DBs
NCBI-GeneID:
134039594
NCBI-ProteinID:
XP_062341540
LinkDB
All DBs
Position
2:866148..872500
Genome browser
AA seq
482 aa
AA seq
DB search
MSVTNGDHVSQDTWESHNKMMLEPLSTNDSEVFDIIKREKHRQTYGLELIASENFTSRAV
LEALGSCMNNKYSEGYPGQRYYGGTEHVDELERLCQSRALQAYGLHPDRWGVNVQPYSGS
PANFAVYTAIVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYI
DYDRLEENARLFHPRLIIAGTSCYSRNLDYARLRGIAEQNGAFLLADMAHISGLVAAGVV
PSPFEYCDVVSTTTHKTLRGCRSGVIFYRKGVRSVDAKGKETLYNLESLINQAVFPGLQG
GPHNHAIAGVAVALKQALTPEFKAYQLQVLANCKAMSNTLIKHGYKIVTGGSDNHLVLLD
LRPNKSDGGRAEKVLEACAIACNKNTCPGDKSALRPSGLRLGSPALTSRGLLEDDFRKVA
DFIHRGIQLTLQIQSSLDPKATLKDFREALAHGEKHQQRVAELRGEVEAFAGHFPMPGLP
EL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgacaaacggtgaccatgtgagccaagacacgtgggagtcccacaacaagatg
atgttggaacctctctccaccaacgactcagaggtgttcgacatcattaagagagagaag
cacaggcagacgtatggtctggagctgatcgcttctgagaacttcaccagcagagctgtg
ctggaggctctgggttcctgcatgaacaacaagtactctgagggctaccctggacagagg
tactatggaggcacggagcatgtggatgagctggagaggctgtgtcagagcagggctctg
caggcgtacggcctccacccagacaggtggggtgtcaacgtgcagccctactcaggttct
cctgctaactttgctgtgtacacggccattgtggagccccatgggaggatcatggggctg
gaccttcctgacggaggtcacctcactcacggcttcatgactgacaagaagaagatctcg
gccacttccatcttttttgagtccatgccctacaaggtgaacccagacaccggctacatc
gactacgaccgtctagaggagaacgcacgactgttccacccccgtctgatcattgcagga
accagctgttactcgcgtaaccttgactacgctcgtttgcgtgggatagcggagcagaat
ggggcgttcctgctggctgacatggcccacatcagcggactggtggctgccggcgtcgtg
ccgtcacccttcgagtactgcgacgtggtttccacgacgacgcacaaaacgctccggggc
tgccgctccggggtcatcttctaccggaagggtgtacgcagcgtggacgccaaggggaag
gagaccctgtacaacctggagtctctgatcaaccaggccgtgttccctgggctgcagggc
ggacctcacaaccacgccatcgctggggtggcggtggcgctgaagcaggccctgacccct
gagttcaaggcctaccagctgcaggttctggccaactgtaaagccatgagcaacacactc
atcaaacacggctacaagatcgtcactggaggctcggataaccacctggtcctgctggat
ctgagacccaacaagagcgacggaggacgggctgagaaggttctggaagcatgtgccatt
gcctgcaacaagaacacctgcccaggggataagagcgctctgcgtcctagtggtctgagg
ctgggctcccctgctctgacctccagaggcctgctggaggacgacttcaggaaggtggct
gacttcatccacagaggcatccagctgactctgcagatccagtccagcctggaccccaag
gccaccctgaaggacttcagagaggccctggcccacggagagaagcaccagcagcgggta
gctgagctcaggggggaggtggaggccttcgctgggcacttccccatgcctggcctccct
gagctgtag
DBGET
integrated database retrieval system
